Wall clock time and date at job start Tue Mar 31 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86795 * 120.00099 * 2 1 4 4 H 1.48496 * 109.47242 * 270.00237 * 3 2 1 5 5 H 1.48503 * 109.47013 * 150.00147 * 3 2 1 6 6 H 1.48499 * 109.47074 * 30.00207 * 3 2 1 7 7 C 1.40053 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99613 * 158.15767 * 7 2 1 9 9 C 1.46368 * 120.00433 * 338.15137 * 7 2 1 10 10 O 1.21693 * 119.99767 * 340.49883 * 9 7 2 11 11 N 1.34774 * 120.00148 * 160.50039 * 9 7 2 12 12 C 1.46375 * 119.64563 * 354.15464 * 11 9 7 13 13 C 1.53755 * 109.20370 * 114.91473 * 12 11 9 14 14 S 1.81750 * 108.75529 * 57.83051 * 13 12 11 15 15 C 1.81734 * 102.30386 * 305.34755 * 14 13 12 16 16 C 1.46385 * 119.64674 * 174.43120 * 11 9 7 17 17 H 1.09001 * 109.46559 * 125.08002 * 16 11 9 18 18 C 1.50706 * 109.46476 * 5.08510 * 16 11 9 19 19 N 1.29028 * 124.91102 * 109.91373 * 18 16 11 20 20 C 1.31779 * 117.11757 * 179.97438 * 19 18 16 21 21 C 1.33631 * 114.50774 * 359.97438 * 20 19 18 22 22 S 1.70967 * 124.91678 * 289.60364 * 18 16 11 23 23 H 0.97003 * 119.99862 * 174.17952 * 1 2 3 24 24 H 1.08999 * 109.47038 * 234.91851 * 12 11 9 25 25 H 1.08996 * 109.46926 * 354.90989 * 12 11 9 26 26 H 1.08994 * 109.70288 * 297.99371 * 13 12 11 27 27 H 1.09005 * 109.62429 * 177.62009 * 13 12 11 28 28 H 1.09005 * 109.58518 * 294.73869 * 15 14 13 29 29 H 1.09004 * 109.69639 * 174.40448 * 15 14 13 30 30 H 1.08005 * 122.74507 * 180.02562 * 20 19 18 31 31 H 1.07994 * 126.04496 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4000 5 1 3.5383 1.4401 0.7000 6 1 1.4382 2.6526 0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0289 -1.2464 -0.3486 9 6 1.3539 -2.4352 0.4706 10 8 0.3664 -2.3635 1.1782 11 7 1.8463 -3.6401 0.1209 12 6 2.9542 -3.7205 -0.8323 13 6 4.1911 -4.2955 -0.1227 14 16 3.7688 -5.9270 0.5577 15 6 2.3055 -5.5575 1.5701 16 6 1.2634 -4.8545 0.6937 17 1 0.9540 -5.5229 -0.1098 18 6 0.0658 -4.4894 1.5326 19 7 -1.1593 -4.7527 1.2248 20 6 -2.0890 -4.3621 2.0731 21 6 -1.6223 -3.7349 3.1569 22 16 0.1343 -3.6730 3.0331 23 1 -0.4850 -0.8357 -0.0852 24 1 2.6735 -4.3697 -1.6617 25 1 3.1803 -2.7240 -1.2115 26 1 4.4937 -3.6298 0.6856 27 1 5.0083 -4.3979 -0.8368 28 1 2.5881 -4.9050 2.3963 29 1 1.8871 -6.4841 1.9631 30 1 -3.1420 -4.5354 1.9065 31 1 -2.2165 -3.3387 3.9670 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274802488.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:58 Heat of formation + Delta-G solvation = 31.308681 kcal Electronic energy + Delta-G solvation = -18804.701440 eV Core-core repulsion = 15919.086857 eV Total energy + Delta-G solvation = -2885.614583 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.039 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.45341 -38.02581 -35.37128 -33.02662 -32.18867 -29.39823 -28.83785 -26.13740 -24.73674 -22.89664 -22.27597 -20.03058 -19.55799 -17.72310 -16.69641 -16.16921 -15.41470 -15.30735 -14.88392 -14.50559 -13.97032 -13.86553 -13.54625 -13.32706 -12.95771 -12.61642 -12.47630 -12.16286 -11.97081 -11.64851 -11.34324 -11.01113 -10.86679 -10.57719 -10.35358 -10.21019 -9.68566 -9.02706 -8.86588 -8.64086 -8.47683 -7.95518 -7.42666 -7.06479 -6.50981 -4.86780 1.57443 1.88331 2.38649 2.60371 2.70519 3.16518 3.22980 3.39816 3.57538 3.99450 4.18805 4.26244 4.69746 5.03050 5.13250 5.19177 5.31887 5.49228 5.59475 5.63049 5.78152 5.82749 6.02066 6.12973 6.27269 6.35230 6.92488 7.13336 7.63991 7.76086 8.16956 8.58385 8.61914 9.12708 10.05152 10.37234 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.014029 B = 0.009724 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.442653 B = 2878.826257 C = 4417.280221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.057 3.943 3 Si 1.070 2.930 4 H -0.281 1.281 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.611 4.611 8 H 0.071 0.929 9 C 0.542 3.458 10 O -0.588 6.588 11 N -0.636 5.636 12 C 0.124 3.876 13 C -0.098 4.098 14 S -0.265 6.265 15 C -0.091 4.091 16 C 0.228 3.772 17 H 0.093 0.907 18 C 0.086 3.914 19 N -0.496 5.496 20 C 0.035 3.965 21 C -0.294 4.294 22 S 0.216 5.784 23 H 0.303 0.697 24 H 0.063 0.937 25 H 0.113 0.887 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.157 0.843 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 -7.062 2.555 9.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.167 4.167 3 Si 0.895 3.105 4 H -0.207 1.207 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.646 4.646 8 H 0.089 0.911 9 C 0.353 3.647 10 O -0.477 6.477 11 N -0.373 5.373 12 C -0.002 4.002 13 C -0.248 4.248 14 S -0.037 6.037 15 C -0.242 4.242 16 C 0.118 3.882 17 H 0.110 0.890 18 C -0.191 4.191 19 N -0.214 5.214 20 C -0.120 4.120 21 C -0.434 4.434 22 S 0.474 5.526 23 H 0.117 0.883 24 H 0.081 0.919 25 H 0.131 0.869 26 H 0.106 0.894 27 H 0.126 0.874 28 H 0.105 0.895 29 H 0.128 0.872 30 H 0.174 0.826 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.658 -6.296 2.965 8.969 hybrid contribution -1.334 -0.518 -0.200 1.444 sum 4.324 -6.814 2.765 8.531 Atomic orbital electron populations 1.70145 1.08262 1.34876 1.28850 1.26593 0.95710 1.03039 0.91400 0.83596 0.75407 0.74075 0.77428 1.20666 1.20402 1.20152 1.21824 1.01454 0.92631 1.48687 0.91135 1.18508 0.84249 0.81965 0.79971 1.90880 1.30349 1.85064 1.41421 1.48019 1.37045 1.04591 1.47616 1.21650 0.84326 1.03459 0.90720 1.24066 1.01982 0.95135 1.03579 1.86507 1.37288 1.17473 1.62450 1.23929 0.95949 1.04516 0.99812 1.19256 0.86900 0.88520 0.93518 0.88955 1.26088 0.95351 0.99388 0.98260 1.66026 0.99030 1.25293 1.31091 1.21240 0.99130 1.00529 0.91062 1.26782 0.98505 1.11825 1.06335 1.82868 1.03353 1.51883 1.14542 0.88332 0.91866 0.86886 0.89383 0.87381 0.89525 0.87150 0.82570 0.82329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -22.81 13.21 55.55 0.73 -22.08 16 2 C 0.06 1.49 5.33 -17.36 -0.09 1.40 16 3 Si 1.07 22.29 29.99 -169.99 -5.10 17.20 16 4 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 7 C -0.61 -15.65 8.36 -35.63 -0.30 -15.95 16 8 H 0.07 1.67 6.30 -52.48 -0.33 1.34 16 9 C 0.54 13.71 6.99 -12.99 -0.09 13.62 16 10 O -0.59 -15.95 8.77 5.19 0.05 -15.90 16 11 N -0.64 -13.31 2.78 -168.66 -0.47 -13.78 16 12 C 0.12 2.14 6.11 -3.72 -0.02 2.11 16 13 C -0.10 -1.42 6.68 37.55 0.25 -1.17 16 14 S -0.26 -3.94 22.29 -107.50 -2.40 -6.34 16 15 C -0.09 -1.46 5.76 37.28 0.21 -1.25 16 16 C 0.23 4.39 3.23 -69.02 -0.22 4.17 16 17 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 18 C 0.09 1.83 4.11 -13.45 -0.06 1.77 16 19 N -0.50 -10.89 10.54 -11.86 -0.13 -11.01 16 20 C 0.03 0.69 11.35 -19.19 -0.22 0.47 16 21 C -0.29 -5.57 11.37 29.12 0.33 -5.24 16 22 S 0.22 4.34 19.04 -107.50 -2.05 2.29 16 23 H 0.30 9.25 6.77 -40.82 -0.28 8.98 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.11 2.03 5.46 -51.93 -0.28 1.75 16 26 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.09 1.44 7.60 -51.92 -0.39 1.04 16 29 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 30 H 0.16 2.62 8.06 -52.48 -0.42 2.19 16 31 H 0.16 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 280.17 15.07 4.22 4.22 Total: -1.00 -30.48 280.17 -8.38 -38.85 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -3.04 Total: 6.63 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.20 Total: -0.07 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.14 Total: -46.88 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.05 Total: -15.90 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.10 Total: 17.20 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -4.44 Total: -4.05 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.48 -8.38 -38.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274802488.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.164 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds