Wall clock time and date at job start Tue Mar 31 2020 05:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00317 * 2 1 4 4 H 1.48500 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47101 * 300.00243 * 3 2 1 6 6 H 1.48509 * 109.47195 * 59.99853 * 3 2 1 7 7 C 1.37876 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00119 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47266 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47262 * 180.02562 * 10 9 7 12 12 N 1.30928 * 126.39440 * 89.99887 * 11 10 9 13 13 C 1.35413 * 105.57210 * 179.97438 * 12 11 10 14 14 C 1.47682 * 126.44530 * 180.26000 * 13 12 11 15 15 C 1.34861 * 125.25334 * 179.71606 * 14 13 12 16 16 C 1.37813 * 114.73495 * 180.02562 * 15 14 13 17 17 C 1.33875 * 115.03945 * 0.02562 * 16 15 14 18 18 Cl 1.73601 * 125.13415 * 180.02562 * 17 16 15 19 19 S 1.75855 * 109.73018 * 359.73426 * 17 16 15 20 20 N 1.31064 * 107.09695 * 0.02562 * 13 12 11 21 21 O 1.21284 * 110.03843 * 359.97438 * 20 13 12 22 22 H 0.97000 * 119.99828 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46466 * 60.00159 * 9 7 2 24 24 H 1.08999 * 109.46955 * 299.99992 * 9 7 2 25 25 H 1.08999 * 109.46925 * 60.00219 * 10 9 7 26 26 H 1.09007 * 109.47383 * 300.00541 * 10 9 7 27 27 H 1.07993 * 122.63320 * 0.02562 * 15 14 13 28 28 H 1.08004 * 122.47872 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 6 1.4915 -4.9672 0.0020 12 7 1.1026 -5.6401 -1.0516 13 6 0.4705 -6.7364 -0.5698 14 6 -0.1462 -7.8152 -1.3679 15 6 -0.7660 -8.9008 -0.8620 16 6 -1.2640 -9.7728 -1.8059 17 6 -1.0564 -9.4101 -3.0778 18 17 -1.5710 -10.3102 -4.4701 19 16 -0.1909 -7.8799 -3.1250 20 7 0.5134 -6.6624 0.7380 21 8 1.0955 -5.6542 1.0782 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5574 -0.8880 24 1 0.6246 -2.5563 0.8920 25 1 2.8724 -3.6040 0.8909 26 1 2.8712 -3.6048 -0.8890 27 1 -0.8644 -9.0734 0.1995 28 1 -1.7832 -10.6815 -1.5393 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291063930.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:17 Heat of formation + Delta-G solvation = 82.983968 kcal Electronic energy + Delta-G solvation = -16376.960590 eV Core-core repulsion = 13355.710015 eV Total energy + Delta-G solvation = -3021.250576 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 284.013 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.23879 -38.34833 -36.95935 -35.67477 -34.50413 -32.65862 -30.57610 -29.30743 -25.93528 -25.18854 -23.49823 -22.50350 -21.12822 -19.27992 -18.48587 -17.79689 -16.75683 -16.38016 -16.02792 -14.58505 -14.47501 -14.19366 -14.13386 -13.62646 -13.27360 -12.89973 -12.47672 -12.40508 -12.20897 -11.66601 -11.53555 -11.26566 -11.05116 -10.99850 -10.84312 -10.73895 -10.23199 -10.19810 -9.52192 -9.31609 -8.84582 -8.63704 -8.49170 -6.13118 -4.18148 0.15611 0.72131 1.48948 1.50519 1.89040 2.09058 2.82738 3.15522 3.25936 3.33978 3.37114 3.55383 4.28358 4.37945 4.87701 5.01130 5.23778 5.26378 5.56394 5.64314 5.84921 5.88407 5.99672 6.14396 6.23208 6.54072 7.43794 7.49993 7.82070 8.16725 8.35088 8.87271 9.47226 10.98106 Molecular weight = 284.01amu Principal moments of inertia in cm(-1) A = 0.032061 B = 0.003114 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.118402 B = 8989.573605 C = 9520.775823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.030 4.030 11 C 0.226 3.774 12 N -0.490 5.490 13 C 0.224 3.776 14 C -0.111 4.111 15 C -0.094 4.094 16 C -0.119 4.119 17 C -0.159 4.159 18 Cl -0.011 7.011 19 S 0.247 5.753 20 N -0.376 5.376 21 O 0.079 5.921 22 H 0.263 0.737 23 H 0.027 0.973 24 H 0.025 0.975 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.155 0.845 28 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.998 -19.075 -4.772 19.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.081 0.919 9 C -0.012 4.012 10 C -0.069 4.069 11 C 0.007 3.993 12 N -0.223 5.223 13 C -0.046 4.046 14 C -0.230 4.230 15 C -0.128 4.128 16 C -0.152 4.152 17 C -0.304 4.304 18 Cl 0.018 6.982 19 S 0.511 5.489 20 N -0.085 5.085 21 O 0.019 5.981 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.113 0.887 26 H 0.121 0.879 27 H 0.173 0.827 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.046 -18.764 -5.991 19.725 hybrid contribution -0.246 0.043 1.067 1.096 sum -1.292 -18.721 -4.924 19.401 Atomic orbital electron populations 1.69976 1.06169 1.26928 1.49808 1.25017 0.94880 0.99502 0.94865 0.86442 0.80045 0.83291 0.77668 1.19534 1.20930 1.20922 1.21090 0.93216 0.90117 1.52015 0.91908 1.19183 0.93574 0.89808 0.98587 1.20847 0.98027 0.83339 1.04702 1.29595 0.93648 0.96834 0.79207 1.72123 1.16666 1.04629 1.28922 1.22599 1.00160 0.94267 0.87620 1.21351 1.07841 0.97262 0.96596 1.20145 0.98414 0.92486 1.01786 1.20009 1.03125 1.02222 0.89795 1.25677 1.10568 1.01327 0.92836 1.98372 1.88988 1.72412 1.38446 1.84741 1.51587 1.13350 0.99244 1.74953 1.15596 1.03957 1.14031 1.85278 1.52004 1.24690 1.36150 0.92761 0.95463 0.95688 0.88746 0.87945 0.82708 0.82789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.03 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 15 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 15 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 7 C -0.53 -13.75 9.11 -34.44 -0.31 -14.07 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 9 C 0.03 0.64 4.96 -27.88 -0.14 0.50 15 10 C -0.03 -0.55 5.78 -27.89 -0.16 -0.71 15 11 C 0.23 4.15 7.74 -12.97 -0.10 4.05 15 12 N -0.49 -9.21 11.58 -9.88 -0.11 -9.32 15 13 C 0.22 3.90 8.02 -156.02 -1.25 2.65 15 14 C -0.11 -1.59 6.44 -36.92 -0.24 -1.83 15 15 C -0.09 -1.11 10.05 -40.93 -0.41 -1.52 15 16 C -0.12 -1.19 10.11 -41.27 -0.42 -1.61 15 17 C -0.16 -1.69 7.10 29.20 0.21 -1.48 15 18 Cl -0.01 -0.10 29.29 -51.86 -1.52 -1.62 15 19 S 0.25 3.08 23.31 -107.50 -2.51 0.57 15 20 N -0.38 -6.68 12.16 30.99 0.38 -6.30 15 21 O 0.08 1.42 11.29 18.00 0.20 1.62 15 22 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 23 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 24 H 0.02 0.64 8.14 -51.93 -0.42 0.21 15 25 H 0.09 1.53 8.14 -51.93 -0.42 1.11 15 26 H 0.10 1.78 8.14 -51.93 -0.42 1.35 15 27 H 0.16 1.66 8.06 -52.49 -0.42 1.24 15 28 H 0.15 1.13 8.06 -52.48 -0.42 0.71 15 LS Contribution 291.28 15.07 4.39 4.39 Total: -1.00 -29.03 291.28 -8.45 -37.48 By element: Atomic # 1 Polarization: -2.81 SS G_CDS: -2.08 Total: -4.89 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -2.92 Total: -12.49 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 1.00 Total: -40.65 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.20 Total: 1.62 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.51 Total: 0.57 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.52 Total: -1.62 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.03 -8.45 -37.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291063930.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.469 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds