Wall clock time and date at job start Tue Mar 31 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99825 * 2 1 4 4 H 1.48497 * 109.47183 * 239.99845 * 3 2 1 5 5 H 1.48504 * 109.47670 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47006 * 120.00110 * 3 2 1 7 7 C 1.37872 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99498 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00736 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47393 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47039 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46943 * 180.02562 * 12 11 10 14 14 C 1.38235 * 120.41152 * 269.72010 * 13 12 11 15 15 N 1.31852 * 120.78570 * 179.75798 * 14 13 12 16 16 C 1.31877 * 121.73409 * 0.52851 * 15 14 13 17 17 C 1.38277 * 120.75163 * 359.73353 * 16 15 14 18 18 Br 1.89099 * 120.42770 * 179.97438 * 17 16 15 19 19 C 1.38608 * 120.41619 * 90.00011 * 13 12 11 20 20 H 0.97002 * 119.99722 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46495 * 59.99680 * 9 7 2 22 22 H 1.08998 * 109.46910 * 300.00180 * 9 7 2 23 23 H 1.09001 * 109.47393 * 60.00436 * 10 9 7 24 24 H 1.08998 * 109.47408 * 300.00082 * 10 9 7 25 25 H 1.00901 * 110.99869 * 56.04956 * 11 10 9 26 26 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 27 27 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 28 28 H 1.08001 * 119.60431 * 0.02562 * 14 13 12 29 29 H 1.08001 * 119.62527 * 179.75527 * 16 15 14 30 30 H 1.07998 * 120.79529 * 359.95005 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5107 -4.9343 -0.0024 12 6 2.4352 -6.0759 -0.0031 13 6 1.6472 -7.3604 -0.0043 14 6 1.2858 -7.9608 1.1872 15 7 0.5923 -9.0822 1.1948 16 6 0.2260 -9.6788 0.0771 17 6 0.5557 -9.1399 -1.1529 18 35 0.0264 -10.0034 -2.7497 19 6 1.2805 -7.9576 -1.2002 20 1 -0.4850 0.8401 -0.0004 21 1 0.6241 -2.5566 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 2.8726 -3.6048 0.8877 24 1 2.8713 -3.6039 -0.8922 25 1 0.8740 -4.9838 -0.7836 26 1 3.0631 -6.0345 -0.8931 27 1 3.0632 -6.0353 0.8869 28 1 1.5713 -7.5037 2.1231 29 1 -0.3382 -10.5985 0.1230 30 1 1.5521 -7.5131 -2.1463 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274215749.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:53 Heat of formation + Delta-G solvation = 25.165114 kcal Electronic energy + Delta-G solvation = -13838.192605 eV Core-core repulsion = 11293.087353 eV Total energy + Delta-G solvation = -2545.105252 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.44491 -36.32795 -33.52685 -33.24348 -32.11688 -29.86576 -29.10414 -25.87767 -23.83890 -23.45399 -21.64212 -20.61390 -17.36345 -16.90930 -16.36118 -15.55221 -14.87121 -14.51453 -14.47028 -13.81852 -13.67756 -13.39853 -12.74277 -12.55311 -12.16572 -11.59794 -11.53109 -11.11349 -10.94968 -10.69541 -10.61403 -10.09338 -9.91240 -9.72479 -9.43546 -9.22883 -9.01118 -8.38536 -7.97981 -6.02733 -4.06007 0.68017 0.94027 1.26965 3.31462 3.36194 3.38021 3.44941 4.20348 4.39993 4.49145 4.55174 4.72663 4.83006 4.93872 5.26199 5.33220 5.53132 5.62035 5.71301 5.98636 6.23087 6.28228 6.33160 6.88981 7.32020 7.63759 7.65549 7.71897 7.84837 8.02422 8.38213 9.00914 9.58072 11.08594 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.033775 B = 0.003030 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.806946 B = 9237.563209 C = 9689.366913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.686 5.686 12 C 0.098 3.902 13 C -0.116 4.116 14 C 0.134 3.866 15 N -0.476 5.476 16 C 0.125 3.875 17 C -0.146 4.146 18 Br -0.040 7.040 19 C -0.044 4.044 20 H 0.262 0.738 21 H 0.014 0.986 22 H 0.026 0.974 23 H 0.061 0.939 24 H 0.018 0.982 25 H 0.338 0.662 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.166 0.834 29 H 0.162 0.838 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.649 -22.581 -4.452 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.317 5.317 12 C -0.032 4.032 13 C -0.120 4.120 14 C -0.024 4.024 15 N -0.184 5.184 16 C -0.034 4.034 17 C -0.228 4.228 18 Br 0.044 6.956 19 C -0.072 4.072 20 H 0.071 0.929 21 H 0.032 0.968 22 H 0.044 0.956 23 H 0.080 0.920 24 H 0.036 0.964 25 H 0.155 0.845 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.183 0.817 29 H 0.179 0.821 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.989 -23.148 -3.547 23.440 hybrid contribution 1.059 1.570 -1.464 2.394 sum 2.048 -21.578 -5.011 22.247 Atomic orbital electron populations 1.69965 1.06053 1.26788 1.50361 1.25003 0.94847 0.99250 0.95210 0.86635 0.79559 0.83052 0.78608 1.20277 1.21241 1.20185 1.21119 0.92946 0.90961 1.51279 0.92761 1.19067 0.94002 0.90345 0.97818 1.22212 0.97079 0.88018 0.98914 1.60678 1.19380 1.01670 1.50000 1.20851 0.93493 0.87043 1.01776 1.21020 0.99822 0.97852 0.93259 1.22922 0.91211 0.89928 0.98303 1.67881 1.11028 1.09835 1.29656 1.22805 0.95754 0.98849 0.86025 1.22920 1.06450 0.99717 0.93692 1.96739 1.90530 1.78314 1.29987 1.21532 0.93733 0.92478 0.99429 0.92874 0.96803 0.95561 0.92019 0.96395 0.84482 0.94327 0.89654 0.81676 0.82100 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.64 5.23 -27.89 -0.15 0.50 16 10 C 0.07 1.31 5.62 -3.82 -0.02 1.29 16 11 N -0.69 -11.43 6.49 -115.06 -0.75 -12.18 16 12 C 0.10 1.26 5.84 -4.98 -0.03 1.23 16 13 C -0.12 -1.39 5.41 -104.49 -0.57 -1.95 16 14 C 0.13 1.62 10.86 -17.54 -0.19 1.42 16 15 N -0.48 -5.96 10.36 -13.23 -0.14 -6.09 16 16 C 0.12 1.37 10.95 -17.52 -0.19 1.18 16 17 C -0.15 -1.58 6.25 -39.37 -0.25 -1.83 16 18 Br -0.04 -0.38 33.74 -68.01 -2.29 -2.67 16 19 C -0.04 -0.49 9.63 -39.25 -0.38 -0.87 16 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.34 5.56 8.72 -39.29 -0.34 5.22 16 26 H 0.04 0.47 8.09 -51.93 -0.42 0.05 16 27 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 28 H 0.17 1.76 8.06 -52.49 -0.42 1.33 16 29 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 286.79 15.07 4.32 4.32 Total: -1.00 -30.01 286.79 -9.00 -39.01 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -3.68 Total: -0.37 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -2.18 Total: -12.43 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.15 Total: -44.28 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -2.29 Total: -2.67 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.01 -9.00 -39.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274215749.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.175 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds