Wall clock time and date at job start Tue Mar 31 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46956 * 2 1 4 4 H 1.09000 * 109.46977 * 178.45818 * 3 2 1 5 5 C 1.50699 * 109.47153 * 298.45691 * 3 2 1 6 6 H 1.08003 * 119.99903 * 120.00051 * 5 3 2 7 7 C 1.37878 * 120.00263 * 300.00081 * 5 3 2 8 8 N 1.31516 * 119.99719 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00060 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46882 * 59.99967 * 9 7 5 11 11 H 1.48498 * 109.46899 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46953 * 300.00171 * 9 7 5 13 13 N 1.46504 * 109.47107 * 58.46052 * 3 2 1 14 14 S 1.65592 * 120.00258 * 96.20086 * 13 3 2 15 15 O 1.42093 * 106.40286 * 178.26186 * 14 13 3 16 16 O 1.42102 * 106.40336 * 311.18275 * 14 13 3 17 17 C 1.76205 * 107.21926 * 64.71930 * 14 13 3 18 18 C 1.35047 * 125.61550 * 89.99931 * 17 14 13 19 19 C 1.40468 * 107.11100 * 179.97438 * 18 17 14 20 20 C 1.36544 * 106.70730 * 0.02562 * 19 18 17 21 21 C 1.43199 * 125.98898 * 180.02562 * 20 19 18 22 22 N 7.67637 * 151.50875 * 9.13383 * 2 1 3 23 23 O 1.34048 * 125.61802 * 269.69493 * 17 14 13 24 24 H 1.08992 * 109.47245 * 55.75021 * 1 2 3 25 25 H 1.08995 * 109.47090 * 295.74229 * 1 2 3 26 26 H 1.09004 * 109.47119 * 175.74862 * 1 2 3 27 27 H 1.09004 * 109.47346 * 119.99987 * 2 1 3 28 28 H 1.08999 * 109.46873 * 240.00313 * 2 1 3 29 29 H 0.97003 * 119.99679 * 180.02562 * 8 7 5 30 30 H 0.97000 * 119.99442 * 276.20416 * 13 3 2 31 31 H 1.08007 * 126.43990 * 359.96137 * 18 17 14 32 32 H 1.08004 * 126.64806 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4426 0.0277 5 6 1.5691 2.1418 -1.2491 6 1 0.9459 3.0207 -1.1737 7 6 1.9338 1.6596 -2.4883 8 7 2.6922 0.5891 -2.5801 9 14 1.3495 2.5260 -4.0366 10 1 1.8439 3.9263 -4.0368 11 1 1.8746 1.8149 -5.2298 12 1 -0.1351 2.5252 -4.0740 13 7 1.5215 2.1438 1.1772 14 16 2.4482 2.2638 2.5443 15 8 1.6919 3.0243 3.4763 16 8 2.9305 0.9555 2.8183 17 6 3.8582 3.2381 2.1348 18 6 3.9434 4.5817 2.2410 19 6 5.2304 4.9491 1.8147 20 6 5.8724 3.7958 1.4652 21 6 7.2130 3.6952 0.9722 22 7 8.2767 3.6154 0.5813 23 8 5.0248 2.7672 1.6720 24 1 -0.3633 0.5783 -0.8494 25 1 -0.3633 0.4463 0.9256 26 1 -0.3633 -1.0249 -0.0762 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.9491 0.2500 -3.4519 30 1 0.6354 2.5377 1.1558 31 1 3.1678 5.2482 2.5883 32 1 5.6340 5.9500 1.7717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287923217.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:52 Heat of formation + Delta-G solvation = -46.057951 kcal Electronic energy + Delta-G solvation = -20423.707466 eV Core-core repulsion = 17091.985143 eV Total energy + Delta-G solvation = -3331.722323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.94086 -38.47248 -38.01464 -37.76950 -37.03211 -34.51829 -34.11159 -32.06655 -31.63764 -28.26299 -25.39756 -25.15611 -23.38525 -21.87902 -20.76309 -20.44817 -19.23915 -18.68167 -18.14284 -17.44156 -17.04993 -16.39470 -15.76005 -15.39840 -15.07992 -14.82927 -14.77032 -14.74423 -14.52474 -14.21728 -14.04675 -13.76696 -13.48840 -13.30332 -13.19935 -12.78022 -12.71109 -12.59722 -12.38232 -12.18126 -11.81913 -11.47636 -11.34941 -11.02065 -10.52673 -10.31379 -10.05462 -8.07452 -6.20704 -0.84769 -0.53054 0.72238 0.85874 1.48982 1.50508 1.56477 1.67860 1.97027 2.03449 2.48340 2.60736 2.83039 3.23023 3.59663 3.61484 4.10871 4.24157 4.48184 4.59066 4.72229 4.83593 4.89524 5.05938 5.29393 5.43621 5.51382 5.59333 5.74705 5.77092 5.90901 6.12352 6.14639 6.45562 6.89333 7.48079 8.96819 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.013484 B = 0.007575 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.090423 B = 3695.295438 C = 4917.532887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.138 4.138 3 C 0.282 3.718 4 H 0.018 0.982 5 C -0.524 4.524 6 H 0.076 0.924 7 C 0.021 3.979 8 N -0.915 5.915 9 Si 0.952 3.048 10 H -0.272 1.272 11 H -0.295 1.295 12 H -0.267 1.267 13 N -1.082 6.082 14 S 2.731 3.269 15 O -0.952 6.952 16 O -0.975 6.975 17 C -0.555 4.555 18 C -0.081 4.081 19 C -0.115 4.115 20 C 0.061 3.939 21 C 0.305 3.695 22 N -0.391 5.391 23 O -0.126 6.126 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.262 0.738 30 H 0.425 0.575 31 H 0.213 0.787 32 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.682 9.451 8.152 12.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.178 4.178 3 C 0.177 3.823 4 H 0.036 0.964 5 C -0.564 4.564 6 H 0.094 0.906 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.779 3.221 10 H -0.197 1.197 11 H -0.221 1.221 12 H -0.192 1.192 13 N -0.846 5.846 14 S 2.813 3.187 15 O -0.942 6.942 16 O -0.965 6.965 17 C -0.687 4.687 18 C -0.101 4.101 19 C -0.137 4.137 20 C 0.005 3.995 21 C -0.011 4.011 22 N -0.069 5.069 23 O -0.019 6.019 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.262 0.738 31 H 0.230 0.770 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.140 8.457 8.183 11.823 hybrid contribution -0.255 0.571 -1.402 1.535 sum 0.884 9.028 6.782 11.326 Atomic orbital electron populations 1.21500 0.95481 0.99905 1.01324 1.21908 0.96975 0.98510 1.00380 1.18339 0.92646 0.89164 0.82188 0.96394 1.21484 1.32244 1.12457 0.90205 0.90573 1.25590 0.95141 0.95470 1.01749 1.70002 1.36775 1.23521 1.25053 0.85697 0.78975 0.78601 0.78876 1.19698 1.22078 1.19211 1.55326 1.28526 1.69659 1.31084 1.01110 0.72017 0.72948 0.72585 1.93601 1.67954 1.73094 1.59542 1.93568 1.81562 1.37586 1.83822 1.36383 1.03902 1.10981 1.17390 1.22428 0.99181 0.92389 0.96133 1.22608 0.92826 0.99472 0.98785 1.17478 0.86844 0.88202 1.07010 1.23477 0.90076 0.94401 0.93109 1.81325 1.11335 1.05496 1.08758 1.84276 1.19909 1.34266 1.63409 0.92871 0.92815 0.94158 0.95165 0.90906 0.92896 0.73774 0.76991 0.76484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 9.51 71.98 0.68 -4.10 16 2 C -0.14 -6.22 5.69 30.59 0.17 -6.05 16 3 C 0.28 12.52 2.47 44.24 0.11 12.63 16 4 H 0.02 0.90 7.84 -2.39 -0.02 0.89 16 5 C -0.52 -24.58 7.51 25.60 0.19 -24.39 16 6 H 0.08 3.33 7.81 -2.91 -0.02 3.30 16 7 C 0.02 1.03 5.30 84.65 0.45 1.48 16 8 N -0.91 -48.90 11.31 21.45 0.24 -48.66 16 9 Si 0.95 39.71 29.54 68.60 2.03 41.73 16 10 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 13 N -1.08 -37.61 4.75 -172.52 -0.82 -38.42 16 14 S 2.73 89.75 5.79 -56.49 -0.33 89.42 16 15 O -0.95 -29.89 17.83 -128.00 -2.28 -32.17 16 16 O -0.98 -39.42 17.43 -127.91 -2.23 -41.65 16 17 C -0.55 -16.79 7.17 67.09 0.48 -16.31 16 18 C -0.08 -1.75 10.59 22.08 0.23 -1.52 16 19 C -0.11 -2.20 10.84 22.42 0.24 -1.96 16 20 C 0.06 1.64 7.08 23.12 0.16 1.80 16 21 C 0.31 8.50 15.89 88.33 1.40 9.90 16 22 N -0.39 -11.86 18.54 19.00 0.35 -11.50 16 23 O -0.13 -4.28 10.67 -5.76 -0.06 -4.34 16 24 H 0.05 2.13 7.12 -2.39 -0.02 2.11 16 25 H 0.05 1.79 7.59 -2.39 -0.02 1.77 16 26 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.03 1.34 7.79 -2.38 -0.02 1.32 16 28 H 0.07 3.72 6.03 -2.39 -0.01 3.71 16 29 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 30 H 0.43 12.51 8.68 -96.75 -0.84 11.67 16 31 H 0.21 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.22 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -63.71 304.65 1.37 -62.34 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.33 Total: 11.76 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 4.13 Total: -28.50 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -0.22 Total: -98.59 kcal Atomic # 8 Polarization: -73.59 SS G_CDS: -4.57 Total: -78.16 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.73 kcal Atomic # 16 Polarization: 89.75 SS G_CDS: -0.33 Total: 89.42 kcal Total: -63.71 1.37 -62.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287923217.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.285 kcal (2) G-P(sol) polarization free energy of solvation -63.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds