Wall clock time and date at job start Tue Mar 31 2020 06:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.38925 * 121.35796 * 264.52926 * 3 2 1 5 5 C 1.39965 * 119.41872 * 180.02562 * 4 3 2 6 6 N 1.38924 * 118.81567 * 180.02562 * 5 4 3 7 7 C 1.32820 * 120.00188 * 354.14102 * 6 5 4 8 8 H 1.08002 * 119.99736 * 5.14568 * 7 6 5 9 9 C 1.46809 * 120.00268 * 185.14235 * 7 6 5 10 10 N 1.29322 * 119.99522 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00139 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47034 * 60.00109 * 11 9 7 13 13 H 1.48502 * 109.47047 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47088 * 300.00014 * 11 9 7 15 15 N 1.31495 * 122.36715 * 0.02620 * 5 4 3 16 16 C 1.33470 * 122.35467 * 359.97438 * 15 5 4 17 17 C 1.40704 * 121.09664 * 179.97438 * 16 15 5 18 18 C 1.36113 * 119.71463 * 179.80632 * 17 16 15 19 19 C 1.39312 * 121.08942 * 0.47863 * 18 17 16 20 20 N 1.48015 * 119.59285 * 179.77277 * 19 18 17 21 21 O 1.31701 * 119.99754 * 179.72744 * 20 19 18 22 22 O 1.31700 * 119.99795 * 359.45155 * 20 19 18 23 23 C 1.36357 * 120.80813 * 359.49460 * 19 18 17 24 24 C 1.39884 * 119.59936 * 0.25950 * 23 19 18 25 25 H 1.08003 * 120.29385 * 0.02562 * 4 3 2 26 26 H 0.97006 * 119.99741 * 174.14897 * 6 5 4 27 27 H 0.96998 * 119.99237 * 179.97438 * 10 9 7 28 28 H 1.08000 * 120.14465 * 0.05073 * 17 16 15 29 29 H 1.08000 * 119.45223 * 180.23221 * 18 17 16 30 30 H 1.07999 * 120.19898 * 180.23505 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2909 0.1141 1.1809 5 6 4.6898 0.1107 1.1337 6 7 5.4001 0.2243 2.3222 7 6 4.7563 0.4501 3.4618 8 1 3.6765 0.4627 3.4786 9 6 5.5124 0.6824 4.6985 10 7 6.8054 0.6668 4.6784 11 14 4.6069 0.9993 6.3013 12 1 3.7448 -0.1667 6.6216 13 1 5.5915 1.2014 7.3945 14 1 3.7646 2.2143 6.1622 15 7 5.3558 0.0039 0.0050 16 6 4.7454 -0.1094 -1.1766 17 6 5.4845 -0.2216 -2.3686 18 6 4.8330 -0.3397 -3.5578 19 6 3.4412 -0.3418 -3.6185 20 7 2.7670 -0.4672 -4.9302 21 8 1.4516 -0.4755 -4.9963 22 8 3.4824 -0.5649 -6.0316 23 6 2.6925 -0.2356 -2.4838 24 6 3.3297 -0.1175 -1.2441 25 1 2.7781 0.2040 2.1271 26 1 6.3664 0.1388 2.3197 27 1 7.3049 0.8207 5.4955 28 1 6.5641 -0.2179 -2.3397 29 1 5.4045 -0.4294 -4.4698 30 1 1.6141 -0.2421 -2.5419 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302746276.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:38 Heat of formation + Delta-G solvation = 109.125810 kcal Electronic energy + Delta-G solvation = -20244.320399 eV Core-core repulsion = 16816.176149 eV Total energy + Delta-G solvation = -3428.144251 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.070 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.25097 -38.53525 -37.38321 -36.44757 -35.31485 -33.50483 -33.42497 -32.69901 -29.88733 -29.59933 -26.45565 -25.06414 -24.30060 -22.41946 -21.81701 -19.73729 -19.12126 -18.12362 -17.30136 -16.75887 -16.42350 -15.81667 -15.26999 -15.04592 -14.77100 -14.50845 -14.30050 -13.71764 -13.39378 -13.27175 -13.10333 -12.71350 -12.58151 -12.50994 -12.07221 -11.88681 -11.55323 -11.31782 -11.09999 -10.74212 -10.39380 -10.17374 -9.93267 -9.89343 -9.86897 -8.84269 -8.33573 -8.31156 -7.77397 -4.57197 -0.14668 0.78801 1.55470 2.11296 2.22901 2.29368 2.34400 2.40069 2.84937 2.93736 3.06475 3.57857 3.63136 3.70462 4.17813 4.67603 4.84616 5.13278 5.26396 5.34343 5.47195 5.53375 5.67048 5.78861 6.02040 6.07546 6.14335 6.36784 6.52975 6.63685 6.76803 6.82344 6.96130 7.25608 7.69593 7.74961 7.80147 7.86496 8.67987 8.90592 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.027536 B = 0.003996 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.624634 B = 7005.522719 C = 8005.858273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.267 3.733 3 C -0.001 4.001 4 C -0.070 4.070 5 C 0.233 3.767 6 N -0.399 5.399 7 C -0.249 4.249 8 H 0.142 0.858 9 C 0.038 3.962 10 N -0.753 5.753 11 Si 0.957 3.043 12 H -0.250 1.250 13 H -0.264 1.264 14 H -0.250 1.250 15 N -0.585 5.585 16 C 0.278 3.722 17 C -0.157 4.157 18 C -0.022 4.022 19 C -0.102 4.102 20 N 0.027 4.973 21 O -0.267 6.267 22 O -0.261 6.261 23 C 0.011 3.989 24 C -0.176 4.176 25 H 0.138 0.862 26 H 0.417 0.583 27 H 0.317 0.683 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 0.760 7.851 8.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.047 4.047 3 C -0.010 4.010 4 C -0.095 4.095 5 C -0.009 4.009 6 N 0.013 4.987 7 C -0.390 4.390 8 H 0.159 0.841 9 C -0.189 4.189 10 N -0.376 5.376 11 Si 0.777 3.223 12 H -0.173 1.173 13 H -0.188 1.188 14 H -0.173 1.173 15 N -0.311 5.311 16 C 0.132 3.868 17 C -0.180 4.180 18 C -0.044 4.044 19 C -0.199 4.199 20 N 0.471 4.529 21 O -0.436 6.436 22 O -0.431 6.431 23 C -0.011 4.011 24 C -0.185 4.185 25 H 0.156 0.844 26 H 0.254 0.746 27 H 0.131 0.869 28 H 0.157 0.843 29 H 0.155 0.845 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.677 0.867 8.836 9.273 hybrid contribution -0.411 0.039 0.272 0.495 sum 2.266 0.906 9.108 9.430 Atomic orbital electron populations 1.81206 1.11836 1.09700 1.07565 1.25421 0.92326 0.93516 0.93445 1.16427 0.83592 1.07688 0.93324 1.21589 0.93393 0.97347 0.97211 1.17421 0.86855 1.10585 0.86029 1.40628 1.11296 1.42782 1.04040 1.22000 0.95597 1.37157 0.84227 0.84112 1.27740 0.95513 0.93539 1.02126 1.68611 1.08116 1.26361 1.34490 0.85413 0.79755 0.81387 0.75766 1.17347 1.18808 1.17312 1.66679 1.38259 1.30225 0.95967 1.18182 0.88008 0.89450 0.91188 1.20212 0.99781 1.09048 0.88972 1.20250 0.90865 0.94174 0.99139 1.19277 0.92282 1.28234 0.80129 1.50196 1.02434 0.96153 1.04087 1.96180 0.89949 1.61563 1.95874 1.96151 1.63930 1.60542 1.22520 1.20260 0.99843 0.91244 0.89755 1.18531 0.93570 1.16029 0.90380 0.84397 0.74562 0.86902 0.84338 0.84542 0.85149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.77 18.54 41.84 0.78 -6.99 16 2 C 0.27 4.55 14.36 -22.47 -0.32 4.23 16 3 C 0.00 -0.01 5.93 -104.45 -0.62 -0.63 16 4 C -0.07 -1.10 9.03 -38.68 -0.35 -1.45 16 5 C 0.23 4.01 7.56 -155.55 -1.18 2.84 16 6 N -0.40 -6.51 5.31 -9.93 -0.05 -6.56 16 7 C -0.25 -3.77 9.77 -13.66 -0.13 -3.91 16 8 H 0.14 1.88 5.61 -52.49 -0.29 1.58 16 9 C 0.04 0.55 5.70 -15.14 -0.09 0.47 16 10 N -0.75 -11.65 13.09 56.00 0.73 -10.92 16 11 Si 0.96 10.88 29.65 -169.99 -5.04 5.84 16 12 H -0.25 -2.87 7.11 56.52 0.40 -2.47 16 13 H -0.26 -3.02 7.11 56.52 0.40 -2.61 16 14 H -0.25 -2.90 7.11 56.52 0.40 -2.50 16 15 N -0.59 -10.74 10.27 -10.26 -0.11 -10.84 16 16 C 0.28 5.04 6.62 -84.89 -0.56 4.48 16 17 C -0.16 -2.58 9.99 -39.41 -0.39 -2.98 16 18 C -0.02 -0.38 9.47 -39.95 -0.38 -0.76 16 19 C -0.10 -1.99 6.85 -80.23 -0.55 -2.54 16 20 N 0.03 0.59 4.98 33.83 0.17 0.76 16 21 O -0.27 -6.23 19.09 -31.57 -0.60 -6.83 16 22 O -0.26 -5.82 19.11 -31.57 -0.60 -6.43 16 23 C 0.01 0.22 8.98 -39.64 -0.36 -0.14 16 24 C -0.18 -3.19 5.90 -104.68 -0.62 -3.80 16 25 H 0.14 1.83 5.87 -52.48 -0.31 1.53 16 26 H 0.42 6.93 8.10 -40.82 -0.33 6.60 16 27 H 0.32 4.33 8.26 -40.82 -0.34 3.99 16 28 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 29 H 0.14 2.11 7.53 -52.49 -0.40 1.72 16 30 H 0.13 2.50 6.82 -52.49 -0.36 2.14 16 LS Contribution 291.76 15.07 4.40 4.40 Total: -1.00 -23.13 291.76 -7.11 -30.24 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -1.24 Total: 11.53 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -5.54 Total: -4.20 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 1.52 Total: -34.56 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -1.21 Total: -13.26 kcal Atomic # 14 Polarization: 10.88 SS G_CDS: -5.04 Total: 5.84 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -23.13 -7.11 -30.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302746276.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.370 kcal (2) G-P(sol) polarization free energy of solvation -23.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds