Wall clock time and date at job start Tue Mar 31 2020 05:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38345 * 120.44550 * 2 1 4 4 C 1.38904 * 118.49620 * 180.27989 * 3 2 1 5 5 Br 1.89107 * 120.34347 * 179.71027 * 4 3 2 6 6 C 1.38143 * 119.31016 * 359.73594 * 4 3 2 7 7 N 1.31944 * 120.84225 * 359.97438 * 6 4 3 8 8 C 1.32416 * 121.63301 * 359.97438 * 7 6 4 9 9 N 1.39050 * 119.69583 * 180.02562 * 8 7 6 10 10 C 1.46499 * 119.99939 * 0.02562 * 9 8 7 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46735 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99928 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99611 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00327 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99743 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46999 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46979 * 120.00025 * 16 14 12 19 19 H 1.48498 * 109.46942 * 239.99938 * 16 14 12 20 20 H 1.09000 * 109.47213 * 270.24441 * 1 2 3 21 21 H 1.08999 * 109.46910 * 30.24961 * 1 2 3 22 22 H 1.09005 * 109.46922 * 150.24605 * 1 2 3 23 23 H 1.08004 * 120.75314 * 359.97438 * 3 2 1 24 24 H 1.08008 * 119.57852 * 180.02562 * 6 4 3 25 25 H 0.97000 * 119.99640 * 179.97438 * 9 8 7 26 26 H 1.09002 * 109.47391 * 59.99794 * 10 9 8 27 27 H 1.09001 * 109.46813 * 299.99850 * 10 9 8 28 28 H 1.09001 * 109.47194 * 299.99493 * 11 10 9 29 29 H 1.08992 * 109.47399 * 59.99666 * 11 10 9 30 30 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2080 1.1927 0.0000 4 6 3.5962 1.1454 -0.0060 5 35 4.6065 2.7440 -0.0145 6 6 4.2311 -0.0814 -0.0061 7 7 3.5359 -1.2028 -0.0002 8 6 2.2118 -1.1991 0.0066 9 7 1.5195 -2.4050 0.0133 10 6 2.2551 -3.6719 0.0133 11 6 1.2637 -4.8372 0.0206 12 6 2.0205 -6.1405 0.0212 13 1 3.1005 -6.1378 0.0164 14 6 1.3340 -7.3362 0.0279 15 7 0.0189 -7.3394 0.0342 16 14 2.2720 -8.9516 0.0280 17 1 3.7313 -8.6767 0.0208 18 1 1.9210 -9.7278 1.2444 19 1 1.9093 -9.7346 -1.1806 20 1 -0.3633 0.0044 1.0276 21 1 -0.3633 0.8877 -0.5177 22 1 -0.3633 -0.8922 -0.5100 23 1 1.6877 2.1391 -0.0004 24 1 5.3104 -0.1232 -0.0103 25 1 0.5495 -2.4073 0.0186 26 1 2.8862 -3.7256 0.9004 27 1 2.8777 -3.7305 -0.8796 28 1 0.6409 -4.7788 0.9132 29 1 0.6330 -4.7832 -0.8667 30 1 -0.4640 -8.1806 0.0393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273368621.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:20 Heat of formation + Delta-G solvation = 23.301933 kcal Electronic energy + Delta-G solvation = -14135.957040 eV Core-core repulsion = 11590.770995 eV Total energy + Delta-G solvation = -2545.186045 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.26089 -36.00773 -33.68395 -33.24508 -31.98157 -29.93999 -28.37689 -27.02350 -24.80731 -22.65338 -21.61866 -20.81617 -17.71200 -16.74946 -16.08904 -15.15450 -14.88232 -14.57514 -14.22084 -13.65841 -13.59848 -13.03841 -12.83578 -12.54944 -12.28753 -11.71620 -11.57866 -11.20490 -11.02933 -10.62486 -10.44211 -10.39263 -9.63407 -9.48367 -9.43891 -9.39893 -9.20873 -8.46624 -7.35969 -6.12013 -4.14887 1.23524 1.35363 1.70729 3.26624 3.34152 3.38659 3.57870 3.87261 4.38957 4.58784 4.84783 4.93935 5.02138 5.25306 5.34970 5.57778 5.58879 5.86849 5.96524 6.12516 6.25059 6.34098 6.51071 6.73818 7.30822 7.50058 7.58357 7.68245 7.87502 8.21810 8.41865 8.91273 9.50181 10.99739 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.042802 B = 0.003258 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.025308 B = 8592.258858 C = 9220.530879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.209 4.209 3 C -0.008 4.008 4 C -0.220 4.220 5 Br -0.061 7.061 6 C 0.184 3.816 7 N -0.530 5.530 8 C 0.423 3.577 9 N -0.705 5.705 10 C 0.130 3.870 11 C 0.011 3.989 12 C -0.520 4.520 13 H 0.060 0.940 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.136 0.864 24 H 0.158 0.842 25 H 0.408 0.592 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.021 0.979 29 H 0.021 0.979 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 21.239 -0.072 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.218 4.218 3 C -0.034 4.034 4 C -0.305 4.305 5 Br 0.023 6.977 6 C 0.023 3.977 7 N -0.248 5.248 8 C 0.184 3.816 9 N -0.333 5.333 10 C 0.007 3.993 11 C -0.027 4.027 12 C -0.559 4.559 13 H 0.079 0.921 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.209 1.209 20 H 0.088 0.912 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.154 0.846 24 H 0.176 0.824 25 H 0.245 0.755 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.390 20.635 -0.076 21.327 hybrid contribution -0.578 -0.488 0.006 0.756 sum 4.812 20.147 -0.071 20.714 Atomic orbital electron populations 1.20568 0.90078 1.02854 1.02378 1.20151 0.97255 0.91855 1.12518 1.21030 0.91675 0.97913 0.92823 1.22332 0.95062 0.92571 1.20538 1.96604 1.71910 1.30914 1.98291 1.22429 0.99762 0.85298 0.90238 1.67468 1.06316 1.29816 1.21215 1.18496 0.88343 0.86484 0.88281 1.45374 1.08810 1.03295 1.75825 1.21733 0.95772 0.80990 1.00786 1.19340 0.94336 0.91263 0.97748 1.21068 0.93275 0.90278 1.51252 0.92142 1.25003 0.94892 0.99451 0.94971 1.69961 1.06201 1.26720 1.50433 0.86455 0.80189 0.83291 0.77632 1.19544 1.20926 1.20921 0.91195 0.91314 0.91498 0.84633 0.82444 0.75482 0.92544 0.92568 0.96042 0.96055 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 9.58 36.00 0.34 -0.73 16 2 C -0.21 -2.80 5.92 -104.27 -0.62 -3.42 16 3 C -0.01 -0.09 9.61 -39.30 -0.38 -0.47 16 4 C -0.22 -2.80 6.25 -39.37 -0.25 -3.05 16 5 Br -0.06 -0.65 33.73 -68.01 -2.29 -2.95 16 6 C 0.18 2.60 10.93 -17.54 -0.19 2.41 16 7 N -0.53 -9.00 9.56 -12.41 -0.12 -9.12 16 8 C 0.42 6.93 7.46 -154.98 -1.16 5.78 16 9 N -0.70 -12.25 5.61 -60.42 -0.34 -12.59 16 10 C 0.13 2.69 5.63 -4.04 -0.02 2.67 16 11 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 12 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 16 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 22 H 0.07 0.72 6.57 -51.93 -0.34 0.38 16 23 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 24 H 0.16 1.86 8.06 -52.48 -0.42 1.44 16 25 H 0.41 6.40 6.46 -40.82 -0.26 6.14 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 282.09 15.07 4.25 4.25 Total: -1.00 -29.33 282.09 -9.13 -38.46 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -3.53 Total: 0.81 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -2.82 Total: -9.77 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.28 Total: -47.01 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -2.29 Total: -2.95 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.33 -9.13 -38.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273368621.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.760 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds