Wall clock time and date at job start Tue Mar 31 2020 05:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39819 * 110.99791 * 236.04673 * 2 1 3 5 5 C 1.38685 * 120.10407 * 59.72468 * 4 2 1 6 6 C 1.38231 * 120.02228 * 179.76821 * 5 4 2 7 7 C 1.38437 * 120.23501 * 0.50786 * 6 5 4 8 8 Br 1.89100 * 119.89840 * 179.76720 * 7 6 5 9 9 C 1.38204 * 120.21074 * 359.74865 * 7 6 5 10 10 C 1.38922 * 119.97398 * 359.97438 * 9 7 6 11 11 N 1.39387 * 120.12075 * 179.97438 * 10 9 7 12 12 C 1.36804 * 119.99860 * 0.02562 * 11 10 9 13 13 H 1.08003 * 120.00531 * 359.97438 * 12 11 10 14 14 C 1.38756 * 120.00144 * 179.97438 * 12 11 10 15 15 N 1.31620 * 119.99843 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99987 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46948 * 90.00289 * 16 14 12 18 18 H 1.48503 * 109.47304 * 209.99655 * 16 14 12 19 19 H 1.48498 * 109.47495 * 330.00230 * 16 14 12 20 20 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 21 21 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 22 22 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 23 23 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 24 24 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 26 26 H 1.08002 * 119.99302 * 0.02562 * 5 4 2 27 27 H 1.08003 * 119.88414 * 180.25530 * 6 5 4 28 28 H 1.08000 * 120.02005 * 180.02562 * 9 7 6 29 29 H 0.97006 * 120.00777 * 180.02562 * 11 10 9 30 30 H 0.97003 * 119.99923 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9700 -0.7291 -1.0828 5 6 1.6546 -0.3533 -2.3800 6 6 2.1547 -1.0725 -3.4493 7 6 2.9627 -2.1752 -3.2309 8 35 3.6364 -3.1560 -4.7007 9 6 3.2789 -2.5613 -1.9422 10 6 2.7857 -1.8415 -0.8612 11 7 3.1022 -2.2286 0.4399 12 6 3.9004 -3.3188 0.6542 13 1 4.2849 -3.8799 -0.1848 14 6 4.2159 -3.7039 1.9493 15 7 3.7469 -3.0205 2.9718 16 14 5.3051 -5.1930 2.2418 17 1 6.7265 -4.7652 2.2879 18 1 4.9377 -5.8292 3.5324 19 1 5.1173 -6.1683 1.1379 20 1 -0.3634 -1.0252 0.0708 21 1 -0.3633 0.4513 -0.9233 22 1 -0.3633 0.5740 0.8525 23 1 1.6461 1.8947 0.8901 24 1 3.0851 1.3422 0.0005 25 1 1.6460 1.8948 -0.8900 26 1 1.0213 0.5039 -2.5549 27 1 1.9110 -0.7754 -4.4587 28 1 3.9098 -3.4219 -1.7754 29 1 2.7566 -1.7250 1.1935 30 1 3.9678 -3.2895 3.8772 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307105758.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:22 Heat of formation + Delta-G solvation = 38.480271 kcal Electronic energy + Delta-G solvation = -14875.973586 eV Core-core repulsion = 12331.445723 eV Total energy + Delta-G solvation = -2544.527863 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.16844 -36.05787 -35.04638 -32.03719 -30.77112 -28.46738 -27.78377 -27.13026 -24.72666 -23.63079 -21.05877 -20.16919 -17.67343 -16.75368 -15.61870 -15.03747 -14.48679 -14.41810 -13.80710 -13.51637 -13.20647 -12.87175 -12.51036 -11.93894 -11.78013 -11.71197 -11.41054 -11.27349 -11.00317 -10.79503 -10.74754 -10.41605 -9.98207 -9.76739 -9.68836 -8.79207 -7.93756 -7.84790 -6.78547 -6.63594 -3.78879 2.01738 2.35131 2.43683 3.12977 3.14374 3.17799 3.99841 4.43992 4.50823 5.11336 5.25587 5.56604 5.65240 5.70411 5.86697 5.88769 6.02795 6.23766 6.25059 6.39941 6.56029 6.72799 6.88490 7.11533 7.27969 7.29642 7.45511 7.53191 7.71802 8.16602 8.69925 9.30563 9.53345 10.51359 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.007966 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.184216 B = 3514.065023 C = 5467.533449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.494 5.494 3 C 0.034 3.966 4 C -0.039 4.039 5 C -0.076 4.076 6 C -0.226 4.226 7 C -0.016 4.016 8 Br -0.092 7.092 9 C -0.194 4.194 10 C 0.226 3.774 11 N -0.529 5.529 12 C -0.306 4.306 13 H 0.103 0.897 14 C 0.024 3.976 15 N -0.880 5.880 16 Si 0.931 3.069 17 H -0.275 1.275 18 H -0.281 1.281 19 H -0.267 1.267 20 H 0.066 0.934 21 H 0.022 0.978 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.021 0.979 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.126 0.874 29 H 0.413 0.587 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 3.235 -8.919 9.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.215 5.215 3 C -0.113 4.113 4 C -0.140 4.140 5 C -0.098 4.098 6 C -0.251 4.251 7 C -0.097 4.097 8 Br -0.008 7.008 9 C -0.220 4.220 10 C 0.098 3.902 11 N -0.128 5.128 12 C -0.436 4.436 13 H 0.120 0.880 14 C -0.181 4.181 15 N -0.516 5.516 16 Si 0.757 3.243 17 H -0.201 1.201 18 H -0.206 1.206 19 H -0.191 1.191 20 H 0.085 0.915 21 H 0.041 0.959 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.144 0.856 29 H 0.250 0.750 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.959 2.400 -8.516 9.062 hybrid contribution -0.070 0.156 0.139 0.221 sum -2.029 2.556 -8.377 8.990 Atomic orbital electron populations 1.22382 0.87397 1.02083 0.99480 1.59211 1.07259 1.12997 1.41983 1.22382 1.00855 0.88524 0.99546 1.17879 1.07948 0.99678 0.88459 1.20848 0.98444 0.98118 0.92377 1.19997 1.07562 0.99706 0.97862 1.21197 1.01049 0.96897 0.90522 1.96506 1.86812 1.74239 1.43207 1.20251 1.08355 1.04120 0.89315 1.17412 0.94598 0.92439 0.85752 1.41066 1.42381 1.25843 1.03495 1.19810 1.25073 1.05101 0.93612 0.87966 1.25340 0.98301 0.99431 0.94982 1.69729 1.43126 1.39369 0.99328 0.85834 0.79689 0.80497 0.78277 1.20081 1.20594 1.19122 0.91539 0.95910 0.92032 0.92003 0.91538 0.96003 0.87746 0.87587 0.85577 0.75000 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.34 60.07 0.56 1.09 16 2 N -0.49 -9.06 4.15 -186.62 -0.78 -9.83 16 3 C 0.03 0.54 9.33 60.06 0.56 1.10 16 4 C -0.04 -0.79 4.75 -83.50 -0.40 -1.18 16 5 C -0.08 -1.38 8.62 -39.42 -0.34 -1.72 16 6 C -0.23 -4.15 9.77 -39.51 -0.39 -4.54 16 7 C -0.02 -0.32 6.22 -39.52 -0.25 -0.57 16 8 Br -0.09 -1.54 33.69 -68.01 -2.29 -3.83 16 9 C -0.19 -4.19 9.04 -39.34 -0.36 -4.54 16 10 C 0.23 5.09 6.64 -83.62 -0.56 4.54 16 11 N -0.53 -13.05 5.42 -9.48 -0.05 -13.10 16 12 C -0.31 -7.78 9.55 -15.14 -0.14 -7.93 16 13 H 0.10 2.51 5.68 -52.48 -0.30 2.21 16 14 C 0.02 0.61 5.50 -17.45 -0.10 0.51 16 15 N -0.88 -23.26 13.05 55.49 0.72 -22.54 16 16 Si 0.93 19.65 29.55 -169.99 -5.02 14.62 16 17 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 21 H 0.02 0.32 7.11 -51.93 -0.37 -0.05 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 24 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 25 H 0.02 0.31 7.49 -51.93 -0.39 -0.08 16 26 H 0.10 1.67 7.05 -52.49 -0.37 1.30 16 27 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 28 H 0.13 2.77 5.96 -52.49 -0.31 2.46 16 29 H 0.41 10.56 7.16 -40.82 -0.29 10.27 16 30 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 275.32 15.07 4.15 4.15 Total: -1.00 -25.59 275.32 -7.94 -33.54 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -3.28 Total: 10.23 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -1.40 Total: -13.23 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.10 Total: -45.47 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 35 Polarization: -1.54 SS G_CDS: -2.29 Total: -3.83 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -25.59 -7.94 -33.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307105758.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.018 kcal (2) G-P(sol) polarization free energy of solvation -25.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds