Wall clock time and date at job start Tue Mar 31 2020 05:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38884 * 120.75018 * 2 1 4 4 C 1.38017 * 119.33354 * 179.79856 * 3 2 1 5 5 N 1.31981 * 120.87551 * 0.48510 * 4 3 2 6 6 C 1.32381 * 121.63081 * 359.75091 * 5 4 3 7 7 N 1.39046 * 119.70797 * 179.97438 * 6 5 4 8 8 C 1.46504 * 120.00242 * 0.02562 * 7 6 5 9 9 C 1.53000 * 109.46869 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.46566 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00309 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99777 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00088 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00023 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46791 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46884 * 120.00370 * 14 12 10 17 17 H 1.48496 * 109.46932 * 240.00284 * 14 12 10 18 18 C 1.38363 * 120.74970 * 180.28393 * 2 1 3 19 19 Br 1.89098 * 120.46101 * 359.95350 * 18 2 1 20 20 H 1.09002 * 109.47152 * 269.71709 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.71810 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.71790 * 1 2 3 23 23 H 1.07995 * 120.33431 * 0.02628 * 3 2 1 24 24 H 1.08001 * 119.56246 * 180.23468 * 4 3 2 25 25 H 0.97001 * 119.99935 * 180.02562 * 7 6 5 26 26 H 1.09001 * 109.47073 * 300.00294 * 8 7 6 27 27 H 1.08997 * 109.46907 * 60.00256 * 8 7 6 28 28 H 1.08997 * 109.47218 * 299.99611 * 9 8 7 29 29 H 1.08997 * 109.47164 * 60.00393 * 9 8 7 30 30 H 0.96999 * 120.00251 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1936 0.0000 4 6 3.5969 1.1595 0.0042 5 7 4.2460 0.0103 -0.0013 6 6 3.6060 -1.1485 -0.0062 7 7 4.3301 -2.3355 -0.0125 8 6 5.7947 -2.3002 -0.0132 9 6 6.3393 -3.7300 -0.0213 10 6 7.8459 -3.6936 -0.0226 11 1 8.3632 -2.7456 -0.0177 12 6 8.5639 -4.8707 -0.0289 13 7 7.9339 -6.0252 -0.0344 14 14 10.4313 -4.8257 -0.0298 15 1 10.8924 -3.4141 -0.0224 16 1 10.9437 -5.5198 1.1788 17 1 10.9423 -5.5074 -1.2461 18 6 2.2145 -1.1891 -0.0059 19 35 1.3038 -2.8463 -0.0128 20 1 -0.3633 -0.0051 1.0277 21 1 -0.3633 -0.8875 -0.5182 22 1 -0.3633 0.8925 -0.5095 23 1 1.6950 2.1389 0.0004 24 1 4.1528 2.0854 0.0081 25 1 3.8655 -3.1870 -0.0165 26 1 6.1451 -1.7733 -0.9007 27 1 6.1460 -1.7823 0.8792 28 1 5.9890 -4.2573 0.8661 29 1 5.9880 -4.2476 -0.9139 30 1 8.4390 -6.8533 -0.0393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286789947.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:49 Heat of formation + Delta-G solvation = 24.421068 kcal Electronic energy + Delta-G solvation = -14218.418838 eV Core-core repulsion = 11673.281322 eV Total energy + Delta-G solvation = -2545.137516 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.15079 -36.04640 -33.99641 -33.18604 -31.41074 -29.83755 -28.30065 -27.56384 -24.54296 -22.89235 -21.55529 -20.54171 -17.27717 -16.72141 -16.02215 -15.57279 -14.84611 -14.54612 -14.17143 -13.76709 -13.74999 -12.86915 -12.81097 -12.61835 -12.24801 -11.69151 -11.20782 -11.14246 -11.09021 -10.61807 -10.59865 -10.19611 -9.62575 -9.59325 -9.33642 -9.16951 -9.12886 -8.42623 -7.40006 -6.07592 -4.10534 1.15417 1.52805 1.75535 3.29165 3.36408 3.40881 3.59598 3.92091 4.42373 4.60731 4.73210 5.07939 5.10102 5.29399 5.41251 5.45474 5.50870 5.81582 5.90584 6.21892 6.33118 6.38737 6.58924 6.78459 7.36779 7.57077 7.64266 7.71715 7.92078 8.26405 8.46686 8.95567 9.54099 11.04177 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.028652 B = 0.004616 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.010093 B = 6064.578763 C = 7015.839465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.029 3.971 3 C -0.253 4.253 4 C 0.170 3.830 5 N -0.535 5.535 6 C 0.440 3.560 7 N -0.704 5.704 8 C 0.131 3.869 9 C 0.010 3.990 10 C -0.519 4.519 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.230 4.230 19 Br -0.047 7.047 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.133 0.867 24 H 0.158 0.842 25 H 0.409 0.591 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.075 11.451 0.091 20.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.019 3.981 3 C -0.278 4.278 4 C 0.010 3.990 5 N -0.255 5.255 6 C 0.199 3.801 7 N -0.332 5.332 8 C 0.008 3.992 9 C -0.028 4.028 10 C -0.558 4.558 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.317 4.317 19 Br 0.036 6.964 20 H 0.099 0.901 21 H 0.096 0.904 22 H 0.093 0.907 23 H 0.151 0.849 24 H 0.175 0.825 25 H 0.247 0.753 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.207 10.562 0.086 19.345 hybrid contribution 0.177 -0.037 0.013 0.181 sum -16.030 10.526 0.098 19.177 Atomic orbital electron populations 1.20981 0.90093 1.03721 1.03264 1.19881 0.96393 0.91100 0.90708 1.21576 0.95232 0.97650 1.13315 1.22553 0.91609 0.95172 0.89619 1.67490 1.39287 0.96867 1.21825 1.18210 0.86100 0.87915 0.87898 1.45503 1.08294 1.04002 1.75397 1.21734 0.75349 1.01300 1.00773 1.19347 0.96370 0.89177 0.97862 1.21062 0.90724 0.92766 1.51219 0.92152 1.25005 0.98859 0.95429 0.95029 1.69973 1.35553 0.97297 1.50427 0.86457 0.85281 0.78231 0.77603 1.19570 1.20952 1.20946 1.21967 0.93553 0.92276 1.23886 1.96587 1.76493 1.25201 1.98080 0.90092 0.90366 0.90747 0.84939 0.82518 0.75282 0.92511 0.92510 0.95992 0.95990 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.63 36.01 0.35 -0.80 16 2 C 0.03 0.36 5.92 -104.34 -0.62 -0.26 16 3 C -0.25 -2.92 9.81 -39.42 -0.39 -3.30 16 4 C 0.17 2.24 11.17 -17.57 -0.20 2.04 16 5 N -0.54 -9.20 9.57 -12.41 -0.12 -9.32 16 6 C 0.44 7.75 7.48 -154.96 -1.16 6.59 16 7 N -0.70 -13.47 5.66 -60.39 -0.34 -13.81 16 8 C 0.13 2.84 5.63 -4.04 -0.02 2.82 16 9 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 10 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 11 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 14 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C -0.23 -3.47 6.26 -39.17 -0.25 -3.72 16 19 Br -0.05 -0.65 30.38 -68.01 -2.07 -2.71 16 20 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.08 0.74 6.77 -51.93 -0.35 0.39 16 22 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 23 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 24 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 25 H 0.41 7.56 6.86 -40.82 -0.28 7.28 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 279.90 15.07 4.22 4.22 Total: -1.00 -30.35 279.90 -8.98 -39.33 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -3.55 Total: 1.41 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -2.83 Total: -9.81 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.28 Total: -48.92 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -2.07 Total: -2.71 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.35 -8.98 -39.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286789947.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.748 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds