Wall clock time and date at job start Tue Mar 31 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34224 * 116.99883 * 2 1 4 4 O 1.20819 * 120.00359 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99795 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46908 * 180.02562 * 5 3 2 7 7 C 1.50707 * 109.46599 * 180.02562 * 6 5 3 8 8 C 1.34219 * 122.12090 * 125.00064 * 7 6 5 9 9 S 1.76252 * 108.19018 * 179.97438 * 8 7 6 10 10 C 1.76157 * 89.87175 * 359.97438 * 9 8 7 11 11 N 1.37916 * 125.44171 * 179.97438 * 10 9 8 12 12 C 1.34776 * 119.99907 * 0.02712 * 11 10 9 13 13 O 1.21854 * 119.99991 * 359.97438 * 12 11 10 14 14 C 1.41231 * 120.00069 * 180.02562 * 12 11 10 15 15 H 1.08000 * 120.00012 * 353.73404 * 14 12 11 16 16 C 1.40160 * 120.00152 * 173.74488 * 14 12 11 17 17 N 1.30627 * 119.99743 * 6.26116 * 16 14 12 18 18 Si 1.86797 * 120.00140 * 186.26227 * 16 14 12 19 19 H 1.48506 * 109.46929 * 94.98292 * 18 16 14 20 20 H 1.48499 * 109.47269 * 214.98276 * 18 16 14 21 21 H 1.48496 * 109.47179 * 334.98576 * 18 16 14 22 22 N 1.30352 * 109.12296 * 0.02562 * 10 9 8 23 23 H 1.08995 * 109.46620 * 59.99713 * 1 2 3 24 24 H 1.08998 * 109.46985 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46829 * 299.99987 * 1 2 3 26 26 H 1.08999 * 109.47051 * 60.00380 * 5 3 2 27 27 H 1.08997 * 109.47278 * 300.00254 * 5 3 2 28 28 H 1.08996 * 109.47363 * 60.00680 * 6 5 3 29 29 H 1.08997 * 109.47101 * 300.00047 * 6 5 3 30 30 H 1.07995 * 125.90356 * 359.97438 * 8 7 6 31 31 H 0.97003 * 119.99796 * 180.02562 * 11 10 9 32 32 H 0.96996 * 119.99335 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 6 5.5052 2.8208 0.0011 8 6 6.1837 3.5096 -0.9299 9 16 7.9048 3.3564 -0.5820 10 6 7.5287 2.3556 0.8180 11 7 8.4546 1.8017 1.6770 12 6 9.7706 2.0119 1.4760 13 8 10.1424 2.6909 0.5349 14 6 10.7189 1.4443 2.3553 15 1 10.3892 0.9276 3.2446 16 6 12.0878 1.5517 2.0742 17 7 12.4926 2.2793 1.0676 18 14 13.3332 0.6546 3.1388 19 1 13.6687 -0.6506 2.5148 20 1 14.5641 1.4763 3.2599 21 1 12.7568 0.4246 4.4878 22 7 6.2355 2.2211 0.9118 23 1 -0.3632 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.9565 0.7806 -0.8892 27 1 3.9558 0.7809 0.8908 28 1 3.6103 3.2359 0.8911 29 1 3.6108 3.2363 -0.8889 30 1 5.7501 4.0621 -1.7502 31 1 8.1587 1.2609 2.4260 32 1 13.4399 2.3533 0.8729 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274840696.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:22 Heat of formation + Delta-G solvation = -88.262028 kcal Electronic energy + Delta-G solvation = -18966.457606 eV Core-core repulsion = 15632.905176 eV Total energy + Delta-G solvation = -3333.552429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.55725 -39.18438 -37.94761 -36.65928 -34.15183 -32.98216 -32.39750 -29.24711 -27.87087 -27.05986 -25.01859 -23.14809 -20.93793 -20.42249 -19.50031 -17.79782 -17.11178 -16.90842 -16.71080 -16.59536 -15.74000 -15.66875 -14.58550 -14.31254 -14.16073 -13.93854 -13.26527 -13.05781 -12.84622 -12.63857 -12.31312 -12.23727 -11.79325 -11.58825 -11.29860 -11.17587 -10.96000 -10.91562 -10.63470 -10.53050 -10.30929 -9.75947 -9.15988 -8.96210 -8.37086 -8.09223 -7.18906 -6.64887 -5.17741 1.59676 2.03912 2.13379 2.57764 2.83318 2.93544 3.02346 3.06306 3.43481 3.76255 4.10277 4.19711 4.67357 4.90002 4.96069 5.05194 5.11263 5.23706 5.34047 5.39829 5.60223 5.82937 5.91538 6.09006 6.23827 6.34301 6.69050 7.01633 7.45344 7.52385 7.65290 7.75470 8.42767 8.54588 8.93224 10.00974 10.23939 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.031947 B = 0.003270 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.250551 B = 8560.654905 C = 9276.156065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.463 3.537 4 O -0.512 6.512 5 C -0.105 4.105 6 C -0.025 4.025 7 C 0.092 3.908 8 C -0.357 4.357 9 S 0.187 5.813 10 C 0.320 3.680 11 N -0.635 5.635 12 C 0.529 3.471 13 O -0.548 6.548 14 C -0.522 4.522 15 H 0.078 0.922 16 C 0.086 3.914 17 N -0.736 5.736 18 Si 0.920 3.080 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.260 1.260 22 N -0.556 5.556 23 H 0.061 0.939 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.159 0.841 31 H 0.407 0.593 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.960 -3.739 -1.531 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.306 3.694 4 O -0.400 6.400 5 C -0.143 4.143 6 C -0.065 4.065 7 C -0.042 4.042 8 C -0.499 4.499 9 S 0.436 5.564 10 C -0.049 4.049 11 N -0.283 5.283 12 C 0.340 3.660 13 O -0.432 6.432 14 C -0.557 4.557 15 H 0.097 0.903 16 C -0.139 4.139 17 N -0.363 5.363 18 Si 0.744 3.256 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.184 1.184 22 N -0.282 5.282 23 H 0.080 0.920 24 H 0.118 0.882 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.134 0.866 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.177 0.823 31 H 0.243 0.757 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.865 -2.850 -2.282 13.373 hybrid contribution -0.728 -0.725 0.913 1.374 sum -13.593 -3.575 -1.369 14.122 Atomic orbital electron populations 1.23238 0.76687 1.03522 1.02451 1.86539 1.23223 1.33846 1.84199 1.24080 0.92476 0.81089 0.71725 1.90654 1.67415 1.36336 1.45558 1.21370 0.85997 1.00176 1.06736 1.19885 0.88799 0.93993 1.03843 1.19365 0.95588 0.97373 0.91855 1.27181 1.00831 1.13862 1.08013 1.86158 0.99887 1.47586 1.22753 1.24377 0.89227 0.96077 0.95221 1.43700 1.05817 1.50758 1.27981 1.17235 0.78354 0.82923 0.87493 1.90622 1.75533 1.43016 1.34004 1.19871 0.90519 1.36333 1.09002 0.90349 1.25812 0.99220 0.93813 0.95046 1.69980 1.16873 1.26802 1.22635 0.86130 0.79303 0.79635 0.80575 1.19316 1.19998 1.18415 1.66252 1.01919 1.30096 1.29951 0.92011 0.88247 0.91960 0.87680 0.86578 0.89968 0.89996 0.82303 0.75698 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.10 10.57 -39.24 -0.41 -4.52 16 3 C 0.46 5.85 7.96 36.01 0.29 6.13 16 4 O -0.51 -7.59 15.73 -18.74 -0.29 -7.88 16 5 C -0.10 -1.29 5.70 -27.88 -0.16 -1.45 16 6 C -0.03 -0.35 4.98 -27.88 -0.14 -0.49 16 7 C 0.09 1.58 6.06 -84.26 -0.51 1.07 16 8 C -0.36 -6.17 11.05 29.32 0.32 -5.84 16 9 S 0.19 3.89 20.52 -107.50 -2.21 1.68 16 10 C 0.32 6.88 8.37 -87.81 -0.74 6.15 16 11 N -0.63 -14.04 5.35 -14.63 -0.08 -14.12 16 12 C 0.53 13.76 7.50 -15.12 -0.11 13.65 16 13 O -0.55 -15.75 12.38 5.05 0.06 -15.69 16 14 C -0.52 -13.21 9.28 -37.72 -0.35 -13.56 16 15 H 0.08 1.79 7.86 -52.49 -0.41 1.37 16 16 C 0.09 2.14 5.49 -17.34 -0.10 2.05 16 17 N -0.74 -19.76 11.75 55.56 0.65 -19.11 16 18 Si 0.92 18.03 29.56 -169.99 -5.03 13.01 16 19 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 21 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 22 N -0.56 -10.79 10.33 -10.10 -0.10 -10.90 16 23 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 24 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 26 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.12 1.45 8.05 -51.93 -0.42 1.04 16 28 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 29 H 0.08 1.04 7.97 -51.93 -0.41 0.62 16 30 H 0.16 2.29 8.06 -52.49 -0.42 1.86 16 31 H 0.41 7.83 8.77 -40.82 -0.36 7.47 16 32 H 0.28 6.70 8.29 -40.82 -0.34 6.36 16 LS Contribution 304.10 15.07 4.58 4.58 Total: -1.00 -31.08 304.10 -6.52 -37.60 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -3.27 Total: 6.27 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -0.43 Total: 9.07 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.47 Total: -44.12 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.65 Total: -28.09 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.01 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -2.21 Total: 1.68 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.08 -6.52 -37.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274840696.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.665 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds