Wall clock time and date at job start Tue Mar 31 2020 05:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00232 * 2 1 4 4 C 1.50701 * 109.47434 * 293.95690 * 3 2 1 5 5 H 1.08004 * 119.99416 * 359.97438 * 4 3 2 6 6 C 1.37870 * 120.00334 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00130 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00087 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47354 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47432 * 119.99825 * 8 6 4 11 11 H 1.48507 * 109.47140 * 240.00035 * 8 6 4 12 12 C 1.46897 * 111.00323 * 123.95749 * 2 1 3 13 13 C 1.50705 * 109.47253 * 66.04266 * 12 2 1 14 14 C 1.38694 * 120.78035 * 269.98155 * 13 12 2 15 15 C 1.38166 * 119.18509 * 180.02562 * 14 13 12 16 16 N 1.31903 * 120.77334 * 359.97438 * 15 14 13 17 17 C 1.31930 * 121.71351 * 359.70656 * 16 15 14 18 18 Br 1.89101 * 119.63049 * 180.28667 * 17 16 15 19 19 C 1.38352 * 120.73690 * 0.58919 * 17 16 15 20 20 H 1.09007 * 109.46600 * 296.04334 * 1 2 3 21 21 H 1.09001 * 109.47172 * 56.04241 * 1 2 3 22 22 H 1.09003 * 109.47350 * 176.04995 * 1 2 3 23 23 H 1.08995 * 109.47096 * 53.96034 * 3 2 1 24 24 H 1.09007 * 109.47457 * 173.95546 * 3 2 1 25 25 H 0.96999 * 120.00456 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.46906 * 306.04039 * 12 2 1 27 27 H 1.09006 * 109.47425 * 186.04149 * 12 2 1 28 28 H 1.08003 * 120.41483 * 359.97438 * 14 13 12 29 29 H 1.07999 * 119.61056 * 179.97438 * 15 14 13 30 30 H 1.08002 * 120.42580 * 179.70500 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0746 1.5113 -2.0487 6 6 2.0268 3.3495 -1.5284 7 7 2.7120 4.0019 -0.6149 8 14 1.5817 4.1873 -3.1375 9 1 0.8135 3.2451 -3.9904 10 1 0.7542 5.3883 -2.8580 11 1 2.8232 4.5949 -3.8433 12 6 1.9955 -0.7660 1.1375 13 6 1.6369 -2.2205 0.9727 14 6 0.4517 -2.7223 1.4895 15 6 0.1561 -4.0612 1.3198 16 7 0.9855 -4.8590 0.6751 17 6 2.1185 -4.4155 0.1649 18 35 3.2601 -5.6095 -0.7553 19 6 2.4836 -3.0880 0.3011 20 1 -0.3633 0.4512 0.9234 21 1 -0.3633 0.5740 -0.8524 22 1 -0.3634 -1.0252 -0.0708 23 1 1.5612 1.9273 0.8309 24 1 3.0798 1.3444 0.1082 25 1 2.9860 4.9182 -0.7766 26 1 1.5612 -0.3873 2.0627 27 1 3.0798 -0.6612 1.1755 28 1 -0.2316 -2.0746 2.0188 29 1 -0.7647 -4.4593 1.7197 30 1 3.4145 -2.7314 -0.1144 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292869102.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:34 Heat of formation + Delta-G solvation = 19.969952 kcal Electronic energy + Delta-G solvation = -14406.475699 eV Core-core repulsion = 11861.145168 eV Total energy + Delta-G solvation = -2545.330531 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.33872 -38.37568 -35.02804 -33.72492 -33.38684 -30.70625 -29.41177 -28.45485 -26.01540 -24.38027 -23.21283 -21.84147 -18.58040 -17.71112 -17.48805 -16.82827 -16.54353 -16.14282 -15.67627 -15.12229 -15.06629 -14.69083 -13.98428 -13.52716 -13.35859 -13.03460 -12.80595 -12.64294 -12.39395 -12.29942 -11.98477 -11.90539 -11.49444 -11.36024 -10.75163 -10.64261 -10.60444 -9.95003 -9.07237 -8.21194 -6.30601 -0.14059 0.11927 0.32346 1.41058 1.42601 1.55281 2.39741 2.57451 3.12220 3.33389 3.47406 3.71851 3.90225 4.02996 4.06278 4.43758 4.48701 4.61746 4.69781 4.73500 4.81916 5.05132 5.17648 5.24977 5.30193 5.51172 5.63935 6.02711 6.26346 6.55733 6.66081 6.85088 7.39196 8.89883 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.026544 B = 0.004076 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.602526 B = 6868.466128 C = 7459.391127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.545 5.545 3 C 0.208 3.792 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.005 3.995 7 N -0.933 5.933 8 Si 0.966 3.034 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.089 3.911 13 C -0.023 4.023 14 C -0.146 4.146 15 C 0.109 3.891 16 N -0.486 5.486 17 C 0.108 3.892 18 Br -0.009 7.009 19 C -0.127 4.127 20 H 0.022 0.978 21 H 0.055 0.945 22 H 0.074 0.926 23 H -0.030 1.030 24 H 0.008 0.992 25 H 0.265 0.735 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.162 0.838 29 H 0.199 0.801 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.627 -18.270 4.059 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.269 5.269 3 C 0.082 3.918 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.194 4.194 7 N -0.573 5.573 8 Si 0.791 3.209 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.205 1.205 12 C -0.039 4.039 13 C -0.032 4.032 14 C -0.167 4.167 15 C -0.050 4.050 16 N -0.197 5.197 17 C -0.108 4.108 18 Br 0.075 6.925 19 C -0.149 4.149 20 H 0.040 0.960 21 H 0.074 0.926 22 H 0.092 0.908 23 H -0.012 1.012 24 H 0.026 0.974 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.180 0.820 29 H 0.216 0.784 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.163 -19.660 3.215 20.039 hybrid contribution -0.148 2.309 0.326 2.337 sum -2.311 -17.351 3.541 17.859 Atomic orbital electron populations 1.22277 0.87338 1.01130 1.00291 1.62024 1.08566 1.15500 1.40843 1.19417 0.93973 0.83219 0.95233 1.21473 1.34837 0.97419 1.02389 0.92083 1.25839 0.95013 0.98042 1.00461 1.70070 1.39330 1.11907 1.36038 0.85383 0.78059 0.78248 0.79223 1.18946 1.20368 1.20494 1.21068 1.00961 0.88801 0.93033 1.20304 0.93990 0.95155 0.93755 1.22481 0.96688 0.97474 1.00042 1.23306 0.98404 0.89674 0.93566 1.67446 1.02859 1.39841 1.09522 1.22795 0.95141 0.92059 1.00785 1.96737 1.59805 1.62039 1.73909 1.21946 1.02015 0.91886 0.99100 0.95977 0.92584 0.90766 1.01236 0.97358 0.92655 0.92934 0.90219 0.82020 0.78405 0.83822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 8.99 127.69 1.15 2.50 16 2 N -0.54 -22.19 4.74 -931.64 -4.42 -26.61 16 3 C 0.21 10.59 4.72 85.56 0.40 10.99 16 4 C -0.52 -28.90 8.46 25.60 0.22 -28.69 16 5 H 0.06 3.35 7.12 -2.91 -0.02 3.33 16 6 C 0.00 0.26 5.46 84.65 0.46 0.72 16 7 N -0.93 -54.86 13.29 21.44 0.28 -54.58 16 8 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 9 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.09 2.88 5.16 85.56 0.44 3.32 16 13 C -0.02 -0.62 4.90 -19.67 -0.10 -0.72 16 14 C -0.15 -3.19 8.13 22.36 0.18 -3.01 16 15 C 0.11 2.24 11.18 84.67 0.95 3.19 16 16 N -0.49 -12.70 10.32 -190.74 -1.97 -14.67 16 17 C 0.11 2.94 7.16 84.71 0.61 3.54 16 18 Br -0.01 -0.22 33.87 -20.37 -0.69 -0.90 16 19 C -0.13 -3.54 9.54 22.38 0.21 -3.33 16 20 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 21 H 0.06 2.23 6.76 -2.39 -0.02 2.22 16 22 H 0.07 2.22 6.18 -2.39 -0.01 2.20 16 23 H -0.03 -1.64 8.12 -2.39 -0.02 -1.66 16 24 H 0.01 0.46 7.93 -2.38 -0.02 0.44 16 25 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.05 1.58 8.08 -2.39 -0.02 1.56 16 27 H 0.08 2.62 7.89 -2.38 -0.02 2.60 16 28 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 29 H 0.20 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -63.12 279.51 0.89 -62.23 By element: Atomic # 1 Polarization: -0.73 SS G_CDS: 1.13 Total: 0.40 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 4.52 Total: -11.48 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -6.10 Total: -95.85 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -0.69 Total: -0.90 kcal Total: -63.12 0.89 -62.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292869102.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.202 kcal (2) G-P(sol) polarization free energy of solvation -63.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds