Wall clock time and date at job start Tue Mar 31 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46956 * 2 1 4 4 H 1.09000 * 109.46977 * 178.45818 * 3 2 1 5 5 C 1.50699 * 109.47153 * 298.45691 * 3 2 1 6 6 H 1.08003 * 119.99903 * 120.00051 * 5 3 2 7 7 C 1.37878 * 120.00263 * 300.00081 * 5 3 2 8 8 N 1.31516 * 119.99719 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00060 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46882 * 59.99967 * 9 7 5 11 11 H 1.48498 * 109.46899 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46953 * 300.00171 * 9 7 5 13 13 N 1.46504 * 109.47107 * 58.46052 * 3 2 1 14 14 S 1.65592 * 120.00258 * 96.20086 * 13 3 2 15 15 O 1.42093 * 106.40286 * 178.26186 * 14 13 3 16 16 O 1.42102 * 106.40336 * 311.18275 * 14 13 3 17 17 C 1.76205 * 107.21926 * 64.71930 * 14 13 3 18 18 C 1.35047 * 125.61550 * 89.99931 * 17 14 13 19 19 C 1.40468 * 107.11100 * 179.97438 * 18 17 14 20 20 C 1.36544 * 106.70730 * 0.02562 * 19 18 17 21 21 C 1.43199 * 125.98898 * 180.02562 * 20 19 18 22 22 N 7.67637 * 151.50875 * 9.13383 * 2 1 3 23 23 O 1.34048 * 125.61802 * 269.69493 * 17 14 13 24 24 H 1.08992 * 109.47245 * 55.75021 * 1 2 3 25 25 H 1.08995 * 109.47090 * 295.74229 * 1 2 3 26 26 H 1.09004 * 109.47119 * 175.74862 * 1 2 3 27 27 H 1.09004 * 109.47346 * 119.99987 * 2 1 3 28 28 H 1.08999 * 109.46873 * 240.00313 * 2 1 3 29 29 H 0.97003 * 119.99679 * 180.02562 * 8 7 5 30 30 H 0.97000 * 119.99442 * 276.20416 * 13 3 2 31 31 H 1.08007 * 126.43990 * 359.96137 * 18 17 14 32 32 H 1.08004 * 126.64806 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4426 0.0277 5 6 1.5691 2.1418 -1.2491 6 1 0.9459 3.0207 -1.1737 7 6 1.9338 1.6596 -2.4883 8 7 2.6922 0.5891 -2.5801 9 14 1.3495 2.5260 -4.0366 10 1 1.8439 3.9263 -4.0368 11 1 1.8746 1.8149 -5.2298 12 1 -0.1351 2.5252 -4.0740 13 7 1.5215 2.1438 1.1772 14 16 2.4482 2.2638 2.5443 15 8 1.6919 3.0243 3.4763 16 8 2.9305 0.9555 2.8183 17 6 3.8582 3.2381 2.1348 18 6 3.9434 4.5817 2.2410 19 6 5.2304 4.9491 1.8147 20 6 5.8724 3.7958 1.4652 21 6 7.2130 3.6952 0.9722 22 7 8.2767 3.6154 0.5813 23 8 5.0248 2.7672 1.6720 24 1 -0.3633 0.5783 -0.8494 25 1 -0.3633 0.4463 0.9256 26 1 -0.3633 -1.0249 -0.0762 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.9491 0.2500 -3.4519 30 1 0.6354 2.5377 1.1558 31 1 3.1678 5.2482 2.5883 32 1 5.6340 5.9500 1.7717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287923217.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:52 Heat of formation + Delta-G solvation = -25.252244 kcal Electronic energy + Delta-G solvation = -20422.805263 eV Core-core repulsion = 17091.985143 eV Total energy + Delta-G solvation = -3330.820120 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.82928 -37.04570 -36.84692 -36.12172 -35.60019 -33.44228 -32.32367 -30.57357 -30.38965 -26.47591 -24.02201 -23.63541 -22.32896 -20.19524 -19.66194 -19.11199 -17.78444 -17.30660 -16.67826 -16.07886 -15.36592 -14.80883 -14.61058 -13.95101 -13.76786 -13.59558 -13.57238 -13.26827 -13.23947 -12.87892 -12.65738 -12.32338 -11.97404 -11.82545 -11.69520 -11.37871 -11.07930 -10.95780 -10.66108 -10.51737 -10.32359 -10.10114 -9.74507 -9.28581 -9.16622 -8.69501 -8.38296 -6.19388 -4.28253 0.41695 0.66244 1.84984 1.88492 2.77422 3.07659 3.20616 3.26731 3.27327 3.39790 3.91245 3.99120 4.28246 4.55689 4.87433 5.12098 5.15041 5.25707 5.43788 5.97027 6.13505 6.34744 6.47778 6.50745 6.56041 6.97485 7.03477 7.20801 7.35296 7.44312 7.58979 7.66661 7.96566 8.17268 8.73233 9.37695 10.85516 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.013484 B = 0.007575 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.090423 B = 3695.295438 C = 4917.532887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.135 4.135 3 C 0.276 3.724 4 H 0.044 0.956 5 C -0.526 4.526 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.275 1.275 13 N -1.083 6.083 14 S 2.706 3.294 15 O -0.956 6.956 16 O -0.937 6.937 17 C -0.521 4.521 18 C -0.100 4.100 19 C -0.143 4.143 20 C 0.081 3.919 21 C 0.291 3.709 22 N -0.367 5.367 23 O -0.091 6.091 24 H 0.062 0.938 25 H 0.031 0.969 26 H 0.027 0.973 27 H 0.034 0.966 28 H 0.101 0.899 29 H 0.266 0.734 30 H 0.414 0.586 31 H 0.177 0.823 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.304 6.936 7.621 10.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.175 4.175 3 C 0.172 3.828 4 H 0.062 0.938 5 C -0.565 4.565 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.847 5.847 14 S 2.785 3.215 15 O -0.946 6.946 16 O -0.927 6.927 17 C -0.651 4.651 18 C -0.121 4.121 19 C -0.166 4.166 20 C 0.024 3.976 21 C -0.025 4.025 22 N -0.045 5.045 23 O 0.019 5.981 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.250 0.750 31 H 0.195 0.805 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.180 5.938 7.633 9.914 hybrid contribution -0.612 1.291 -1.316 1.942 sum 1.567 7.230 6.317 9.728 Atomic orbital electron populations 1.21575 0.97643 0.98965 1.00677 1.21964 0.95008 0.98565 1.01995 1.18699 0.94034 0.88945 0.81148 0.93784 1.21157 1.33080 1.12524 0.89757 0.91676 1.24886 0.94799 0.94896 0.99022 1.69849 1.35217 1.22006 1.24933 0.86574 0.79161 0.79602 0.82186 1.20255 1.21212 1.20057 1.55589 1.27439 1.69461 1.32195 1.02182 0.72308 0.73732 0.73308 1.93601 1.67660 1.73352 1.60002 1.93616 1.80921 1.34857 1.83285 1.36797 1.04091 1.09657 1.14536 1.21842 0.98098 0.93522 0.98617 1.22032 0.94064 0.98545 1.01988 1.17134 0.86968 0.87608 1.05859 1.23458 0.90175 0.95098 0.93801 1.81316 1.10604 1.04800 1.07785 1.84325 1.19092 1.32675 1.62051 0.91860 0.95011 0.95418 0.94762 0.88044 0.92400 0.75035 0.80512 0.81065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.51 37.16 0.35 -2.22 16 2 C -0.14 -3.01 5.69 -26.73 -0.15 -3.16 16 3 C 0.28 6.08 2.47 -69.08 -0.17 5.91 16 4 H 0.04 1.06 7.84 -51.93 -0.41 0.65 16 5 C -0.53 -12.47 7.51 -34.44 -0.26 -12.73 16 6 H 0.07 1.48 7.81 -52.48 -0.41 1.07 16 7 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 8 N -0.88 -23.07 11.31 55.43 0.63 -22.44 16 9 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 N -1.08 -19.29 4.75 -5.88 -0.03 -19.31 16 14 S 2.71 45.46 5.79 -107.50 -0.62 44.84 16 15 O -0.96 -16.00 17.83 -57.17 -1.02 -17.02 16 16 O -0.94 -18.63 17.43 -57.26 -1.00 -19.63 16 17 C -0.52 -8.21 7.17 29.60 0.21 -7.99 16 18 C -0.10 -1.26 10.59 -39.88 -0.42 -1.68 16 19 C -0.14 -1.64 10.84 -39.35 -0.43 -2.07 16 20 C 0.08 1.15 7.08 -38.27 -0.27 0.88 16 21 C 0.29 4.15 15.89 -22.47 -0.36 3.80 16 22 N -0.37 -5.64 18.54 41.84 0.78 -4.86 16 23 O -0.09 -1.55 10.67 4.80 0.05 -1.49 16 24 H 0.06 1.30 7.12 -51.93 -0.37 0.93 16 25 H 0.03 0.55 7.59 -51.93 -0.39 0.16 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.03 0.74 7.79 -51.93 -0.40 0.34 16 28 H 0.10 2.50 6.03 -51.93 -0.31 2.19 16 29 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.41 6.46 8.68 -34.47 -0.30 6.16 16 31 H 0.18 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.17 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 304.65 15.07 4.59 4.59 Total: -1.00 -29.22 304.65 -6.23 -35.45 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -3.00 Total: 3.01 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -1.59 Total: -17.68 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 1.37 Total: -46.61 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -1.97 Total: -38.14 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 16 Polarization: 45.46 SS G_CDS: -0.62 Total: 44.84 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.22 -6.23 -35.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287923217.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.197 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds