Wall clock time and date at job start Tue Mar 31 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00120 * 2 1 4 4 H 1.48490 * 109.47119 * 269.99501 * 3 2 1 5 5 H 1.48501 * 109.46969 * 30.00165 * 3 2 1 6 6 H 1.48504 * 109.46721 * 149.99785 * 3 2 1 7 7 C 1.37876 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00155 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00275 * 180.02562 * 7 2 1 10 10 O 1.42898 * 109.47576 * 179.97438 * 9 7 2 11 11 C 1.42890 * 114.00087 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47390 * 179.97438 * 11 10 9 13 13 S 1.81398 * 109.47492 * 179.97438 * 12 11 10 14 14 C 1.76201 * 102.99937 * 179.97438 * 13 12 11 15 15 N 1.32488 * 119.71433 * 359.97438 * 14 13 12 16 16 C 1.31928 * 121.61754 * 179.97438 * 15 14 13 17 17 C 1.38075 * 120.85946 * 359.71487 * 16 15 14 18 18 C 1.38866 * 119.33724 * 0.58841 * 17 16 15 19 19 C 1.38315 * 118.51022 * 359.42310 * 18 17 16 20 20 N 1.35504 * 120.45316 * 180.26085 * 19 18 17 21 21 O 1.21804 * 119.99602 * 359.97438 * 20 19 18 22 22 O 1.21793 * 120.00018 * 180.02562 * 20 19 18 23 23 H 0.96998 * 119.99781 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47188 * 59.99312 * 9 7 2 25 25 H 1.08997 * 109.46345 * 300.00035 * 9 7 2 26 26 H 1.09004 * 109.47153 * 59.99787 * 11 10 9 27 27 H 1.08996 * 109.47438 * 300.00172 * 11 10 9 28 28 H 1.09004 * 109.47098 * 59.99812 * 12 11 10 29 29 H 1.09004 * 109.46869 * 300.00214 * 12 11 10 30 30 H 1.08003 * 119.56936 * 179.97438 * 16 15 14 31 31 H 1.08003 * 120.33385 * 180.30878 * 17 16 15 32 32 H 1.08002 * 120.74704 * 179.70562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 8 3.9878 -2.5415 0.0022 11 6 5.4123 -2.6543 0.0022 12 6 5.8068 -4.1326 0.0041 13 16 7.6151 -4.2759 0.0034 14 6 7.8746 -6.0187 0.0064 15 7 6.8332 -6.8377 0.0090 16 6 6.9840 -8.1483 0.0108 17 6 8.2425 -8.7164 0.0042 18 6 9.3607 -7.8930 0.0080 19 6 9.1716 -6.5228 0.0061 20 7 10.2349 -5.6829 0.0043 21 8 11.3667 -6.1331 0.0048 22 8 10.0589 -4.4777 0.0030 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6801 0.8911 25 1 3.8751 -0.6806 -0.8889 26 1 5.8151 -2.1700 0.8918 27 1 5.8151 -2.1715 -0.8881 28 1 5.4039 -4.6173 -0.8853 29 1 5.4041 -4.6150 0.8947 30 1 6.1117 -8.7852 0.0133 31 1 8.3561 -9.7904 0.0008 32 1 10.3557 -8.3131 0.0077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292595827.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:18 Heat of formation + Delta-G solvation = 1.249607 kcal Electronic energy + Delta-G solvation = -18858.871696 eV Core-core repulsion = 15529.200782 eV Total energy + Delta-G solvation = -3329.670914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.25678 -40.57109 -37.16075 -36.88239 -33.96119 -32.84255 -32.73598 -31.16853 -27.83595 -27.65246 -24.86995 -23.60566 -22.50318 -21.92114 -20.00993 -19.11618 -18.48930 -18.18275 -16.95371 -16.89948 -16.28079 -15.71790 -15.65790 -14.85024 -14.59948 -14.48009 -13.88637 -13.38627 -13.34912 -13.00938 -12.54052 -12.15620 -11.64191 -11.60434 -11.32047 -11.17219 -11.07229 -10.84095 -10.77116 -10.63484 -10.50511 -10.13728 -9.88576 -9.26169 -8.97002 -8.56511 -8.19281 -6.16578 -4.16634 -0.89399 0.19006 0.75859 1.14262 1.65702 1.89803 2.74150 3.22426 3.29705 3.30840 3.56692 3.71250 4.02430 4.07904 4.31482 4.45587 4.58471 4.84951 5.01931 5.10408 5.14766 5.34261 5.49270 5.58914 5.88411 5.98997 6.34250 6.51480 6.77322 6.91324 7.45356 7.51703 7.88240 8.57076 8.93477 9.41801 10.96260 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.032976 B = 0.003146 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.895829 B = 8898.869179 C = 9722.015749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.083 0.917 9 C 0.169 3.831 10 O -0.376 6.376 11 C 0.076 3.924 12 C -0.158 4.158 13 S 0.116 5.884 14 C 0.171 3.829 15 N -0.485 5.485 16 C 0.189 3.811 17 C -0.199 4.199 18 C 0.026 3.974 19 C -0.129 4.129 20 N 0.084 4.916 21 O -0.204 6.204 22 O -0.170 6.170 23 H 0.267 0.733 24 H 0.006 0.994 25 H 0.002 0.998 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.182 0.818 31 H 0.161 0.839 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.616 -18.072 0.034 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.101 0.899 9 C 0.094 3.906 10 O -0.295 6.295 11 C -0.003 4.003 12 C -0.306 4.306 13 S 0.365 5.635 14 C -0.079 4.079 15 N -0.199 5.199 16 C 0.025 3.975 17 C -0.224 4.224 18 C -0.002 4.002 19 C -0.235 4.235 20 N 0.580 4.420 21 O -0.402 6.402 22 O -0.371 6.371 23 H 0.077 0.923 24 H 0.024 0.976 25 H 0.020 0.980 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.199 0.801 31 H 0.178 0.822 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 18.732 -16.976 0.035 25.280 hybrid contribution 0.569 -0.260 -0.013 0.626 sum 19.301 -17.236 0.021 25.877 Atomic orbital electron populations 1.69870 1.06080 1.27219 1.50037 1.24761 0.94826 0.98801 0.94494 0.86847 0.80393 0.83642 0.78893 1.19812 1.20669 1.18987 1.20863 0.88081 0.95422 1.51669 0.89912 1.20668 0.96280 0.78954 0.94711 1.87919 1.16295 1.30154 1.95149 1.21823 0.85923 0.92067 1.00505 1.24046 0.96647 1.01709 1.08173 1.87136 1.04451 0.90957 1.80974 1.23743 0.89366 1.02761 0.92058 1.68650 1.29540 1.05258 1.16404 1.23485 0.98202 0.90743 0.85072 1.22216 0.92078 1.02370 1.05720 1.21635 1.02366 0.89714 0.86473 1.19126 0.88150 0.93169 1.23017 1.39224 1.01790 1.01538 0.99400 1.94558 1.08547 1.80996 1.56094 1.94472 1.90727 0.97266 1.54594 0.92257 0.97602 0.98045 0.93234 0.93230 0.87858 0.87846 0.80129 0.82166 0.81295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.42 13.96 55.43 0.77 -26.65 16 2 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.52 -15.46 9.99 -34.44 -0.34 -15.80 16 8 H 0.08 2.67 8.06 -52.48 -0.42 2.25 16 9 C 0.17 4.27 4.76 36.01 0.17 4.44 16 10 O -0.38 -8.64 10.33 -35.23 -0.36 -9.00 16 11 C 0.08 1.31 5.95 37.16 0.22 1.54 16 12 C -0.16 -2.28 5.57 37.16 0.21 -2.08 16 13 S 0.12 1.49 18.54 -107.50 -1.99 -0.50 16 14 C 0.17 2.01 7.00 -16.93 -0.12 1.89 16 15 N -0.48 -5.12 9.43 -12.11 -0.11 -5.24 16 16 C 0.19 1.21 11.17 -17.57 -0.20 1.02 16 17 C -0.20 -0.95 10.11 -39.41 -0.40 -1.34 16 18 C 0.03 0.18 9.54 -39.32 -0.37 -0.19 16 19 C -0.13 -1.41 6.52 -85.87 -0.56 -1.97 16 20 N 0.08 1.08 4.06 31.55 0.13 1.21 16 21 O -0.20 -2.64 18.10 -29.46 -0.53 -3.18 16 22 O -0.17 -2.43 15.36 -29.46 -0.45 -2.88 16 23 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.01 0.15 7.20 -51.93 -0.37 -0.22 16 25 H 0.00 0.04 7.57 -51.93 -0.39 -0.35 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.10 1.50 8.14 -51.92 -0.42 1.08 16 29 H 0.10 1.51 8.14 -51.92 -0.42 1.08 16 30 H 0.18 0.53 8.06 -52.48 -0.42 0.11 16 31 H 0.16 0.16 8.06 -52.48 -0.42 -0.26 16 32 H 0.17 0.83 7.50 -52.49 -0.39 0.44 16 LS Contribution 301.39 15.07 4.54 4.54 Total: -1.00 -34.08 301.39 -7.46 -41.54 By element: Atomic # 1 Polarization: -2.66 SS G_CDS: -3.29 Total: -5.95 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -1.49 Total: -10.45 kcal Atomic # 7 Polarization: -31.46 SS G_CDS: 0.79 Total: -30.67 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -1.35 Total: -15.06 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -1.99 Total: -0.50 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.08 -7.46 -41.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292595827.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.790 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds