Wall clock time and date at job start Tue Mar 31 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47006 * 2 1 4 4 N 1.46504 * 109.47146 * 180.02562 * 3 2 1 5 5 C 1.36935 * 119.99681 * 293.75323 * 4 3 2 6 6 H 1.08002 * 119.99566 * 149.38628 * 5 4 3 7 7 C 1.38815 * 120.00586 * 329.39194 * 5 4 3 8 8 N 1.31615 * 119.99584 * 337.58458 * 7 5 4 9 9 Si 1.86796 * 120.00041 * 157.57711 * 7 5 4 10 10 H 1.48502 * 109.46962 * 60.00233 * 9 7 5 11 11 H 1.48500 * 109.47089 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47292 * 300.00208 * 9 7 5 13 13 S 1.65598 * 119.99978 * 113.75666 * 4 3 2 14 14 O 1.42094 * 106.40312 * 336.46163 * 13 4 3 15 15 O 1.42103 * 106.39792 * 203.54050 * 13 4 3 16 16 C 1.76203 * 107.21873 * 90.00015 * 13 4 3 17 17 C 1.35048 * 125.61524 * 89.99900 * 16 13 4 18 18 C 1.40473 * 107.11401 * 180.02562 * 17 16 13 19 19 C 1.36550 * 106.69775 * 0.02562 * 18 17 16 20 20 C 1.43208 * 125.98396 * 179.97438 * 19 18 17 21 21 N 8.51672 * 101.44621 * 349.81731 * 2 1 3 22 22 O 1.34040 * 125.61710 * 270.02505 * 16 13 4 23 23 H 1.09005 * 109.47360 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47057 * 299.99689 * 1 2 3 25 25 H 1.08997 * 109.47195 * 59.99919 * 1 2 3 26 26 H 1.09005 * 109.46856 * 240.00642 * 2 1 3 27 27 H 1.08997 * 109.47195 * 120.00081 * 2 1 3 28 28 H 1.09005 * 109.47200 * 59.99944 * 3 2 1 29 29 H 1.09002 * 109.47653 * 300.00167 * 3 2 1 30 30 H 0.96999 * 119.99785 * 179.97438 * 8 7 5 31 31 H 1.08002 * 126.44499 * 0.02562 * 17 16 13 32 32 H 1.07999 * 126.65196 * 179.73700 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 0.9647 1.0845 6 1 5.1572 0.5025 0.9518 7 6 3.6417 1.0742 2.3550 8 7 2.7242 1.9856 2.5993 9 14 4.2057 -0.0722 3.7177 10 1 5.6635 0.1027 3.9400 11 1 3.4728 0.2480 4.9689 12 1 3.9296 -1.4782 3.3278 13 16 4.3324 2.0205 -1.3135 14 8 3.4503 1.9141 -2.4224 15 8 5.6154 1.4104 -1.2795 16 6 4.5933 3.7428 -1.0488 17 6 5.6607 4.2904 -0.4286 18 6 5.4716 5.6823 -0.4317 19 6 4.2825 5.9152 -1.0615 20 6 3.6893 7.1982 -1.2914 21 7 3.2202 8.2159 -1.4757 22 8 3.7648 4.7254 -1.4293 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 2.3407 2.0619 3.4870 31 1 6.5017 3.7582 -0.0091 32 1 6.1353 6.4241 -0.0128 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288571887.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:31 Heat of formation + Delta-G solvation = -23.186392 kcal Electronic energy + Delta-G solvation = -20552.462156 eV Core-core repulsion = 17221.731618 eV Total energy + Delta-G solvation = -3330.730538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.18889 -36.64193 -36.58614 -35.88584 -34.47599 -32.84961 -32.82222 -31.37387 -29.86768 -26.26194 -24.07291 -23.25597 -21.67754 -20.70529 -19.10552 -18.66818 -17.64509 -16.90927 -16.37152 -15.81634 -15.08278 -14.61143 -14.24342 -14.03071 -13.66566 -13.38661 -13.28205 -13.17889 -12.92165 -12.67089 -12.26460 -12.06024 -12.04645 -11.71753 -11.22519 -11.11686 -10.79868 -10.78422 -10.72228 -10.58116 -10.42852 -10.21211 -9.81183 -9.75198 -9.62436 -8.56863 -8.19173 -6.88252 -4.39968 1.05084 1.46064 2.25219 2.50090 2.94447 2.99144 3.04106 3.17374 3.39043 3.72540 4.18921 4.41502 4.52919 4.94925 5.11236 5.60553 5.71459 5.72545 5.77290 5.88769 5.94757 6.08672 6.18222 6.47296 6.51596 6.58305 6.66896 6.75365 6.90160 7.14724 7.17614 7.31335 7.33766 7.97284 8.29196 8.80005 9.96231 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.016286 B = 0.006725 C = 0.006261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.868222 B = 4162.388930 C = 4470.752888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.109 3.891 4 N -0.770 5.770 5 C -0.208 4.208 6 H 0.123 0.877 7 C 0.036 3.964 8 N -0.794 5.794 9 Si 0.931 3.069 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.262 1.262 13 S 2.468 3.532 14 O -0.989 6.989 15 O -0.972 6.972 16 C -0.471 4.471 17 C -0.141 4.141 18 C -0.134 4.134 19 C 0.025 3.975 20 C 0.302 3.698 21 N -0.395 5.395 22 O -0.107 6.107 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.284 0.716 31 H 0.167 0.833 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 -0.714 2.245 2.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.017 4.017 4 N -0.591 5.591 5 C -0.365 4.365 6 H 0.140 0.860 7 C -0.182 4.182 8 N -0.432 5.432 9 Si 0.755 3.245 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.187 1.187 13 S 2.564 3.436 14 O -0.978 6.978 15 O -0.961 6.961 16 C -0.592 4.592 17 C -0.162 4.162 18 C -0.158 4.158 19 C -0.030 4.030 20 C -0.013 4.013 21 N -0.074 5.074 22 O 0.002 5.998 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.185 0.815 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.384 0.754 0.781 1.151 hybrid contribution 0.678 0.134 1.177 1.365 sum 0.294 0.888 1.958 2.170 Atomic orbital electron populations 1.21697 0.96477 1.00767 1.01508 1.21655 0.94370 0.97805 1.02237 1.21691 0.78903 0.97217 1.03865 1.54701 1.12769 1.56412 1.35217 1.20274 1.06335 1.24821 0.85048 0.85974 1.26050 0.96455 0.96482 0.99231 1.69905 1.22757 1.27026 1.23474 0.85877 0.79803 0.80380 0.78456 1.18664 1.20234 1.18706 1.16214 0.74343 0.73463 0.79551 1.93328 1.64556 1.85609 1.54314 1.93356 1.42256 1.72692 1.87817 1.39342 0.96032 1.16375 1.07472 1.21709 0.99897 0.93094 1.01480 1.21968 0.95677 0.97174 1.00945 1.17103 0.95327 0.82187 1.08415 1.23625 0.93222 0.90963 0.93501 1.81246 1.06350 1.11065 1.08758 1.84307 1.42927 1.11784 1.60751 0.93346 0.92805 0.93093 0.92667 0.91213 0.87604 0.91603 0.90495 0.81530 0.82209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.12 -2.17 5.98 -26.73 -0.16 -2.33 16 3 C 0.11 2.22 5.12 -4.04 -0.02 2.20 16 4 N -0.77 -16.83 2.98 -59.91 -0.18 -17.01 16 5 C -0.21 -4.48 8.67 -15.06 -0.13 -4.61 16 6 H 0.12 2.60 7.34 -52.49 -0.39 2.21 16 7 C 0.04 0.74 4.63 -17.43 -0.08 0.66 16 8 N -0.79 -16.73 11.06 55.49 0.61 -16.12 16 9 Si 0.93 15.96 29.61 -169.99 -5.03 10.93 16 10 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 11 H -0.28 -4.73 7.11 56.52 0.40 -4.33 16 12 H -0.26 -4.48 7.11 56.52 0.40 -4.08 16 13 S 2.47 55.99 5.78 -107.50 -0.62 55.37 16 14 O -0.99 -24.41 16.66 -57.25 -0.95 -25.36 16 15 O -0.97 -23.41 16.68 -57.17 -0.95 -24.36 16 16 C -0.47 -9.91 7.35 29.60 0.22 -9.69 16 17 C -0.14 -2.61 10.59 -39.87 -0.42 -3.03 16 18 C -0.13 -2.16 10.84 -39.35 -0.43 -2.59 16 19 C 0.02 0.44 7.08 -38.26 -0.27 0.17 16 20 C 0.30 5.06 15.88 -22.48 -0.36 4.70 16 21 N -0.40 -6.79 18.53 41.82 0.78 -6.01 16 22 O -0.11 -2.22 10.67 4.83 0.05 -2.17 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 1.27 7.41 -51.93 -0.39 0.89 16 28 H 0.11 2.22 5.53 -51.93 -0.29 1.94 16 29 H 0.07 1.34 7.03 -51.93 -0.37 0.97 16 30 H 0.28 5.56 8.31 -40.82 -0.34 5.22 16 31 H 0.17 2.78 8.06 -52.49 -0.42 2.35 16 32 H 0.16 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 303.65 15.07 4.58 4.58 Total: -1.00 -26.38 303.65 -6.10 -32.48 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -3.09 Total: 4.03 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -1.28 Total: -16.35 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 1.21 Total: -39.14 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -1.86 Total: -51.89 kcal Atomic # 14 Polarization: 15.96 SS G_CDS: -5.03 Total: 10.93 kcal Atomic # 16 Polarization: 55.99 SS G_CDS: -0.62 Total: 55.37 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.38 -6.10 -32.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288571887.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.292 kcal (2) G-P(sol) polarization free energy of solvation -26.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds