Wall clock time and date at job start Tue Mar 31 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.36554 * 125.98478 * 144.11918 * 3 2 1 5 5 C 1.40475 * 106.70393 * 179.97438 * 4 3 2 6 6 C 1.35046 * 107.11194 * 359.97438 * 5 4 3 7 7 S 1.76203 * 125.61758 * 180.02562 * 6 5 4 8 8 O 1.42099 * 106.40416 * 203.53977 * 7 6 5 9 9 O 1.42099 * 106.40086 * 336.45812 * 7 6 5 10 10 N 1.65602 * 107.21622 * 89.99838 * 7 6 5 11 11 C 1.46500 * 120.00052 * 65.00491 * 10 7 6 12 12 C 1.52992 * 109.47283 * 165.00017 * 11 10 7 13 13 C 1.52999 * 109.47290 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47426 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99787 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00259 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99968 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00068 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47264 * 60.00568 * 18 16 14 20 20 H 1.48504 * 109.47112 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47531 * 300.00383 * 18 16 14 22 22 O 1.34056 * 108.76743 * 359.97438 * 6 5 4 23 23 H 1.07995 * 126.64402 * 0.23699 * 4 3 2 24 24 H 1.08001 * 126.44036 * 179.97438 * 5 4 3 25 25 H 0.97001 * 119.99875 * 245.00030 * 10 7 6 26 26 H 1.09005 * 109.46633 * 284.99648 * 11 10 7 27 27 H 1.09000 * 109.47388 * 44.99347 * 11 10 7 28 28 H 1.09005 * 109.46985 * 299.99416 * 12 11 10 29 29 H 1.09000 * 109.47456 * 59.99371 * 12 11 10 30 30 H 1.09005 * 109.46454 * 299.99525 * 13 12 11 31 31 H 1.09000 * 109.47561 * 59.99220 * 13 12 11 32 32 H 0.96994 * 120.00220 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3700 0.8963 -0.6476 5 6 4.6961 0.5214 -0.3753 6 6 4.6455 -0.5715 0.4164 7 16 6.0384 -1.4446 1.0505 8 8 5.5908 -2.7634 1.3331 9 8 7.1215 -1.1624 0.1750 10 7 6.4244 -0.7595 2.5079 11 6 5.4860 -0.8461 3.6296 12 6 6.2086 -0.4830 4.9283 13 6 5.2287 -0.5741 6.0998 14 6 5.9406 -0.2171 7.3792 15 1 6.9874 0.0479 7.3588 16 6 5.2556 -0.2286 8.5757 17 7 3.9810 -0.5517 8.6005 18 14 6.1382 0.2132 10.1615 19 1 6.6673 1.5974 10.0645 20 1 5.1871 0.1249 11.2985 21 1 7.2622 -0.7319 10.3825 22 8 3.3609 -0.8820 0.6413 23 1 3.0472 1.7333 -1.2488 24 1 5.5883 1.0145 -0.7320 25 1 7.2720 -0.3009 2.6189 26 1 4.6606 -0.1529 3.4670 27 1 5.0983 -1.8623 3.7013 28 1 7.0340 -1.1762 5.0909 29 1 6.5964 0.5331 4.8566 30 1 4.4031 0.1188 5.9374 31 1 4.8413 -1.5904 6.1714 32 1 3.4991 -0.5603 9.4423 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286943930.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:25 Heat of formation + Delta-G solvation = -31.273777 kcal Electronic energy + Delta-G solvation = -19204.149103 eV Core-core repulsion = 15873.067870 eV Total energy + Delta-G solvation = -3331.081233 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.26682 -37.54259 -37.15641 -36.17871 -36.10715 -33.87023 -33.31569 -30.98747 -30.93693 -26.48879 -24.44323 -23.12217 -22.73703 -20.69671 -20.05712 -19.66107 -18.29130 -17.59955 -16.83088 -16.56876 -15.91278 -15.07431 -14.71789 -14.66823 -14.46300 -14.27795 -13.92685 -13.89932 -13.64977 -13.01195 -12.79312 -12.46834 -12.36798 -12.31079 -12.13720 -11.85799 -11.65361 -10.94416 -10.82184 -10.75207 -10.61011 -10.02583 -9.63760 -9.54122 -9.40809 -9.16647 -8.39854 -6.04888 -4.08080 -0.11795 0.17724 1.44576 1.50806 2.41582 2.74329 2.77589 3.30594 3.35718 3.37314 3.38138 3.56344 4.15214 4.34230 4.42331 4.72991 4.84651 5.05292 5.17848 5.31195 5.55702 5.56336 5.77086 5.98903 6.07038 6.48776 6.66830 6.73278 6.84014 7.00041 7.58695 7.70741 7.93245 8.34327 8.98323 9.56493 11.06326 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.017471 B = 0.003907 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.227560 B = 7164.312526 C = 8297.336220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C 0.283 3.717 3 C 0.091 3.909 4 C -0.144 4.144 5 C -0.091 4.091 6 C -0.539 4.539 7 S 2.716 3.284 8 O -0.931 6.931 9 O -0.939 6.939 10 N -1.100 6.100 11 C 0.108 3.892 12 C -0.115 4.115 13 C 0.021 3.979 14 C -0.524 4.524 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 O -0.095 6.095 23 H 0.175 0.825 24 H 0.181 0.819 25 H 0.422 0.578 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.019 0.981 31 H 0.021 0.979 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.363 3.309 -19.644 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.033 5.033 2 C -0.033 4.033 3 C 0.034 3.966 4 C -0.167 4.167 5 C -0.112 4.112 6 C -0.669 4.669 7 S 2.796 3.204 8 O -0.920 6.920 9 O -0.929 6.929 10 N -0.864 5.864 11 C -0.017 4.017 12 C -0.154 4.154 13 C -0.017 4.017 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 O 0.014 5.986 23 H 0.193 0.807 24 H 0.198 0.802 25 H 0.258 0.742 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.540 2.250 -19.788 19.923 hybrid contribution 0.624 1.215 0.892 1.631 sum 1.164 3.466 -18.897 19.247 Atomic orbital electron populations 1.81374 1.10270 1.05407 1.06209 1.23430 0.89451 0.95344 0.95106 1.17170 0.85059 0.93772 1.00557 1.22122 0.91583 1.00773 1.02211 1.21938 0.99405 0.94028 0.95826 1.36630 0.98806 1.14879 1.16570 1.01949 0.72017 0.73718 0.72738 1.93642 1.81796 1.32747 1.83852 1.93657 1.48598 1.85428 1.65227 1.55510 1.29419 1.75300 1.26204 1.21736 0.91183 1.02452 0.86281 1.21860 1.00012 1.00740 0.92827 1.19085 0.93974 0.97743 0.90919 1.21160 0.96508 1.46597 0.91940 0.92611 1.25019 0.94863 0.95284 0.99216 1.69947 1.08331 1.48386 1.26656 0.86641 0.79418 0.78978 0.82839 1.20261 1.21297 1.20199 1.84311 1.14006 1.44440 1.55832 0.80713 0.80192 0.74198 0.91870 0.89963 0.92139 0.92427 0.96304 0.96076 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.35 -4.38 18.54 41.84 0.78 -3.60 16 2 C 0.28 3.02 15.89 -22.47 -0.36 2.66 16 3 C 0.09 0.90 7.08 -38.26 -0.27 0.63 16 4 C -0.14 -1.04 10.84 -39.35 -0.43 -1.47 16 5 C -0.09 -0.72 10.59 -39.87 -0.42 -1.14 16 6 C -0.54 -5.61 7.32 29.60 0.22 -5.40 16 7 S 2.72 30.82 5.89 -107.50 -0.63 30.19 16 8 O -0.93 -13.97 17.49 -57.25 -1.00 -14.97 16 9 O -0.94 -11.34 17.83 -57.17 -1.02 -12.36 16 10 N -1.10 -12.26 6.00 -10.61 -0.06 -12.32 16 11 C 0.11 1.57 6.22 -4.05 -0.03 1.54 16 12 C -0.12 -2.05 5.29 -26.74 -0.14 -2.20 16 13 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 14 C -0.52 -14.14 9.11 -34.44 -0.31 -14.46 16 15 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 18 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 O -0.10 -1.12 10.67 4.79 0.05 -1.07 16 23 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 24 H 0.18 0.90 8.06 -52.49 -0.42 0.47 16 25 H 0.42 3.78 8.65 -34.47 -0.30 3.48 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.08 1.24 7.75 -51.93 -0.40 0.84 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 312.60 15.07 4.71 4.71 Total: -1.00 -33.71 312.60 -6.64 -40.35 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: -3.20 Total: -3.53 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -1.98 Total: -17.96 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 1.45 Total: -41.40 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -1.97 Total: -28.40 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 30.82 SS G_CDS: -0.63 Total: 30.19 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.71 -6.64 -40.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286943930.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.078 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds