Wall clock time and date at job start Tue Mar 31 2020 05:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47363 * 213.98874 * 3 2 1 5 5 C 1.36909 * 120.00202 * 272.86657 * 4 3 2 6 6 H 1.08006 * 119.99763 * 192.33955 * 5 4 3 7 7 C 1.39018 * 119.99814 * 12.34524 * 5 4 3 8 8 N 1.31378 * 120.00344 * 17.48855 * 7 5 4 9 9 Si 1.86806 * 119.99765 * 197.49335 * 7 5 4 10 10 H 1.48500 * 109.46900 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47151 * 119.99755 * 9 7 5 12 12 H 1.48499 * 109.46802 * 239.99742 * 9 7 5 13 13 C 1.34780 * 120.00070 * 92.86549 * 4 3 2 14 14 O 1.21620 * 120.00223 * 185.04057 * 13 4 3 15 15 C 1.47467 * 119.99919 * 5.02891 * 13 4 3 16 16 C 1.39811 * 120.13754 * 304.69265 * 15 13 4 17 17 C 1.37910 * 119.86778 * 180.02562 * 16 15 13 18 18 F 1.35104 * 119.92098 * 179.97438 * 17 16 15 19 19 C 1.38962 * 120.15210 * 359.73248 * 17 16 15 20 20 F 1.35100 * 119.86006 * 180.29699 * 19 17 16 21 21 C 1.38467 * 120.27439 * 0.54410 * 19 17 16 22 22 C 1.38187 * 120.12962 * 359.45371 * 21 19 17 23 23 F 1.35093 * 120.07650 * 180.29950 * 22 21 19 24 24 H 1.09000 * 109.47435 * 93.99240 * 3 2 1 25 25 H 1.09002 * 109.47330 * 333.99153 * 3 2 1 26 26 H 0.96999 * 120.00328 * 180.02562 * 8 7 5 27 27 H 1.07993 * 120.06893 * 359.97438 * 16 15 13 28 28 H 1.07998 * 119.93231 * 179.72641 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0958 1.1461 0.7721 5 6 3.2676 2.3597 0.1621 6 1 3.8088 3.1461 0.6672 7 6 2.7453 2.5797 -1.1073 8 7 1.8142 1.7834 -1.5817 9 14 3.3675 4.0075 -2.1387 10 1 4.4086 4.7481 -1.3817 11 1 3.9490 3.4886 -3.4027 12 1 2.2393 4.9210 -2.4511 13 6 3.3755 1.0052 2.0830 14 8 3.6923 1.9751 2.7449 15 6 3.2972 -0.3250 2.7148 16 6 2.1182 -1.0721 2.6342 17 6 2.0510 -2.3152 3.2276 18 9 0.9120 -3.0379 3.1508 19 6 3.1535 -2.8283 3.8999 20 9 3.0831 -4.0493 4.4739 21 6 4.3224 -2.0912 3.9884 22 6 4.4025 -0.8444 3.3981 23 9 5.5454 -0.1287 3.4799 24 1 2.9713 0.0724 -1.0252 25 1 2.9717 -0.9228 0.4506 26 1 1.4501 1.9367 -2.4675 27 1 1.2616 -0.6762 2.1090 28 1 5.1745 -2.4935 4.5161 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334147017.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:42 Heat of formation + Delta-G solvation = -90.655247 kcal Electronic energy + Delta-G solvation = -22015.519679 eV Core-core repulsion = 18004.562780 eV Total energy + Delta-G solvation = -4010.956899 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.051 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.56384 -48.86435 -48.61822 -39.71806 -37.76221 -35.99288 -34.45722 -32.29461 -31.03416 -30.03941 -27.67050 -25.52433 -23.75167 -23.00782 -20.20391 -18.32990 -18.21339 -17.96903 -17.39287 -16.61774 -16.46759 -16.27394 -15.60250 -15.33925 -15.02171 -14.83432 -14.63810 -14.46558 -14.32520 -13.72039 -13.66145 -13.07299 -12.72046 -12.31866 -12.18848 -11.80516 -11.67967 -11.56588 -11.35642 -11.28801 -10.68724 -10.54232 -10.47443 -9.50118 -9.26989 -8.98754 -8.58497 -8.34580 -6.72106 -4.20055 0.53719 0.74921 2.80759 3.04422 3.11779 3.17790 3.43105 3.52435 3.54250 3.86250 3.95941 3.98652 4.25519 4.37200 4.46722 4.70609 4.87097 5.01610 5.19275 5.39865 5.57717 5.64244 5.84247 5.87604 5.93571 6.39430 6.55555 7.25261 7.58636 8.03569 8.65514 8.74622 8.92177 9.43331 10.31039 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.022967 B = 0.006168 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.830532 B = 4538.636260 C = 5480.000623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.251 3.749 3 C 0.216 3.784 4 N -0.423 5.423 5 C -0.307 4.307 6 H 0.117 0.883 7 C 0.033 3.967 8 N -0.874 5.874 9 Si 0.938 3.062 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.280 1.280 13 C 0.480 3.520 14 O -0.555 6.555 15 C -0.110 4.110 16 C -0.083 4.083 17 C 0.059 3.941 18 F -0.123 7.123 19 C 0.100 3.900 20 F -0.122 7.122 21 C -0.167 4.167 22 C 0.159 3.841 23 F -0.111 7.111 24 H 0.132 0.868 25 H 0.082 0.918 26 H 0.279 0.721 27 H 0.157 0.843 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.143 -9.283 4.450 11.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.067 4.067 3 C 0.089 3.911 4 N -0.141 5.141 5 C -0.433 4.433 6 H 0.134 0.866 7 C -0.172 4.172 8 N -0.513 5.513 9 Si 0.763 3.237 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.206 1.206 13 C 0.268 3.732 14 O -0.438 6.438 15 C -0.114 4.114 16 C -0.103 4.103 17 C 0.039 3.961 18 F -0.101 7.101 19 C 0.079 3.921 20 F -0.100 7.100 21 C -0.187 4.187 22 C 0.138 3.862 23 F -0.089 7.089 24 H 0.150 0.850 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.174 0.826 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.527 -8.810 4.581 10.537 hybrid contribution 0.409 0.379 -0.603 0.821 sum 3.936 -8.431 3.978 10.119 Atomic orbital electron populations 1.80935 1.13249 1.10287 1.10437 1.28888 0.95071 0.91358 0.91385 1.18912 0.82230 0.88968 1.01002 1.43605 1.54635 1.09723 1.06119 1.19940 1.33478 0.91145 0.98768 0.86574 1.25387 0.94530 0.99387 0.97847 1.69644 1.23326 1.39100 1.19235 0.85664 0.78958 0.79907 0.79123 1.18824 1.20167 1.20607 1.17375 0.86889 0.86683 0.82239 1.90714 1.52868 1.38779 1.61438 1.20293 0.92849 0.97222 1.01082 1.21333 0.98983 0.91585 0.98382 1.17427 0.82976 0.92133 1.03572 1.91558 1.47192 1.76684 1.94703 1.17278 0.93843 0.82531 0.98464 1.91546 1.96654 1.39691 1.82143 1.20813 0.98756 0.94335 1.04783 1.17202 0.82524 0.89194 0.97287 1.91594 1.46419 1.77030 1.93835 0.85046 0.89988 0.90998 0.82579 0.82092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.72 18.51 42.15 0.78 -9.94 15 2 C 0.25 5.32 10.51 -20.76 -0.22 5.10 15 3 C 0.22 4.14 4.76 -6.83 -0.03 4.11 15 4 N -0.42 -9.47 2.58 -119.14 -0.31 -9.77 15 5 C -0.31 -7.49 9.41 -15.00 -0.14 -7.63 15 6 H 0.12 2.99 7.32 -52.48 -0.38 2.61 15 7 C 0.03 0.76 5.05 -17.46 -0.09 0.67 15 8 N -0.87 -20.63 8.64 55.50 0.48 -20.16 15 9 Si 0.94 18.67 29.59 -169.99 -5.03 13.64 15 10 H -0.26 -5.28 7.11 56.52 0.40 -4.88 15 11 H -0.28 -5.35 7.11 56.52 0.40 -4.95 15 12 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 13 C 0.48 10.63 6.82 -12.50 -0.09 10.55 15 14 O -0.56 -14.28 16.54 5.26 0.09 -14.19 15 15 C -0.11 -1.93 4.68 -104.91 -0.49 -2.42 15 16 C -0.08 -1.34 7.70 -39.11 -0.30 -1.64 15 17 C 0.06 0.86 7.29 -39.43 -0.29 0.57 15 18 F -0.12 -1.85 17.17 2.25 0.04 -1.81 15 19 C 0.10 1.28 7.31 -39.23 -0.29 0.99 15 20 F -0.12 -1.53 17.17 2.25 0.04 -1.49 15 21 C -0.17 -2.01 9.99 -39.52 -0.39 -2.41 15 22 C 0.16 2.43 7.27 -38.96 -0.28 2.14 15 23 F -0.11 -1.84 16.68 2.25 0.04 -1.80 15 24 H 0.13 2.53 6.55 -51.93 -0.34 2.19 15 25 H 0.08 1.27 5.89 -51.93 -0.31 0.96 15 26 H 0.28 6.37 8.31 -40.82 -0.34 6.03 15 27 H 0.16 2.76 5.32 -52.49 -0.28 2.48 15 28 H 0.16 1.44 8.06 -52.49 -0.42 1.02 15 LS Contribution 270.46 15.07 4.08 4.08 Total: -1.00 -28.00 270.46 -3.28 -31.28 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -0.87 Total: 0.12 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -2.61 Total: 10.04 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.95 Total: -39.86 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.09 Total: -14.19 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.11 Total: -5.11 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.00 -3.28 -31.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334147017.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.377 kcal (2) G-P(sol) polarization free energy of solvation -28.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds