Wall clock time and date at job start Tue Mar 31 2020 05:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47137 * 2 1 4 4 H 1.09000 * 109.47165 * 303.37830 * 3 2 1 5 5 C 1.50704 * 109.47324 * 183.37802 * 3 2 1 6 6 H 1.07995 * 120.00308 * 239.99815 * 5 3 2 7 7 C 1.37882 * 119.99881 * 60.00137 * 5 3 2 8 8 N 1.31514 * 119.99992 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99849 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47565 * 59.99657 * 9 7 5 11 11 H 1.48504 * 109.47072 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47102 * 299.99496 * 9 7 5 13 13 N 1.46500 * 109.47397 * 63.37670 * 3 2 1 14 14 S 1.65599 * 120.00423 * 216.00757 * 13 3 2 15 15 O 1.42094 * 106.40024 * 178.67608 * 14 13 3 16 16 O 1.42102 * 106.39882 * 311.59894 * 14 13 3 17 17 C 1.76199 * 107.21610 * 65.13759 * 14 13 3 18 18 C 1.35043 * 125.61894 * 94.13609 * 17 14 13 19 19 C 1.40478 * 107.11464 * 179.97438 * 18 17 14 20 20 C 1.36547 * 106.70183 * 359.97438 * 19 18 17 21 21 C 1.43202 * 125.98238 * 180.02562 * 20 19 18 22 22 N 7.03280 * 56.62712 * 317.56804 * 2 1 3 23 23 O 1.34050 * 125.61587 * 273.82938 * 17 14 13 24 24 H 1.08998 * 109.46851 * 294.84476 * 1 2 3 25 25 H 1.09000 * 109.46942 * 174.84461 * 1 2 3 26 26 H 1.08999 * 109.47247 * 54.84393 * 1 2 3 27 27 H 1.08999 * 109.47592 * 120.00094 * 2 1 3 28 28 H 1.09006 * 109.47288 * 240.00102 * 2 1 3 29 29 H 0.96996 * 119.99912 * 180.02562 * 8 7 5 30 30 H 0.97008 * 119.99469 * 36.00350 * 13 3 2 31 31 H 1.08002 * 126.44274 * 359.95714 * 18 17 14 32 32 H 1.07992 * 126.64636 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6280 1.9735 -0.8582 5 6 3.5447 1.4434 -0.0837 6 1 4.1291 1.8953 0.7040 7 6 4.1752 0.8672 -1.1661 8 7 3.4636 0.3164 -2.1251 9 14 6.0403 0.8676 -1.2695 10 1 6.6012 0.1438 -0.1004 11 1 6.4668 0.1925 -2.5215 12 1 6.5358 2.2675 -1.2692 13 7 1.6192 2.1093 1.2347 14 16 1.1988 3.7108 1.2092 15 8 0.8148 4.0460 2.5355 16 8 2.2322 4.3857 0.5050 17 6 -0.2525 3.8532 0.2201 18 6 -1.5219 3.8462 0.6806 19 6 -2.3666 3.9832 -0.4335 20 6 -1.5583 4.0684 -1.5307 21 6 -1.9935 4.2177 -2.8868 22 7 -2.3387 4.3348 -3.9627 23 8 -0.2781 3.9922 -1.1130 24 1 -0.3633 0.4318 0.9325 25 1 -0.3633 -1.0235 -0.0923 26 1 -0.3634 0.5917 -0.8402 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.9072 -0.0893 -2.8864 30 1 1.5868 1.6125 2.0674 31 1 -1.8299 3.7526 1.7115 32 1 -3.4460 4.0157 -0.4239 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287923210.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:50 Heat of formation + Delta-G solvation = -23.970900 kcal Electronic energy + Delta-G solvation = -20526.045228 eV Core-core repulsion = 17195.280671 eV Total energy + Delta-G solvation = -3330.764557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.87716 -36.94684 -36.87456 -36.08095 -35.47986 -33.48401 -32.25242 -30.76264 -30.57378 -26.71611 -24.04659 -23.12863 -22.36947 -20.30915 -19.70055 -19.24052 -17.79381 -17.24147 -16.52226 -16.23204 -15.51887 -14.72127 -14.61775 -13.96607 -13.85519 -13.63649 -13.61350 -13.28942 -13.22408 -13.06285 -12.69737 -12.02988 -11.89404 -11.73433 -11.57307 -11.27944 -11.25890 -11.03207 -10.79753 -10.38381 -10.29690 -9.96519 -9.88892 -9.81985 -9.22486 -8.46631 -8.39758 -6.10517 -4.17520 0.41140 0.66493 1.80171 1.84443 2.74876 3.03074 3.32040 3.36121 3.40042 3.47403 3.92613 4.00141 4.40323 4.50561 4.92529 5.11854 5.19422 5.21236 5.40533 5.92090 5.99756 6.05240 6.18709 6.36913 6.47578 6.68691 6.84223 6.99391 6.99972 7.46093 7.56558 7.79615 7.98888 8.16863 8.84793 9.48928 10.94201 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.016323 B = 0.006688 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.933457 B = 4185.418450 C = 4794.239449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.277 3.723 4 H 0.046 0.954 5 C -0.523 4.523 6 H 0.066 0.934 7 C 0.065 3.935 8 N -0.892 5.892 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.274 1.274 13 N -1.085 6.085 14 S 2.704 3.296 15 O -0.959 6.959 16 O -0.920 6.920 17 C -0.522 4.522 18 C -0.105 4.105 19 C -0.144 4.144 20 C 0.079 3.921 21 C 0.289 3.711 22 N -0.365 5.365 23 O -0.088 6.088 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.107 0.893 29 H 0.264 0.736 30 H 0.411 0.589 31 H 0.178 0.822 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.811 3.126 5.931 12.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.063 0.937 5 C -0.562 4.562 6 H 0.084 0.916 7 C -0.138 4.138 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.849 5.849 14 S 2.782 3.218 15 O -0.949 6.949 16 O -0.910 6.910 17 C -0.651 4.651 18 C -0.125 4.125 19 C -0.167 4.167 20 C 0.022 3.978 21 C -0.027 4.027 22 N -0.044 5.044 23 O 0.022 5.978 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.125 0.875 29 H 0.074 0.926 30 H 0.245 0.755 31 H 0.195 0.805 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.665 4.032 4.077 12.109 hybrid contribution 0.290 -0.616 0.244 0.723 sum -10.376 3.416 4.322 11.747 Atomic orbital electron populations 1.21854 0.99077 0.99826 0.99934 1.21901 0.91837 0.99275 1.03682 1.18703 0.94887 0.90083 0.78982 0.93669 1.21426 0.90731 1.37391 1.06681 0.91590 1.24896 0.98733 0.94863 0.95276 1.69819 1.35428 1.37939 1.09837 0.86542 0.85046 0.78533 0.77270 1.20169 1.21294 1.19921 1.55583 1.80147 1.29989 1.19191 1.02329 0.72719 0.74164 0.72595 1.93596 1.84128 1.83609 1.33534 1.93657 1.50685 1.72467 1.74199 1.37021 1.21678 1.16757 0.89626 1.21861 0.90392 0.98840 1.01454 1.22033 1.01206 1.03704 0.89792 1.17174 0.84050 1.08527 0.88026 1.23471 0.94845 0.94409 0.89958 1.81323 1.06683 1.07764 1.08587 1.84375 1.25471 1.67410 1.20577 0.94316 0.94275 0.93923 0.93674 0.87466 0.92562 0.75485 0.80504 0.81093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.72 37.15 0.36 -2.14 16 2 C -0.13 -2.60 5.37 -26.73 -0.14 -2.74 16 3 C 0.28 6.12 2.17 -69.08 -0.15 5.97 16 4 H 0.05 1.09 7.86 -51.93 -0.41 0.68 16 5 C -0.52 -13.40 8.84 -34.44 -0.30 -13.70 16 6 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -23.86 11.30 55.43 0.63 -23.23 16 9 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 N -1.09 -19.33 4.92 -5.88 -0.03 -19.36 16 14 S 2.70 46.88 5.80 -107.50 -0.62 46.26 16 15 O -0.96 -16.28 17.79 -57.17 -1.02 -17.29 16 16 O -0.92 -19.95 17.77 -57.18 -1.02 -20.97 16 17 C -0.52 -7.99 7.21 29.60 0.21 -7.78 16 18 C -0.10 -1.23 10.55 -39.87 -0.42 -1.65 16 19 C -0.14 -1.52 10.84 -39.35 -0.43 -1.95 16 20 C 0.08 1.07 7.08 -38.27 -0.27 0.80 16 21 C 0.29 3.98 15.88 -22.47 -0.36 3.63 16 22 N -0.37 -5.46 18.54 41.84 0.78 -4.68 16 23 O -0.09 -1.47 10.67 4.79 0.05 -1.42 16 24 H 0.04 0.55 7.85 -51.93 -0.41 0.15 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.11 2.52 5.99 -51.93 -0.31 2.21 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.41 6.13 8.85 -34.47 -0.31 5.82 16 31 H 0.18 1.55 8.06 -52.49 -0.42 1.12 16 32 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 307.83 15.07 4.64 4.64 Total: -1.00 -30.62 307.83 -6.30 -36.92 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -3.09 Total: 1.33 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -1.59 Total: -17.97 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 1.37 Total: -47.27 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -1.98 Total: -39.68 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 46.88 SS G_CDS: -0.62 Total: 46.26 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.62 -6.30 -36.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287923210.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.947 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds