Wall clock time and date at job start Tue Mar 31 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38335 * 120.74943 * 2 1 4 4 C 1.39084 * 119.10732 * 180.23599 * 3 2 1 5 5 N 1.39050 * 119.69625 * 179.73167 * 4 3 2 6 6 C 1.46500 * 120.00022 * 359.72915 * 5 4 3 7 7 C 1.53006 * 109.46998 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46866 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99962 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00270 * 180.02562 * 8 7 6 11 11 N 1.31522 * 119.99834 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00496 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47141 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47494 * 119.99680 * 12 10 8 15 15 H 1.48505 * 109.47047 * 239.99860 * 12 10 8 16 16 N 1.32416 * 120.60932 * 359.46035 * 4 3 2 17 17 C 1.31949 * 121.63535 * 0.26999 * 16 4 3 18 18 C 1.38143 * 120.83468 * 359.97438 * 17 16 4 19 19 Br 1.89101 * 120.34308 * 180.02562 * 18 17 16 20 20 H 1.08999 * 109.47381 * 270.29934 * 1 2 3 21 21 H 1.09003 * 109.46927 * 30.30085 * 1 2 3 22 22 H 1.09000 * 109.47002 * 150.29872 * 1 2 3 23 23 H 1.08004 * 120.44870 * 359.97438 * 3 2 1 24 24 H 0.97010 * 120.00068 * 179.73291 * 5 4 3 25 25 H 1.09000 * 109.47175 * 60.00125 * 6 5 4 26 26 H 1.09001 * 109.47297 * 299.99632 * 6 5 4 27 27 H 1.08993 * 109.46955 * 300.00226 * 7 6 5 28 28 H 1.09000 * 109.47050 * 60.00054 * 7 6 5 29 29 H 0.96992 * 120.00032 * 180.02562 * 11 10 8 30 30 H 1.07997 * 119.58246 * 179.97438 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2143 1.1889 0.0000 4 6 3.6046 1.1490 -0.0050 5 7 4.3278 2.3367 -0.0107 6 6 3.6251 3.6221 -0.0174 7 6 4.6463 4.7615 -0.0222 8 6 3.9234 6.0838 -0.0285 9 1 2.8437 6.1090 -0.0294 10 6 4.6404 7.2615 -0.0340 11 7 5.9552 7.2308 -0.0333 12 14 3.7445 8.9005 -0.0411 13 1 2.2784 8.6633 -0.0401 14 1 4.1216 9.6761 1.1678 15 1 4.1209 9.6652 -1.2572 16 7 4.2459 -0.0095 0.0010 17 6 3.5983 -1.1590 0.0066 18 6 2.2173 -1.1937 0.0069 19 35 1.3033 -2.8491 0.0156 20 1 -0.3634 0.0054 1.0276 21 1 -0.3633 0.8873 -0.5185 22 1 -0.3633 -0.8927 -0.5092 23 1 1.6940 2.1353 -0.0004 24 1 5.2976 2.3140 -0.0103 25 1 2.9996 3.6990 0.8719 26 1 3.0003 3.6900 -0.9080 27 1 5.2707 4.6934 0.8686 28 1 5.2721 4.6849 -0.9113 29 1 6.4597 8.0593 -0.0368 30 1 4.1548 -2.0845 0.0110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273281009.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:48 Heat of formation + Delta-G solvation = 22.081311 kcal Electronic energy + Delta-G solvation = -14074.708307 eV Core-core repulsion = 11529.469332 eV Total energy + Delta-G solvation = -2545.238975 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.19041 -36.18322 -34.07209 -33.10828 -31.57041 -30.00740 -27.93050 -27.68256 -24.80749 -22.99882 -21.35142 -20.87760 -17.22931 -16.81654 -16.11963 -15.34357 -14.84086 -14.67015 -14.22849 -13.97964 -13.89467 -12.92346 -12.69797 -12.56028 -12.35031 -11.71239 -11.48433 -11.24673 -11.07461 -10.69133 -10.51436 -10.33043 -9.75176 -9.48934 -9.38121 -9.37996 -9.33995 -8.51733 -7.43405 -6.16701 -4.20993 1.29286 1.34509 1.72875 3.22863 3.30414 3.33519 3.51249 3.89381 4.34708 4.61398 4.69841 5.08023 5.16015 5.20443 5.40403 5.49525 5.74684 5.83988 5.88607 6.05785 6.09338 6.21165 6.50977 6.56654 7.16631 7.45522 7.50833 7.80166 7.86386 8.15270 8.32644 8.84793 9.44452 10.94858 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.053604 B = 0.003184 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.218856 B = 8792.511764 C = 9288.980864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.027 3.973 3 C -0.239 4.239 4 C 0.423 3.577 5 N -0.706 5.706 6 C 0.124 3.876 7 C 0.013 3.987 8 C -0.525 4.525 9 H 0.060 0.940 10 C 0.060 3.940 11 N -0.891 5.891 12 Si 0.897 3.103 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.283 1.283 16 N -0.549 5.549 17 C 0.190 3.810 18 C -0.226 4.226 19 Br -0.059 7.059 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.141 0.859 24 H 0.406 0.594 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.263 0.737 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.142 -19.343 0.116 21.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.018 3.982 3 C -0.266 4.266 4 C 0.185 3.815 5 N -0.333 5.333 6 C 0.001 3.999 7 C -0.025 4.025 8 C -0.563 4.563 9 H 0.078 0.922 10 C -0.143 4.143 11 N -0.530 5.530 12 Si 0.725 3.275 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.209 1.209 16 N -0.268 5.268 17 C 0.028 3.972 18 C -0.311 4.311 19 Br 0.025 6.975 20 H 0.100 0.900 21 H 0.094 0.906 22 H 0.097 0.903 23 H 0.158 0.842 24 H 0.241 0.759 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.513 -19.540 0.116 21.733 hybrid contribution -0.595 1.336 0.002 1.463 sum -10.108 -18.204 0.119 20.822 Atomic orbital electron populations 1.20986 0.89972 1.03811 1.03346 1.19857 0.96521 0.90911 0.90918 1.21313 0.92962 0.98873 1.13415 1.18648 0.88604 0.86623 0.87627 1.45269 1.09438 1.02583 1.75984 1.21894 0.97053 0.80823 1.00087 1.19307 0.93937 0.91004 0.98228 1.21026 0.93168 0.90244 1.51897 0.92190 1.25007 0.94869 0.99521 0.94866 1.69967 1.05391 1.27666 1.49929 0.86449 0.79905 0.83431 0.77715 1.19591 1.20872 1.20876 1.67373 1.39746 0.97112 1.22558 1.22331 0.89326 0.95506 0.90015 1.22265 0.95725 0.91299 1.21781 1.96557 1.77343 1.25355 1.98239 0.90043 0.90616 0.90341 0.84168 0.75856 0.92594 0.92592 0.95720 0.95721 0.92762 0.82482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.62 36.01 0.35 -0.92 16 2 C 0.03 0.36 5.92 -104.34 -0.62 -0.26 16 3 C -0.24 -3.58 9.03 -39.23 -0.35 -3.94 16 4 C 0.42 7.07 7.65 -154.98 -1.19 5.88 16 5 N -0.71 -12.43 5.73 -60.41 -0.35 -12.78 16 6 C 0.12 2.38 4.83 -4.04 -0.02 2.36 16 7 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 8 C -0.52 -13.94 9.11 -34.44 -0.31 -14.25 16 9 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 12 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 13 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 16 N -0.55 -8.91 10.39 -12.41 -0.13 -9.04 16 17 C 0.19 2.61 10.93 -17.54 -0.19 2.42 16 18 C -0.23 -2.94 6.24 -39.37 -0.25 -3.18 16 19 Br -0.06 -0.63 31.96 -68.01 -2.17 -2.80 16 20 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 22 H 0.08 0.74 6.78 -51.93 -0.35 0.39 16 23 H 0.14 2.00 6.71 -52.48 -0.35 1.65 16 24 H 0.41 7.09 8.60 -40.82 -0.35 6.74 16 25 H 0.06 1.05 7.92 -51.93 -0.41 0.64 16 26 H 0.06 1.05 7.94 -51.93 -0.41 0.64 16 27 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 280.68 15.07 4.23 4.23 Total: -1.00 -28.34 280.68 -9.05 -37.40 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -3.53 Total: 2.42 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -2.82 Total: -10.19 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.26 Total: -46.77 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.17 Total: -2.80 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.34 -9.05 -37.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273281009.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.480 kcal (2) G-P(sol) polarization free energy of solvation -28.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds