Wall clock time and date at job start Tue Mar 31 2020 05:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47207 * 2 1 4 4 C 1.50701 * 109.47550 * 119.99642 * 2 1 3 5 5 H 1.07999 * 120.00132 * 119.99653 * 4 2 1 6 6 C 1.37873 * 119.99982 * 300.00487 * 4 2 1 7 7 N 1.31515 * 119.99927 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00074 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47330 * 89.99688 * 8 6 4 10 10 H 1.48504 * 109.47247 * 210.00053 * 8 6 4 11 11 H 1.48504 * 109.47185 * 329.99773 * 8 6 4 12 12 N 1.46904 * 109.47185 * 239.99918 * 2 1 3 13 13 C 1.46898 * 110.99955 * 85.00117 * 12 2 1 14 14 C 1.50705 * 109.47131 * 180.02562 * 13 12 2 15 15 C 1.38231 * 119.60504 * 94.99739 * 14 13 12 16 16 C 1.38615 * 119.16991 * 179.97438 * 15 14 13 17 17 C 1.38754 * 118.41127 * 359.97438 * 16 15 14 18 18 Br 1.89097 * 120.42578 * 179.97438 * 17 16 15 19 19 C 1.38274 * 119.14528 * 0.02562 * 17 16 15 20 20 N 1.31849 * 119.60323 * 274.97743 * 14 13 12 21 21 H 1.08998 * 109.46767 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47134 * 300.00084 * 1 2 3 23 23 H 1.08993 * 109.47408 * 60.00377 * 1 2 3 24 24 H 0.97004 * 119.99933 * 179.97438 * 7 6 4 25 25 H 1.00894 * 110.99854 * 321.04256 * 12 2 1 26 26 H 1.08995 * 109.47454 * 59.99490 * 13 12 2 27 27 H 1.09006 * 109.47068 * 299.99797 * 13 12 2 28 28 H 1.07998 * 120.41688 * 0.25018 * 15 14 13 29 29 H 1.07995 * 120.79077 * 180.02562 * 16 15 14 30 30 H 1.07996 * 119.62669 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3215 -1.1201 4.0079 9 1 3.6298 -0.5456 4.4123 10 1 1.3432 -0.9491 5.1121 11 1 2.4860 -2.5660 3.7120 12 7 2.0196 -0.6925 -1.1995 13 6 2.0825 0.2225 -2.3469 14 6 2.5873 -0.5219 -3.5561 15 6 1.6838 -1.0605 -4.4529 16 6 2.1581 -1.7430 -5.5622 17 6 3.5307 -1.8584 -5.7293 18 35 4.2398 -2.7780 -7.2217 19 6 4.3733 -1.2931 -4.7899 20 7 3.8856 -0.6513 -3.7461 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8899 24 1 0.7088 1.1614 3.4844 25 1 1.4496 -1.4979 -1.4100 26 1 2.7587 1.0462 -2.1182 27 1 1.0870 0.6163 -2.5526 28 1 0.6216 -0.9472 -4.2936 29 1 1.4756 -2.1738 -6.2797 30 1 5.4429 -1.3786 -4.9121 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308590215.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:50 Heat of formation + Delta-G solvation = 35.608992 kcal Electronic energy + Delta-G solvation = -14244.424533 eV Core-core repulsion = 11699.772162 eV Total energy + Delta-G solvation = -2544.652371 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.26911 -36.16508 -33.49375 -32.64415 -31.81018 -30.17112 -28.06144 -25.25929 -24.67669 -23.69911 -21.59408 -20.24367 -17.01115 -16.69216 -16.06779 -15.35629 -14.85903 -14.49449 -13.98673 -13.49146 -13.38561 -13.04304 -12.60612 -11.86831 -11.80786 -11.50690 -11.24446 -10.92697 -10.79256 -10.66181 -10.50757 -10.16134 -9.94947 -9.87539 -9.41035 -9.05027 -8.85029 -8.36332 -7.31175 -5.98990 -4.01980 0.81928 1.13355 1.37819 3.34240 3.40132 3.44518 3.62735 4.31616 4.45329 4.60566 4.66612 4.86085 5.24272 5.33009 5.43847 5.53900 5.69920 5.86492 6.02358 6.18003 6.49337 6.64313 6.78979 7.03209 7.29104 7.70093 7.86072 7.96097 8.23083 8.46028 8.56325 9.05004 9.63299 11.08172 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.043995 B = 0.003279 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.277844 B = 8536.957002 C = 8891.287405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.037 0.963 4 C -0.494 4.494 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.672 5.672 13 C 0.102 3.898 14 C 0.166 3.834 15 C -0.166 4.166 16 C -0.047 4.047 17 C -0.159 4.159 18 Br -0.047 7.047 19 C 0.135 3.865 20 N -0.454 5.454 21 H 0.028 0.972 22 H 0.091 0.909 23 H 0.005 0.995 24 H 0.260 0.740 25 H 0.325 0.675 26 H 0.087 0.913 27 H 0.040 0.960 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 -5.258 -20.905 21.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.055 0.945 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.302 5.302 13 C -0.028 4.028 14 C 0.027 3.973 15 C -0.187 4.187 16 C -0.074 4.074 17 C -0.240 4.240 18 Br 0.037 6.963 19 C -0.025 4.025 20 N -0.163 5.163 21 H 0.047 0.953 22 H 0.109 0.891 23 H 0.024 0.976 24 H 0.070 0.930 25 H 0.141 0.859 26 H 0.105 0.895 27 H 0.058 0.942 28 H 0.160 0.840 29 H 0.159 0.841 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.269 -5.014 -20.511 21.543 hybrid contribution -1.454 -0.550 0.296 1.582 sum 2.815 -5.564 -20.215 21.155 Atomic orbital electron populations 1.22449 1.00573 0.99292 1.00626 1.19225 0.89628 0.94596 0.86090 0.94540 1.21135 1.30182 1.12513 0.89468 0.91892 1.24938 0.95301 0.95221 0.99040 1.69879 1.37329 1.23223 1.23388 0.86488 0.78469 0.80027 0.82340 1.20707 1.21428 1.19941 1.60829 1.58310 1.08607 1.02483 1.20902 0.98655 0.95510 0.87699 1.21726 0.88461 0.92358 0.94708 1.22107 1.01802 0.99710 0.95081 1.21499 0.93449 0.95377 0.97089 1.22907 0.96652 1.06582 0.97885 1.96697 1.85677 1.75404 1.38476 1.22904 1.00202 0.91360 0.87993 1.67773 1.15496 1.14489 1.18507 0.95258 0.89082 0.97573 0.93048 0.85864 0.89460 0.94198 0.83996 0.84110 0.82118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 8.94 37.15 0.33 -3.62 16 2 C 0.21 5.24 2.57 -68.86 -0.18 5.06 16 3 H 0.04 0.99 7.80 -51.93 -0.40 0.58 16 4 C -0.49 -13.67 8.84 -34.44 -0.30 -13.98 16 5 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.51 11.32 55.43 0.63 -24.88 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.67 -14.14 6.22 -109.22 -0.68 -14.82 16 13 C 0.10 1.80 5.79 -4.97 -0.03 1.77 16 14 C 0.17 2.58 6.29 -82.58 -0.52 2.06 16 15 C -0.17 -2.08 9.72 -39.44 -0.38 -2.46 16 16 C -0.05 -0.52 9.94 -39.25 -0.39 -0.91 16 17 C -0.16 -1.87 6.25 -39.38 -0.25 -2.11 16 18 Br -0.05 -0.46 33.74 -68.01 -2.29 -2.76 16 19 C 0.14 1.80 10.95 -17.52 -0.19 1.60 16 20 N -0.45 -7.38 10.27 -9.45 -0.10 -7.48 16 21 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 22 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 23 H 0.01 0.11 7.45 -51.93 -0.39 -0.28 16 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.32 6.46 8.46 -39.30 -0.33 6.13 16 26 H 0.09 1.63 8.05 -51.93 -0.42 1.21 16 27 H 0.04 0.65 7.33 -51.93 -0.38 0.26 16 28 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 29 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 30 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 280.60 15.07 4.23 4.23 Total: -1.00 -29.03 280.60 -8.71 -37.74 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -3.47 Total: 2.58 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -2.00 Total: -11.15 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.15 Total: -47.19 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.29 Total: -2.76 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.03 -8.71 -37.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308590215.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.349 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds