Wall clock time and date at job start Tue Mar 31 2020 05:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38345 * 120.44550 * 2 1 4 4 C 1.38904 * 118.49620 * 180.27989 * 3 2 1 5 5 Br 1.89107 * 120.34347 * 179.71027 * 4 3 2 6 6 C 1.38143 * 119.31016 * 359.73594 * 4 3 2 7 7 N 1.31944 * 120.84225 * 359.97438 * 6 4 3 8 8 C 1.32416 * 121.63301 * 359.97438 * 7 6 4 9 9 N 1.39050 * 119.69583 * 180.02562 * 8 7 6 10 10 C 1.46499 * 119.99939 * 0.02562 * 9 8 7 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46735 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99928 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99611 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00327 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99743 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46999 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46979 * 120.00025 * 16 14 12 19 19 H 1.48498 * 109.46942 * 239.99938 * 16 14 12 20 20 H 1.09000 * 109.47213 * 270.24441 * 1 2 3 21 21 H 1.08999 * 109.46910 * 30.24961 * 1 2 3 22 22 H 1.09005 * 109.46922 * 150.24605 * 1 2 3 23 23 H 1.08004 * 120.75314 * 359.97438 * 3 2 1 24 24 H 1.08008 * 119.57852 * 180.02562 * 6 4 3 25 25 H 0.97000 * 119.99640 * 179.97438 * 9 8 7 26 26 H 1.09002 * 109.47391 * 59.99794 * 10 9 8 27 27 H 1.09001 * 109.46813 * 299.99850 * 10 9 8 28 28 H 1.09001 * 109.47194 * 299.99493 * 11 10 9 29 29 H 1.08992 * 109.47399 * 59.99666 * 11 10 9 30 30 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2080 1.1927 0.0000 4 6 3.5962 1.1454 -0.0060 5 35 4.6065 2.7440 -0.0145 6 6 4.2311 -0.0814 -0.0061 7 7 3.5359 -1.2028 -0.0002 8 6 2.2118 -1.1991 0.0066 9 7 1.5195 -2.4050 0.0133 10 6 2.2551 -3.6719 0.0133 11 6 1.2637 -4.8372 0.0206 12 6 2.0205 -6.1405 0.0212 13 1 3.1005 -6.1378 0.0164 14 6 1.3340 -7.3362 0.0279 15 7 0.0189 -7.3394 0.0342 16 14 2.2720 -8.9516 0.0280 17 1 3.7313 -8.6767 0.0208 18 1 1.9210 -9.7278 1.2444 19 1 1.9093 -9.7346 -1.1806 20 1 -0.3633 0.0044 1.0276 21 1 -0.3633 0.8877 -0.5177 22 1 -0.3633 -0.8922 -0.5100 23 1 1.6877 2.1391 -0.0004 24 1 5.3104 -0.1232 -0.0103 25 1 0.5495 -2.4073 0.0186 26 1 2.8862 -3.7256 0.9004 27 1 2.8777 -3.7305 -0.8796 28 1 0.6409 -4.7788 0.9132 29 1 0.6330 -4.7832 -0.8667 30 1 -0.4640 -8.1806 0.0393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273368621.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:19 Heat of formation + Delta-G solvation = 6.624978 kcal Electronic energy + Delta-G solvation = -14136.680207 eV Core-core repulsion = 11590.770995 eV Total energy + Delta-G solvation = -2545.909212 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.38929 -37.44559 -35.24699 -34.61010 -33.33154 -31.45462 -29.58732 -28.11238 -26.59291 -24.04551 -22.74903 -22.45205 -19.06714 -18.38803 -17.62556 -16.56479 -16.21632 -16.13154 -15.48023 -15.12393 -14.99357 -14.26705 -14.01063 -13.74880 -13.45798 -13.17081 -13.11688 -12.67664 -12.65203 -12.45802 -12.03484 -11.58467 -11.41695 -11.29480 -10.78653 -10.56365 -10.48034 -10.41195 -8.58722 -8.25125 -6.35650 0.14030 0.29547 0.70082 1.40661 1.41504 1.54818 2.25078 2.45037 2.75223 3.09831 3.50522 3.86398 3.92527 4.00454 4.35537 4.53631 4.54382 4.61962 4.79135 4.88415 4.90790 5.06785 5.16846 5.34739 5.50525 5.57934 5.73867 6.03754 6.20815 6.39473 6.78381 7.20396 7.34064 8.87229 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.042802 B = 0.003258 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.025308 B = 8592.258858 C = 9220.530879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.203 4.203 3 C -0.006 4.006 4 C -0.214 4.214 5 Br -0.036 7.036 6 C 0.168 3.832 7 N -0.563 5.563 8 C 0.397 3.603 9 N -0.712 5.712 10 C 0.157 3.843 11 C 0.021 3.979 12 C -0.544 4.544 13 H 0.060 0.940 14 C 0.006 3.994 15 N -0.928 5.928 16 Si 0.966 3.034 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.277 1.277 20 H 0.079 0.921 21 H 0.093 0.907 22 H 0.061 0.939 23 H 0.167 0.833 24 H 0.174 0.826 25 H 0.413 0.587 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.004 0.996 29 H 0.004 0.996 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.131 22.660 -0.080 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.211 4.211 3 C -0.033 4.033 4 C -0.298 4.298 5 Br 0.048 6.952 6 C 0.008 3.992 7 N -0.282 5.282 8 C 0.160 3.840 9 N -0.344 5.344 10 C 0.033 3.967 11 C -0.017 4.017 12 C -0.582 4.582 13 H 0.079 0.921 14 C -0.193 4.193 15 N -0.568 5.568 16 Si 0.791 3.209 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.202 1.202 20 H 0.098 0.902 21 H 0.112 0.888 22 H 0.079 0.921 23 H 0.185 0.815 24 H 0.191 0.809 25 H 0.252 0.748 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.870 22.113 -0.084 22.879 hybrid contribution -0.672 -0.740 0.007 1.000 sum 5.198 21.373 -0.076 21.996 Atomic orbital electron populations 1.20652 0.88069 1.03819 1.03318 1.20430 0.98729 0.91016 1.10964 1.21413 0.91544 0.98687 0.91615 1.22543 0.95748 0.93163 1.18376 1.96639 1.71445 1.28971 1.98155 1.22722 1.00499 0.85268 0.90715 1.67371 1.07087 1.31697 1.22022 1.18729 0.88578 0.86797 0.89881 1.45021 1.08865 1.02614 1.77888 1.21100 0.94429 0.81552 0.99588 1.19146 0.94410 0.92226 0.95902 1.21488 0.93619 0.91794 1.51301 0.92141 1.25897 0.95800 1.03181 0.94409 1.70070 1.07719 1.27853 1.51169 0.85378 0.79038 0.78657 0.77869 1.18779 1.20254 1.20247 0.90200 0.88799 0.92059 0.81546 0.80921 0.74796 0.93718 0.93750 0.97785 0.97794 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 9.58 71.23 0.68 -1.25 16 2 C -0.20 -5.12 5.92 -19.64 -0.12 -5.24 16 3 C -0.01 -0.13 9.61 22.45 0.22 0.09 16 4 C -0.21 -4.99 6.25 22.41 0.14 -4.85 16 5 Br -0.04 -0.68 33.73 -20.37 -0.69 -1.36 16 6 C 0.17 4.58 10.93 84.65 0.93 5.51 16 7 N -0.56 -19.16 9.56 -193.17 -1.85 -21.01 16 8 C 0.40 12.96 7.46 133.03 0.99 13.96 16 9 N -0.71 -25.32 5.61 -345.06 -1.94 -27.26 16 10 C 0.16 6.77 5.63 86.38 0.49 7.25 16 11 C 0.02 1.06 5.09 29.85 0.15 1.21 16 12 C -0.54 -30.52 9.11 25.60 0.23 -30.28 16 13 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 14 C 0.01 0.32 5.46 84.66 0.46 0.78 16 15 N -0.93 -54.83 13.29 21.45 0.28 -54.55 16 16 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 17 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.09 1.32 8.10 -2.39 -0.02 1.30 16 22 H 0.06 1.25 6.57 -2.38 -0.02 1.24 16 23 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 24 H 0.17 3.93 8.06 -2.91 -0.02 3.91 16 25 H 0.41 13.31 6.46 -92.71 -0.60 12.71 16 26 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -63.03 282.09 2.56 -60.46 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.55 Total: 10.84 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 4.17 Total: -12.82 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -3.50 Total: -102.82 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -0.69 Total: -1.36 kcal Total: -63.03 2.56 -60.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273368621.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.088 kcal (2) G-P(sol) polarization free energy of solvation -63.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds