Wall clock time and date at job start Tue Mar 31 2020 05:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86794 * 120.00555 * 2 1 4 4 H 1.48501 * 109.47188 * 270.00117 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99696 * 3 2 1 6 6 H 1.48490 * 109.47554 * 149.99756 * 3 2 1 7 7 C 1.40153 * 119.99556 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00176 * 179.97438 * 7 2 1 9 9 C 1.41677 * 120.00097 * 0.02562 * 7 2 1 10 10 O 1.21763 * 119.99911 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00031 * 179.97438 * 9 7 2 12 12 C 1.38010 * 119.99640 * 180.27799 * 11 9 7 13 13 N 1.29003 * 124.82758 * 359.41404 * 12 11 9 14 14 C 1.34527 * 117.92978 * 179.77616 * 13 12 11 15 15 C 1.39980 * 112.89089 * 0.50673 * 14 13 12 16 16 C 1.39240 * 120.43930 * 179.72334 * 15 14 13 17 17 C 1.37779 * 120.27296 * 0.02562 * 16 15 14 18 18 C 1.38924 * 120.01530 * 359.95341 * 17 16 15 19 19 F 1.35098 * 119.72185 * 180.02562 * 18 17 16 20 20 C 1.37513 * 120.55034 * 0.02708 * 18 17 16 21 21 F 1.35103 * 119.82220 * 179.97438 * 20 18 17 22 22 S 1.75814 * 124.81929 * 179.72209 * 12 11 9 23 23 H 0.97005 * 119.99561 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 25 25 H 1.07998 * 119.86298 * 180.02562 * 16 15 14 26 26 H 1.07999 * 119.98742 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 2.4879 2.0463 -1.4001 5 1 1.4379 2.6526 0.7000 6 1 3.5378 1.4400 0.7000 7 6 2.0069 -1.2138 0.0005 8 1 3.0869 -1.2139 0.0001 9 6 1.2985 -2.4407 0.0005 10 8 0.0808 -2.4406 0.0005 11 7 1.9723 -3.6080 0.0005 12 6 1.2821 -4.8031 -0.0053 13 7 -0.0034 -4.9115 -0.0001 14 6 -0.5314 -6.1488 -0.0116 15 6 0.4410 -7.1557 -0.0166 16 6 0.0674 -8.4971 -0.0226 17 6 -1.2652 -8.8469 -0.0243 18 6 -2.2429 -7.8599 -0.0190 19 9 -3.5478 -8.2097 -0.0202 20 6 -1.8934 -6.5300 -0.0126 21 9 -2.8562 -5.5823 -0.0080 22 16 2.0299 -6.3942 -0.0130 23 1 -0.4850 0.8401 -0.0004 24 1 2.9423 -3.6080 0.0002 25 1 0.8254 -9.2664 -0.0260 26 1 -1.5498 -9.8888 -0.0295 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334569153.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:59 Heat of formation + Delta-G solvation = -59.293180 kcal Electronic energy + Delta-G solvation = -18973.568528 eV Core-core repulsion = 15394.351672 eV Total energy + Delta-G solvation = -3579.216856 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.017 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.25683 -48.20702 -39.91327 -38.24270 -35.99789 -33.54282 -32.55098 -30.28750 -29.09198 -27.06587 -24.35257 -22.85910 -22.25662 -19.73947 -19.10868 -17.89783 -17.35088 -16.87798 -16.20836 -16.06218 -15.65664 -15.50112 -14.92825 -14.84690 -14.37880 -14.19897 -14.05271 -13.13039 -12.98754 -12.85131 -12.74826 -11.64316 -11.51856 -11.50127 -11.21063 -11.11364 -10.83719 -10.45465 -9.70618 -9.59311 -9.20508 -9.03802 -7.93707 -7.81088 -7.55712 -6.51502 -5.08552 0.57712 0.86691 1.19310 1.71776 2.55217 2.98792 3.05226 3.09312 3.48840 3.58719 3.86736 4.09080 4.30300 4.45465 4.54548 4.81022 5.08839 5.42958 5.53314 5.58226 5.82741 5.95189 6.04234 6.68902 7.03176 7.10102 7.53270 7.79001 8.14362 8.62601 8.94478 10.20507 10.38677 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.028672 B = 0.004707 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.312921 B = 5947.722498 C = 6914.177525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.084 3.916 3 Si 0.920 3.080 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.075 0.925 9 C 0.523 3.477 10 O -0.507 6.507 11 N -0.631 5.631 12 C 0.398 3.602 13 N -0.483 5.483 14 C 0.136 3.864 15 C -0.191 4.191 16 C -0.036 4.036 17 C -0.146 4.146 18 C 0.084 3.916 19 F -0.128 7.128 20 C 0.094 3.906 21 F -0.113 7.113 22 S 0.018 5.982 23 H 0.277 0.723 24 H 0.407 0.593 25 H 0.141 0.859 26 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.136 -13.898 -0.062 14.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.140 4.140 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.564 4.564 8 H 0.093 0.907 9 C 0.330 3.670 10 O -0.383 6.383 11 N -0.280 5.280 12 C 0.022 3.978 13 N -0.206 5.206 14 C 0.010 3.990 15 C -0.312 4.312 16 C -0.059 4.059 17 C -0.168 4.168 18 C 0.061 3.939 19 F -0.106 7.106 20 C 0.070 3.930 21 F -0.091 7.091 22 S 0.268 5.732 23 H 0.088 0.912 24 H 0.243 0.757 25 H 0.159 0.841 26 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.809 -13.346 -0.045 13.879 hybrid contribution -0.273 0.741 -0.014 0.790 sum 3.536 -12.604 -0.059 13.091 Atomic orbital electron populations 1.69997 1.07348 1.28471 1.30815 1.25793 0.94768 1.00851 0.92574 0.86161 0.80061 0.80271 0.79187 1.19354 1.20076 1.18550 1.19956 0.94468 0.89129 1.52869 0.90671 1.17523 0.88341 0.81170 0.79983 1.90834 1.12725 1.83467 1.51255 1.44821 1.09966 1.02097 1.71090 1.24646 0.88921 0.90748 0.93443 1.66583 1.08417 1.19685 1.25898 1.18850 0.92582 0.87309 1.00214 1.23275 0.95431 0.98149 1.14365 1.20052 0.95558 0.92592 0.97704 1.20731 0.91069 0.99023 1.06021 1.17112 0.79211 0.90853 1.06759 1.91517 1.32678 1.92332 1.94102 1.16986 0.83530 0.84495 1.07964 1.91561 1.60922 1.63125 1.93511 1.84754 1.06271 1.01854 1.80357 0.91165 0.75698 0.84135 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.00 11.73 55.56 0.65 -20.35 15 2 C 0.08 2.19 5.50 -17.35 -0.10 2.09 15 3 Si 0.92 18.58 29.56 -169.99 -5.02 13.56 15 4 H -0.27 -5.32 7.11 56.52 0.40 -4.91 15 5 H -0.28 -5.51 7.11 56.52 0.40 -5.10 15 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 15 7 C -0.53 -13.68 9.31 -37.55 -0.35 -14.03 15 8 H 0.08 1.70 7.85 -52.49 -0.41 1.29 15 9 C 0.52 14.18 7.53 -14.95 -0.11 14.07 15 10 O -0.51 -16.12 13.48 5.13 0.07 -16.05 15 11 N -0.63 -13.52 5.36 -14.87 -0.08 -13.60 15 12 C 0.40 8.31 8.18 -88.82 -0.73 7.59 15 13 N -0.48 -11.55 8.61 -11.06 -0.10 -11.65 15 14 C 0.14 2.74 6.93 -84.82 -0.59 2.15 15 15 C -0.19 -3.04 6.52 -38.56 -0.25 -3.29 15 16 C -0.04 -0.43 10.05 -39.38 -0.40 -0.82 15 17 C -0.15 -1.69 10.02 -39.50 -0.40 -2.08 15 18 C 0.08 1.27 7.26 -39.59 -0.29 0.98 15 19 F -0.13 -1.91 17.14 2.25 0.04 -1.88 15 20 C 0.09 1.80 7.36 -38.63 -0.28 1.51 15 21 F -0.11 -2.45 17.15 2.25 0.04 -2.41 15 22 S 0.02 0.27 23.39 -107.50 -2.51 -2.25 15 23 H 0.28 7.09 8.29 -40.82 -0.34 6.76 15 24 H 0.41 6.88 8.78 -40.82 -0.36 6.52 15 25 H 0.14 1.16 8.06 -52.49 -0.42 0.73 15 26 H 0.15 1.19 8.06 -52.49 -0.42 0.76 15 LS Contribution 267.43 15.07 4.03 4.03 Total: -1.00 -33.91 267.43 -7.12 -41.03 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -0.75 Total: 1.39 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -3.49 Total: 8.17 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.48 Total: -45.59 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.07 Total: -16.05 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.08 Total: -4.29 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -2.51 Total: -2.25 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.91 -7.12 -41.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334569153.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.265 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds