Wall clock time and date at job start Tue Mar 31 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.46500 * 119.99929 * 300.00372 * 12 2 1 14 14 S 1.65597 * 119.99996 * 119.99730 * 12 2 1 15 15 O 1.42101 * 106.40698 * 203.54280 * 14 12 2 16 16 O 1.42097 * 106.40520 * 336.46467 * 14 12 2 17 17 C 1.76207 * 107.21614 * 90.00370 * 14 12 2 18 18 C 1.35044 * 125.61592 * 90.00331 * 17 14 12 19 19 C 1.40474 * 107.10976 * 179.97438 * 18 17 14 20 20 C 1.36541 * 106.70694 * 359.97438 * 19 18 17 21 21 C 1.43206 * 125.98697 * 180.02562 * 20 19 18 22 22 N 7.03370 * 168.57857 * 28.16874 * 2 1 3 23 23 O 1.34053 * 125.61608 * 269.69079 * 17 14 12 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 28 28 H 1.08994 * 109.47032 * 89.99688 * 13 12 2 29 29 H 1.08998 * 109.46624 * 209.99482 * 13 12 2 30 30 H 1.08998 * 109.46783 * 329.99227 * 13 12 2 31 31 H 1.07997 * 126.44821 * 359.95172 * 18 17 14 32 32 H 1.07998 * 126.64334 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.8229 -0.5646 -3.5259 16 8 2.6904 1.4972 -2.1193 17 6 4.6445 -0.1182 -1.7879 18 6 5.4499 -1.1275 -2.1834 19 6 6.6920 -0.9351 -1.5562 20 6 6.5792 0.1969 -0.8010 21 6 7.6084 0.7722 0.0118 22 7 8.4244 1.2279 0.6575 23 8 5.3303 0.6810 -0.9585 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.9026 -0.5283 4.4376 28 1 0.7377 -2.1444 -1.9993 29 1 2.4629 -2.5818 -1.9863 30 1 1.5296 -2.5968 -0.4707 31 1 5.1881 -1.9316 -2.8551 32 1 7.5669 -1.5607 -1.6534 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286792422.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:07 Heat of formation + Delta-G solvation = -2.800903 kcal Electronic energy + Delta-G solvation = -20625.484055 eV Core-core repulsion = 17295.637498 eV Total energy + Delta-G solvation = -3329.846557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.83118 -37.15836 -36.83788 -36.60588 -35.70939 -33.45120 -32.63705 -30.56047 -30.16362 -25.93656 -25.14610 -24.01592 -22.32525 -21.06862 -19.65412 -18.86931 -17.69512 -17.29731 -16.73680 -16.28737 -15.72376 -15.00028 -14.57503 -13.97239 -13.90202 -13.60767 -13.56209 -13.33565 -13.25929 -12.96578 -12.66190 -12.47387 -12.23733 -12.13037 -11.99725 -11.74520 -11.45377 -11.32841 -11.07894 -10.66956 -10.33719 -10.21725 -9.67655 -9.55883 -9.17746 -8.72993 -8.33037 -6.23630 -4.26380 0.33367 0.62344 1.83367 1.87348 2.77140 3.08391 3.18244 3.20271 3.32993 3.34166 3.80309 3.97604 4.27553 4.54145 4.71542 5.07789 5.12792 5.24248 5.31676 5.39908 5.92930 5.95343 6.02819 6.15640 6.28950 6.42377 6.49182 6.52815 6.75627 7.04550 7.09897 7.19612 7.49590 8.32204 8.77211 9.36275 10.88482 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.014428 B = 0.008134 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.182854 B = 3441.703809 C = 4602.228694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.234 3.766 3 H 0.063 0.937 4 C -0.535 4.535 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.293 1.293 11 H -0.259 1.259 12 N -0.961 5.961 13 C 0.096 3.904 14 S 2.704 3.296 15 O -0.943 6.943 16 O -0.938 6.938 17 C -0.522 4.522 18 C -0.104 4.104 19 C -0.144 4.144 20 C 0.083 3.917 21 C 0.290 3.710 22 N -0.366 5.366 23 O -0.089 6.089 24 H 0.061 0.939 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.267 0.733 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.177 0.823 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.497 -2.530 -11.585 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.130 3.870 3 H 0.080 0.920 4 C -0.573 4.573 5 H 0.102 0.898 6 C -0.126 4.126 7 N -0.527 5.527 8 Si 0.704 3.296 9 H -0.201 1.201 10 H -0.221 1.221 11 H -0.183 1.183 12 N -0.802 5.802 13 C -0.049 4.049 14 S 2.785 3.215 15 O -0.933 6.933 16 O -0.928 6.928 17 C -0.652 4.652 18 C -0.124 4.124 19 C -0.166 4.166 20 C 0.026 3.974 21 C -0.026 4.026 22 N -0.044 5.044 23 O 0.021 5.979 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.194 0.806 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.418 -1.090 -10.950 11.858 hybrid contribution -0.207 0.042 0.579 0.616 sum 4.211 -1.048 -10.371 11.243 Atomic orbital electron populations 1.22403 0.98037 1.01664 0.99524 1.19266 0.91410 0.93666 0.82706 0.91988 1.21173 1.33229 1.14629 0.88311 0.89813 1.24875 0.95476 0.96521 0.95690 1.69863 1.44801 1.40012 0.98060 0.87046 0.80788 0.83920 0.77866 1.20094 1.22056 1.18348 1.57242 1.61069 1.22394 1.39530 1.21433 0.99684 0.80779 1.03024 1.02282 0.71690 0.74102 0.73443 1.93614 1.84522 1.75992 1.39141 1.93593 1.82375 1.30789 1.86010 1.36840 1.21820 1.01186 1.05391 1.21837 0.92235 0.98432 0.99943 1.22021 1.00038 0.96517 0.98073 1.17139 0.83803 0.95866 1.00551 1.23452 0.92434 0.93887 0.92800 1.81314 1.10015 1.05695 1.07379 1.84317 1.19396 1.43804 1.50353 0.92007 0.94362 0.93018 0.92316 0.92741 0.92336 0.89124 0.80577 0.81038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 8.67 37.16 0.32 -2.79 16 2 C 0.23 5.07 2.21 -69.08 -0.15 4.91 16 3 H 0.06 1.43 5.97 -51.93 -0.31 1.12 16 4 C -0.53 -13.47 8.57 -34.44 -0.30 -13.77 16 5 H 0.08 2.23 7.58 -52.49 -0.40 1.84 16 6 C 0.08 2.10 5.45 -17.82 -0.10 2.00 16 7 N -0.89 -25.53 13.96 55.43 0.77 -24.76 16 8 Si 0.87 20.63 24.37 -169.99 -4.14 16.49 16 9 H -0.27 -6.19 6.87 56.52 0.39 -5.81 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 11 H -0.26 -5.93 6.53 56.52 0.37 -5.56 16 12 N -0.96 -17.30 3.06 -115.85 -0.35 -17.65 16 13 C 0.10 1.42 9.29 59.85 0.56 1.97 16 14 S 2.70 45.99 5.79 -107.50 -0.62 45.36 16 15 O -0.94 -15.46 16.90 -57.17 -0.97 -16.43 16 16 O -0.94 -18.73 16.58 -57.26 -0.95 -19.68 16 17 C -0.52 -8.27 7.35 29.60 0.22 -8.05 16 18 C -0.10 -1.29 10.59 -39.87 -0.42 -1.71 16 19 C -0.14 -1.65 10.84 -39.35 -0.43 -2.08 16 20 C 0.08 1.20 7.08 -38.27 -0.27 0.93 16 21 C 0.29 4.23 15.89 -22.47 -0.36 3.88 16 22 N -0.37 -5.73 18.54 41.84 0.78 -4.96 16 23 O -0.09 -1.53 10.67 4.78 0.05 -1.48 16 24 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 27 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.70 7.79 -51.93 -0.40 0.29 16 30 H 0.09 1.43 7.02 -51.93 -0.36 1.07 16 31 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 296.31 15.07 4.47 4.47 Total: -1.00 -31.06 296.31 -4.81 -35.88 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -2.92 Total: -2.54 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -0.93 Total: -14.70 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 1.19 Total: -47.37 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -1.86 Total: -37.58 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.14 Total: 16.49 kcal Atomic # 16 Polarization: 45.99 SS G_CDS: -0.62 Total: 45.36 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.06 -4.81 -35.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286792422.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.077 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds