Wall clock time and date at job start Tue Mar 31 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46766 * 2 1 4 4 C 1.50704 * 109.47041 * 240.00231 * 2 1 3 5 5 H 1.07994 * 120.00091 * 240.00026 * 4 2 1 6 6 C 1.37878 * 119.99671 * 59.99489 * 4 2 1 7 7 N 1.31510 * 120.00514 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99652 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47170 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46916 * 120.00719 * 8 6 4 11 11 H 1.48498 * 109.47197 * 240.00381 * 8 6 4 12 12 N 1.46496 * 109.47467 * 120.00303 * 2 1 3 13 13 C 1.46501 * 119.99980 * 59.99763 * 12 2 1 14 14 S 1.65598 * 120.00008 * 240.00134 * 12 2 1 15 15 O 1.42104 * 106.40229 * 336.45843 * 14 12 2 16 16 O 1.42100 * 106.40244 * 203.53601 * 14 12 2 17 17 C 1.76197 * 107.22060 * 89.99654 * 14 12 2 18 18 C 1.35055 * 125.61683 * 90.00177 * 17 14 12 19 19 C 1.40475 * 107.10934 * 179.97438 * 18 17 14 20 20 C 1.36547 * 106.70482 * 359.97438 * 19 18 17 21 21 C 1.43210 * 125.98209 * 180.02562 * 20 19 18 22 22 N 7.03375 * 71.29667 * 47.94120 * 2 1 3 23 23 O 1.34052 * 125.61902 * 269.97749 * 17 14 12 24 24 H 1.08996 * 109.47178 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46942 * 299.99849 * 1 2 3 26 26 H 1.08997 * 109.47443 * 59.99533 * 1 2 3 27 27 H 0.96997 * 120.00491 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.46904 * 270.00080 * 13 12 2 29 29 H 1.08998 * 109.47011 * 30.00002 * 13 12 2 30 30 H 1.08998 * 109.46686 * 150.00526 * 13 12 2 31 31 H 1.08001 * 126.44338 * 0.23881 * 18 17 14 32 32 H 1.08000 * 126.64089 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 3.1473 -2.2862 -3.6039 10 1 1.1676 -1.5864 -4.8166 11 1 3.1470 -0.1856 -4.8161 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1141 2.2861 15 8 3.5794 1.1830 1.5748 16 8 3.7119 -0.8790 2.9813 17 6 1.8962 0.8534 3.4710 18 6 1.4749 0.2778 4.6178 19 6 0.6395 1.2048 5.2629 20 6 0.5941 2.3129 4.4665 21 6 -0.1414 3.5122 4.7344 22 7 -0.7255 4.4630 4.9465 23 8 1.3628 2.0801 3.3830 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.7092 1.1618 -3.4843 28 1 0.7377 -2.1444 1.9993 29 1 1.5295 -2.5968 0.4707 30 1 2.4630 -2.5818 1.9862 31 1 1.7350 -0.7081 4.9741 32 1 0.1317 1.0674 6.2062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286792420.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:05 Heat of formation + Delta-G solvation = -10.904495 kcal Electronic energy + Delta-G solvation = -20422.371110 eV Core-core repulsion = 17092.173155 eV Total energy + Delta-G solvation = -3330.197955 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.94483 -37.01958 -36.96077 -36.34776 -35.54312 -33.55447 -32.68824 -30.64067 -29.22068 -25.68585 -25.27124 -24.07957 -22.41687 -20.90352 -19.75210 -18.80511 -17.64253 -17.19954 -16.56045 -16.29623 -15.45006 -14.81839 -14.61070 -14.05812 -13.75697 -13.71673 -13.59428 -13.36356 -13.31843 -12.81283 -12.77014 -12.21594 -12.00299 -11.83458 -11.50769 -11.35854 -11.31541 -11.00234 -10.89855 -10.55610 -10.43635 -10.30269 -10.13884 -9.37715 -9.29343 -8.52254 -8.16866 -6.13504 -4.21254 0.33251 0.58518 1.72810 1.77414 2.65960 2.94772 3.25169 3.32939 3.34712 3.38787 3.82720 3.98910 4.34888 4.44137 4.79387 5.04612 5.14050 5.18681 5.33142 5.53311 5.85676 5.97357 6.18364 6.39327 6.55736 6.69939 6.73236 6.91578 6.93334 7.26308 7.52809 7.70100 7.95841 8.16955 8.80785 9.44878 10.92288 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.005682 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.128071 B = 4926.548805 C = 5606.515294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.263 3.737 3 H 0.065 0.935 4 C -0.522 4.522 5 H 0.067 0.933 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 N -0.964 5.964 13 C 0.089 3.911 14 S 2.694 3.306 15 O -0.927 6.927 16 O -0.946 6.946 17 C -0.524 4.524 18 C -0.107 4.107 19 C -0.142 4.142 20 C 0.075 3.925 21 C 0.290 3.710 22 N -0.366 5.366 23 O -0.092 6.092 24 H 0.036 0.964 25 H 0.010 0.990 26 H 0.095 0.905 27 H 0.264 0.736 28 H 0.042 0.958 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.178 0.822 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.328 -3.584 13.177 13.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.160 3.840 3 H 0.083 0.917 4 C -0.561 4.561 5 H 0.085 0.915 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 N -0.806 5.806 13 C -0.057 4.057 14 S 2.774 3.226 15 O -0.917 6.917 16 O -0.936 6.936 17 C -0.652 4.652 18 C -0.127 4.127 19 C -0.165 4.165 20 C 0.018 3.982 21 C -0.027 4.027 22 N -0.044 5.044 23 O 0.018 5.982 24 H 0.055 0.945 25 H 0.029 0.971 26 H 0.113 0.887 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.195 0.805 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.394 -1.689 13.167 13.348 hybrid contribution -0.349 -0.698 -0.439 0.895 sum -1.743 -2.387 12.728 13.067 Atomic orbital electron populations 1.22141 0.97988 0.99991 1.00802 1.18950 0.91615 0.93452 0.79939 0.91748 1.21308 1.32024 1.13193 0.89620 0.91498 1.24914 0.94850 0.94975 0.99066 1.69864 1.36253 1.22563 1.23907 0.86405 0.78610 0.79644 0.82536 1.19606 1.20984 1.20837 1.57495 1.70332 1.19527 1.33291 1.21483 0.99266 0.81471 1.03489 1.02726 0.73789 0.73680 0.72430 1.93623 1.72419 1.55675 1.69950 1.93586 1.66406 1.58013 1.75598 1.37315 1.18364 0.91059 1.18472 1.21884 0.96346 1.01578 0.92931 1.22054 1.01498 0.91460 1.01516 1.17169 0.98715 0.91790 0.90494 1.23465 0.93340 0.90924 0.94929 1.81331 1.08671 1.07912 1.06470 1.84332 1.47364 1.29604 1.36932 0.94527 0.97131 0.88653 0.92581 0.93922 0.88939 0.91296 0.80469 0.81031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.97 37.16 0.33 -2.93 16 2 C 0.26 6.08 2.62 -69.08 -0.18 5.89 16 3 H 0.06 1.66 6.91 -51.93 -0.36 1.30 16 4 C -0.52 -13.21 7.99 -34.44 -0.28 -13.49 16 5 H 0.07 1.65 7.33 -52.49 -0.38 1.27 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -23.98 11.32 55.43 0.63 -23.35 16 8 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 9 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.96 -18.20 3.06 -115.85 -0.35 -18.55 16 13 C 0.09 1.36 9.65 59.85 0.58 1.94 16 14 S 2.69 48.05 5.84 -107.50 -0.63 47.42 16 15 O -0.93 -20.18 16.58 -57.25 -0.95 -21.13 16 16 O -0.95 -16.55 16.43 -57.17 -0.94 -17.49 16 17 C -0.52 -7.90 7.35 29.60 0.22 -7.68 16 18 C -0.11 -1.22 10.59 -39.87 -0.42 -1.65 16 19 C -0.14 -1.44 10.84 -39.35 -0.43 -1.86 16 20 C 0.07 0.96 7.08 -38.26 -0.27 0.69 16 21 C 0.29 3.73 15.89 -22.47 -0.36 3.37 16 22 N -0.37 -5.14 18.54 41.84 0.78 -4.37 16 23 O -0.09 -1.47 10.67 4.81 0.05 -1.42 16 24 H 0.04 0.74 7.67 -51.93 -0.40 0.34 16 25 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.10 2.33 6.07 -51.93 -0.32 2.01 16 27 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.50 7.02 -51.93 -0.36 1.13 16 30 H 0.07 0.93 7.02 -51.93 -0.36 0.57 16 31 H 0.18 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 302.30 15.07 4.56 4.56 Total: -1.00 -30.26 302.30 -5.79 -36.06 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: -3.01 Total: -2.85 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -0.90 Total: -14.12 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 1.05 Total: -46.27 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -1.84 Total: -40.03 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 48.05 SS G_CDS: -0.63 Total: 47.42 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.26 -5.79 -36.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286792420.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.151 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds