Wall clock time and date at job start Tue Mar 31 2020 05:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47120 * 2 1 4 4 C 1.36944 * 119.99579 * 265.63172 * 3 2 1 5 5 H 1.08002 * 119.99851 * 149.12472 * 4 3 2 6 6 C 1.38811 * 119.99944 * 329.12112 * 4 3 2 7 7 N 1.31618 * 120.00038 * 332.73696 * 6 4 3 8 8 Si 1.86795 * 119.99900 * 152.74038 * 6 4 3 9 9 H 1.48501 * 109.47079 * 84.99875 * 8 6 4 10 10 H 1.48502 * 109.47191 * 204.99672 * 8 6 4 11 11 H 1.48503 * 109.47422 * 324.99955 * 8 6 4 12 12 C 1.46502 * 120.00479 * 85.62920 * 3 2 1 13 13 C 1.50702 * 109.46989 * 89.99925 * 12 3 2 14 14 C 1.38205 * 119.60933 * 94.99958 * 13 12 3 15 15 C 1.38661 * 119.18095 * 179.97438 * 14 13 12 16 16 C 1.38631 * 118.43152 * 0.02562 * 15 14 13 17 17 C 1.38309 * 119.15559 * 0.02562 * 16 15 14 18 18 Br 1.89096 * 119.62735 * 179.97438 * 17 16 15 19 19 N 1.31873 * 119.60958 * 274.72814 * 13 12 3 20 20 H 1.08999 * 109.47347 * 300.00707 * 1 2 3 21 21 H 1.09002 * 109.46739 * 60.00740 * 1 2 3 22 22 H 1.09001 * 109.47384 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46739 * 119.99259 * 2 1 3 24 24 H 1.08999 * 109.47347 * 239.99293 * 2 1 3 25 25 H 0.96995 * 120.00066 * 179.97438 * 7 6 4 26 26 H 1.08994 * 109.47191 * 210.00307 * 12 3 2 27 27 H 1.08996 * 109.46770 * 330.00137 * 12 3 2 28 28 H 1.07994 * 120.40496 * 359.96337 * 14 13 12 29 29 H 1.07996 * 120.78111 * 180.02562 * 15 14 13 30 30 H 1.07998 * 120.42060 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3317 1.9966 -1.1826 5 1 2.2070 3.0644 -1.2853 6 6 2.8097 1.2478 -2.2492 7 7 3.4590 0.1249 -2.0264 8 14 2.5315 1.8341 -4.0008 9 1 3.6017 2.7919 -4.3781 10 1 2.5611 0.6704 -4.9229 11 1 1.2104 2.5060 -4.0941 12 6 2.1714 2.1041 1.2650 13 6 3.5595 1.8798 1.8070 14 6 4.5546 2.8005 1.5383 15 6 5.8285 2.5855 2.0419 16 6 6.0552 1.4471 2.7999 17 6 5.0105 0.5694 3.0265 18 35 5.3050 -0.9879 4.0579 19 7 3.8091 0.8099 2.5365 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5137 0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 3.7927 -0.3985 -2.7717 26 1 2.0151 3.1695 1.0958 27 1 1.4374 1.7388 1.9833 28 1 4.3425 3.6765 0.9434 29 1 6.6252 3.2883 1.8482 30 1 7.0352 1.2477 3.2074 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272424664.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:03 Heat of formation + Delta-G solvation = 54.477015 kcal Electronic energy + Delta-G solvation = -14975.416692 eV Core-core repulsion = 12431.582500 eV Total energy + Delta-G solvation = -2543.834192 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.62812 -35.96039 -32.47208 -32.19939 -31.29607 -30.02264 -28.65735 -26.02156 -23.65130 -22.58039 -21.82992 -20.06087 -16.80120 -16.23087 -15.78013 -15.07362 -14.68112 -14.24592 -13.69416 -13.34911 -13.03155 -12.81331 -12.27530 -11.86700 -11.43868 -11.25970 -10.91976 -10.87528 -10.63033 -10.54499 -10.15241 -10.06307 -10.00913 -9.58380 -9.35026 -9.03019 -8.50499 -8.30985 -6.78010 -5.90189 -3.35083 1.45510 1.72220 1.77662 3.30532 3.39355 3.42663 4.16943 4.44437 4.92644 5.17913 5.29320 5.43976 5.56013 5.58085 5.75324 6.11543 6.24493 6.35877 6.49992 6.51140 6.58863 6.66688 6.73299 6.96436 7.10085 7.29165 7.69719 7.77066 8.36424 8.41806 9.06648 9.71173 10.27210 11.09693 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.023968 B = 0.005781 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.957629 B = 4842.389081 C = 5139.925416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 N -0.565 5.565 4 C -0.263 4.263 5 H 0.067 0.933 6 C 0.012 3.988 7 N -0.874 5.874 8 Si 0.896 3.104 9 H -0.285 1.285 10 H -0.289 1.289 11 H -0.277 1.277 12 C 0.184 3.816 13 C 0.144 3.856 14 C -0.143 4.143 15 C -0.074 4.074 16 C -0.166 4.166 17 C 0.128 3.872 18 Br -0.036 7.036 19 N -0.456 5.456 20 H 0.034 0.966 21 H 0.048 0.952 22 H 0.035 0.965 23 H 0.031 0.969 24 H 0.094 0.906 25 H 0.256 0.744 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 1.372 10.759 11.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.011 3.989 3 N -0.283 5.283 4 C -0.393 4.393 5 H 0.085 0.915 6 C -0.190 4.190 7 N -0.514 5.514 8 Si 0.724 3.276 9 H -0.212 1.212 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.056 3.944 13 C 0.002 3.998 14 C -0.165 4.165 15 C -0.100 4.100 16 C -0.190 4.190 17 C -0.090 4.090 18 Br 0.047 6.953 19 N -0.168 5.168 20 H 0.054 0.946 21 H 0.067 0.933 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.112 0.888 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.458 0.057 11.156 11.680 hybrid contribution 0.815 0.980 -1.452 1.932 sum 4.273 1.037 9.704 10.654 Atomic orbital electron populations 1.22253 1.00461 0.98864 1.00433 1.21006 0.90005 0.85654 1.02278 1.44226 1.71732 1.12468 0.99898 1.19141 1.38506 0.93391 0.88249 0.91494 1.25078 0.96780 0.97942 0.99190 1.70100 1.34095 1.16477 1.30764 0.86439 0.78526 0.77901 0.84696 1.21183 1.21441 1.20236 1.20155 0.88005 0.97231 0.88977 1.22944 1.00615 0.87457 0.88817 1.22036 0.93480 1.01229 0.99739 1.21474 0.97146 0.96249 0.95153 1.21664 0.99026 0.95812 1.02448 1.22544 0.92603 0.93972 0.99836 1.96642 1.95491 1.34791 1.68361 1.67274 1.20363 1.19835 1.09290 0.94643 0.93292 0.94553 0.95004 0.88796 0.93368 0.91695 0.92412 0.84707 0.84913 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 10.24 37.16 0.38 -2.91 16 2 C 0.14 3.28 5.99 -4.04 -0.02 3.26 16 3 N -0.57 -13.72 2.45 -174.61 -0.43 -14.15 16 4 C -0.26 -6.86 9.48 -15.06 -0.14 -7.01 16 5 H 0.07 1.70 7.96 -52.49 -0.42 1.28 16 6 C 0.01 0.31 4.82 -17.43 -0.08 0.23 16 7 N -0.87 -24.86 11.45 55.49 0.64 -24.22 16 8 Si 0.90 20.93 29.63 -169.99 -5.04 15.89 16 9 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.18 3.82 6.00 -5.19 -0.03 3.78 16 13 C 0.14 2.97 6.36 -82.59 -0.53 2.45 16 14 C -0.14 -2.62 9.72 -39.44 -0.38 -3.00 16 15 C -0.07 -1.17 10.17 -39.28 -0.40 -1.57 16 16 C -0.17 -2.71 9.83 -39.41 -0.39 -3.09 16 17 C 0.13 2.38 7.16 -17.47 -0.13 2.26 16 18 Br -0.04 -0.58 33.87 -68.01 -2.30 -2.88 16 19 N -0.46 -9.60 10.24 -7.88 -0.08 -9.68 16 20 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 24 H 0.09 2.56 5.31 -51.93 -0.28 2.28 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.06 1.22 7.94 -51.93 -0.41 0.81 16 27 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 28 H 0.14 2.26 8.06 -52.49 -0.42 1.83 16 29 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 283.04 15.07 4.27 4.27 Total: -1.00 -29.10 283.04 -8.29 -37.39 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -3.62 Total: -1.00 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.72 Total: -5.61 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.13 Total: -48.05 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.04 Total: 15.89 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -2.30 Total: -2.88 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.10 -8.29 -37.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272424664.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.871 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds