Wall clock time and date at job start Tue Mar 31 2020 05:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47194 * 2 1 4 4 N 1.30654 * 123.00553 * 90.03074 * 3 2 1 5 5 C 1.30322 * 117.31956 * 179.97438 * 4 3 2 6 6 N 1.37844 * 124.72801 * 180.02562 * 5 4 3 7 7 C 1.34775 * 119.99453 * 179.97438 * 6 5 4 8 8 O 1.21753 * 120.00581 * 359.97438 * 7 6 5 9 9 C 1.41731 * 119.99905 * 179.97438 * 7 6 5 10 10 H 1.08000 * 119.99864 * 0.02562 * 9 7 6 11 11 C 1.40150 * 120.00287 * 179.97438 * 9 7 6 12 12 N 1.30629 * 119.99979 * 0.02562 * 11 9 7 13 13 Si 1.86794 * 120.00352 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46660 * 60.00086 * 13 11 9 15 15 H 1.48498 * 109.47431 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47497 * 300.00540 * 13 11 9 17 17 S 1.70915 * 110.53992 * 359.97438 * 5 4 3 18 18 C 1.37087 * 123.01228 * 269.98689 * 3 2 1 19 19 C 1.46239 * 126.13160 * 0.06038 * 18 3 2 20 20 O 1.21646 * 120.00004 * 0.02562 * 19 18 3 21 21 O 1.34923 * 120.00093 * 179.97438 * 19 18 3 22 22 C 1.42902 * 117.00069 * 180.02562 * 21 19 18 23 23 H 1.09008 * 109.47444 * 59.99001 * 1 2 3 24 24 H 1.08989 * 109.47731 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46808 * 299.99756 * 1 2 3 26 26 H 1.09000 * 109.46496 * 240.00942 * 2 1 3 27 27 H 1.08996 * 109.47303 * 120.00617 * 2 1 3 28 28 H 0.96993 * 120.00125 * 359.97438 * 6 5 4 29 29 H 0.96997 * 120.00216 * 180.02562 * 12 11 9 30 30 H 1.09001 * 109.46647 * 299.99602 * 22 21 19 31 31 H 1.09001 * 109.47249 * 59.99731 * 22 21 19 32 32 H 1.08994 * 109.47154 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2702 2.0916 1.0957 5 6 2.7029 3.3141 0.9666 6 7 3.0018 4.1563 2.0161 7 6 3.4445 5.4057 1.7723 8 8 3.5809 5.7904 0.6253 9 6 3.7515 6.2718 2.8514 10 1 3.6310 5.9305 3.8689 11 6 4.2123 7.5709 2.5980 12 7 4.3586 7.9836 1.3673 13 14 4.6162 8.7127 4.0201 14 1 5.6876 8.1078 4.8517 15 1 5.0795 10.0199 3.4893 16 1 3.4021 8.9183 4.8501 17 16 2.8493 3.7271 -0.6855 18 6 2.2816 2.1249 -1.1495 19 6 2.1071 1.6343 -2.5161 20 8 1.7053 0.5026 -2.7094 21 8 2.3909 2.4374 -3.5626 22 6 2.1969 1.8930 -4.8695 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8932 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.8936 3.8497 2.9299 29 1 4.6779 8.8826 1.1919 30 1 2.8296 1.0143 -4.9946 31 1 1.1518 1.6089 -4.9933 32 1 2.4616 2.6403 -5.6174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292142039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:43 Heat of formation + Delta-G solvation = -88.133207 kcal Electronic energy + Delta-G solvation = -19709.304539 eV Core-core repulsion = 16375.757695 eV Total energy + Delta-G solvation = -3333.546843 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.21529 -39.38550 -38.12360 -36.17335 -34.20971 -32.97976 -32.26579 -29.63470 -27.70611 -26.95550 -24.99676 -22.78365 -22.01934 -20.64805 -19.52823 -17.97025 -17.55006 -16.71634 -16.26350 -16.18506 -15.79431 -15.08689 -14.78142 -14.32919 -13.95507 -13.64623 -13.33211 -13.15861 -12.87678 -12.76522 -11.99559 -11.92291 -11.69141 -11.57512 -11.27014 -11.04460 -11.02326 -10.64548 -10.55109 -10.36476 -10.07155 -9.88307 -9.25478 -9.17210 -8.61420 -8.24599 -7.43714 -6.73870 -5.29206 0.89833 1.80923 2.57208 2.73011 2.92426 2.97218 2.99625 3.08659 3.44554 3.64370 3.95896 4.06383 4.94889 5.21586 5.25609 5.27455 5.28016 5.42199 5.62693 5.63238 5.73052 5.84300 6.15113 6.34764 6.39695 6.48518 6.71731 6.91809 7.21536 7.29710 7.63268 8.09830 8.21279 8.43751 8.72448 9.83330 10.13249 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.004523 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.947623 B = 6188.677642 C = 7100.763216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.060 4.060 3 C 0.209 3.791 4 N -0.560 5.560 5 C 0.294 3.706 6 N -0.626 5.626 7 C 0.522 3.478 8 O -0.541 6.541 9 C -0.516 4.516 10 H 0.080 0.920 11 C 0.085 3.915 12 N -0.734 5.734 13 Si 0.923 3.077 14 H -0.263 1.263 15 H -0.275 1.275 16 H -0.263 1.263 17 S 0.320 5.680 18 C -0.426 4.426 19 C 0.558 3.442 20 O -0.519 6.519 21 O -0.353 6.353 22 C 0.038 3.962 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.409 0.591 29 H 0.281 0.719 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.075 -7.423 -3.792 8.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 C 0.064 3.936 4 N -0.285 5.285 5 C -0.071 4.071 6 N -0.273 5.273 7 C 0.334 3.666 8 O -0.426 6.426 9 C -0.550 4.550 10 H 0.098 0.902 11 C -0.141 4.141 12 N -0.360 5.360 13 Si 0.746 3.254 14 H -0.187 1.187 15 H -0.200 1.200 16 H -0.187 1.187 17 S 0.573 5.427 18 C -0.549 4.549 19 C 0.405 3.595 20 O -0.411 6.411 21 O -0.269 6.269 22 C -0.056 4.056 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.246 0.754 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.692 -6.346 -4.711 8.349 hybrid contribution -0.200 -0.586 1.162 1.317 sum -2.892 -6.932 -3.549 8.307 Atomic orbital electron populations 1.21567 0.94277 1.01476 1.01873 1.20356 0.96401 0.89386 1.03771 1.20340 0.92022 0.96366 0.84860 1.66202 1.25335 1.05435 1.31562 1.24051 0.95015 0.91056 0.96951 1.43966 1.63362 1.13317 1.06634 1.17455 0.79499 0.78162 0.91473 1.90580 1.58025 1.71539 1.22484 1.19944 1.44539 0.97306 0.93256 0.90173 1.25823 0.93076 0.98283 0.96886 1.69943 1.28089 1.17681 1.20314 0.86147 0.79859 0.78693 0.80696 1.18727 1.20007 1.18732 1.85453 1.58330 1.04331 0.94633 1.25082 1.29220 1.06450 0.94165 1.19383 0.73455 0.82651 0.84000 1.90766 1.44878 1.19532 1.85891 1.86235 1.79933 1.45233 1.15524 1.22821 1.01790 1.00030 0.80964 0.92689 0.92327 0.92769 0.88445 0.90651 0.75430 0.90791 0.92421 0.92416 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.89 37.16 0.37 -1.51 16 2 C -0.06 -0.94 5.77 -27.88 -0.16 -1.10 16 3 C 0.21 3.96 6.09 -83.51 -0.51 3.45 16 4 N -0.56 -11.27 10.53 -10.88 -0.11 -11.38 16 5 C 0.29 6.29 8.15 -87.90 -0.72 5.57 16 6 N -0.63 -13.53 5.35 -15.82 -0.08 -13.61 16 7 C 0.52 13.18 7.53 -14.93 -0.11 13.07 16 8 O -0.54 -15.07 12.28 5.14 0.06 -15.01 16 9 C -0.52 -12.63 9.31 -37.53 -0.35 -12.98 16 10 H 0.08 1.75 7.85 -52.49 -0.41 1.34 16 11 C 0.08 2.05 5.50 -17.35 -0.10 1.95 16 12 N -0.73 -19.13 11.73 55.56 0.65 -18.47 16 13 Si 0.92 17.52 29.56 -169.99 -5.02 12.50 16 14 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 15 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 16 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 17 S 0.32 6.74 19.99 -107.50 -2.15 4.59 16 18 C -0.43 -8.25 6.51 -36.79 -0.24 -8.49 16 19 C 0.56 10.13 7.90 33.94 0.27 10.40 16 20 O -0.52 -9.48 14.10 -19.38 -0.27 -9.75 16 21 O -0.35 -5.82 10.36 -41.10 -0.43 -6.24 16 22 C 0.04 0.45 10.45 101.05 1.06 1.51 16 23 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 24 H 0.06 0.68 8.14 -51.94 -0.42 0.26 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.10 1.55 6.06 -51.93 -0.31 1.24 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.41 7.67 8.77 -40.82 -0.36 7.31 16 29 H 0.28 6.59 8.29 -40.82 -0.34 6.25 16 30 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 31 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 300.24 15.07 4.52 4.52 Total: -1.00 -29.47 300.24 -6.50 -35.97 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -3.18 Total: 5.02 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -0.49 Total: 11.87 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.45 Total: -43.47 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.64 Total: -31.00 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.02 Total: 12.50 kcal Atomic # 16 Polarization: 6.74 SS G_CDS: -2.15 Total: 4.59 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.47 -6.50 -35.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292142039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.166 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds