Wall clock time and date at job start Tue Mar 31 2020 05:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00328 * 2 1 4 4 H 1.48505 * 109.46925 * 269.99827 * 3 2 1 5 5 H 1.48501 * 109.47279 * 29.99459 * 3 2 1 6 6 H 1.48494 * 109.47273 * 149.99738 * 3 2 1 7 7 C 1.37885 * 119.99505 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99473 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00349 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47324 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47292 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47525 * 180.02562 * 11 10 9 13 13 C 1.39000 * 120.00401 * 180.02562 * 12 11 10 14 14 C 1.39096 * 119.70120 * 359.97438 * 13 12 11 15 15 C 1.38410 * 119.08610 * 180.28116 * 14 13 12 16 16 Br 1.89095 * 120.75994 * 179.70202 * 15 14 13 17 17 C 1.38997 * 118.48102 * 359.45514 * 15 14 13 18 18 C 1.37974 * 119.31953 * 0.52502 * 17 15 14 19 19 N 1.31988 * 120.86856 * 359.74326 * 18 17 15 20 20 H 0.96998 * 119.99627 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.46884 * 60.00081 * 9 7 2 22 22 H 1.08993 * 109.47248 * 300.00330 * 9 7 2 23 23 H 1.09002 * 109.46710 * 60.00420 * 10 9 7 24 24 H 1.08993 * 109.47591 * 300.00565 * 10 9 7 25 25 H 1.08994 * 109.47217 * 60.00151 * 11 10 9 26 26 H 1.09003 * 109.47615 * 300.00074 * 11 10 9 27 27 H 0.97003 * 119.99676 * 0.02562 * 12 11 10 28 28 H 1.08002 * 120.45356 * 359.97438 * 14 13 12 29 29 H 1.08008 * 120.34072 * 180.28881 * 17 15 14 30 30 H 1.08006 * 119.57045 * 179.76675 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 6 1.4800 -4.9871 0.0020 12 7 2.4319 -6.1007 0.0024 13 6 1.9686 -7.4112 0.0024 14 6 0.5997 -7.6582 0.0025 15 6 0.1523 -8.9680 0.0084 16 35 -1.6979 -9.3579 0.0174 17 6 1.0942 -9.9902 0.0024 18 6 2.4367 -9.6718 0.0018 19 7 2.8343 -8.4132 0.0018 20 1 -0.4849 0.8401 -0.0004 21 1 0.6239 -2.5575 -0.8880 22 1 0.6246 -2.5563 0.8919 23 1 2.8723 -3.6040 0.8910 24 1 2.8711 -3.6049 -0.8889 25 1 0.8530 -5.0450 -0.8877 26 1 0.8537 -5.0447 0.8922 27 1 3.3856 -5.9235 0.0026 28 1 -0.1043 -6.8392 0.0031 29 1 0.7784 -11.0230 0.0020 30 1 3.1721 -10.4629 0.0009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274854532.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:56 Heat of formation + Delta-G solvation = 24.092893 kcal Electronic energy + Delta-G solvation = -13866.426683 eV Core-core repulsion = 11321.274936 eV Total energy + Delta-G solvation = -2545.151747 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.25995 -36.47285 -33.80779 -33.26261 -31.66195 -30.05060 -29.43866 -26.53261 -23.97936 -22.88136 -21.93144 -20.41312 -17.43595 -16.97137 -16.30840 -15.74942 -15.15573 -14.61971 -14.35416 -14.22115 -14.07216 -13.15050 -12.44218 -12.23757 -12.08963 -11.87012 -11.59890 -10.96566 -10.79269 -10.61862 -10.50474 -10.22710 -9.78811 -9.61096 -9.52858 -9.42557 -9.19152 -8.41857 -7.72244 -6.06799 -4.09768 0.98423 1.25012 1.35091 3.22153 3.28468 3.35116 3.38356 3.75103 4.40977 4.52001 4.95047 4.96356 5.09112 5.29488 5.44580 5.51130 5.59016 5.63575 5.91580 5.99146 6.30005 6.47854 6.56752 6.88525 7.04256 7.56253 7.62729 7.67804 7.91289 8.10647 8.32831 8.96554 9.54907 11.04517 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.028685 B = 0.003303 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.869496 B = 8475.580787 C = 9425.697300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.120 4.120 11 C 0.119 3.881 12 N -0.713 5.713 13 C 0.416 3.584 14 C -0.214 4.214 15 C -0.001 4.001 16 Br -0.041 7.041 17 C -0.224 4.224 18 C 0.159 3.841 19 N -0.542 5.542 20 H 0.261 0.739 21 H 0.019 0.981 22 H 0.019 0.981 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.406 0.594 28 H 0.144 0.856 29 H 0.137 0.863 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.343 -22.068 0.027 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.004 4.004 12 N -0.343 5.343 13 C 0.178 3.822 14 C -0.242 4.242 15 C -0.089 4.089 16 Br 0.044 6.956 17 C -0.249 4.249 18 C 0.000 4.000 19 N -0.260 5.260 20 H 0.071 0.929 21 H 0.037 0.963 22 H 0.038 0.962 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.242 0.758 28 H 0.161 0.839 29 H 0.155 0.845 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.469 -21.693 0.036 21.743 hybrid contribution 0.242 0.913 -0.012 0.944 sum -1.227 -20.781 0.024 20.817 Atomic orbital electron populations 1.69955 1.06068 1.26763 1.50518 1.25018 0.94861 0.99328 0.95166 0.86575 0.79836 0.83342 0.78147 1.20620 1.21169 1.19852 1.21192 0.93052 0.90887 1.51056 0.92606 1.19029 0.93794 0.90863 0.97615 1.21871 0.99864 0.92806 1.01288 1.21796 0.92000 0.85351 1.01237 1.44946 1.10236 1.01114 1.77955 1.18396 0.88180 0.86371 0.89283 1.21409 0.95600 0.96389 1.10753 1.21872 0.91013 0.95411 1.00613 1.96748 1.06478 1.95009 1.97348 1.21695 0.93524 0.99350 1.10309 1.22404 0.93703 0.92238 0.91675 1.67232 1.38387 0.99842 1.20554 0.92891 0.96258 0.96243 0.92479 0.92484 0.91902 0.91912 0.75764 0.83855 0.84482 0.82167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.27 5.27 -26.74 -0.14 -2.41 16 11 C 0.12 1.89 4.89 -4.04 -0.02 1.87 16 12 N -0.71 -10.36 5.73 -60.43 -0.35 -10.71 16 13 C 0.42 6.02 7.65 -155.02 -1.19 4.83 16 14 C -0.21 -2.92 9.11 -39.20 -0.36 -3.28 16 15 C 0.00 -0.02 6.27 -39.24 -0.25 -0.26 16 16 Br -0.04 -0.45 33.77 -68.01 -2.30 -2.75 16 17 C -0.22 -2.37 9.89 -39.40 -0.39 -2.76 16 18 C 0.16 1.74 11.17 -17.58 -0.20 1.54 16 19 N -0.54 -7.48 10.39 -12.45 -0.13 -7.61 16 20 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 21 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 26 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 27 H 0.41 5.60 8.60 -40.82 -0.35 5.25 16 28 H 0.14 1.93 6.71 -52.49 -0.35 1.58 16 29 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 30 H 0.16 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 283.70 15.07 4.28 4.28 Total: -1.00 -29.45 283.70 -9.47 -38.92 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -3.60 Total: 0.37 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -3.08 Total: -13.18 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.26 Total: -43.89 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -2.30 Total: -2.75 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.45 -9.47 -38.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274854532.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.008 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds