Wall clock time and date at job start Tue Mar 31 2020 05:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31388 * 1 3 3 Si 1.86798 * 120.00182 * 2 1 4 4 H 1.48501 * 109.47128 * 269.99870 * 3 2 1 5 5 H 1.48499 * 109.46906 * 30.00225 * 3 2 1 6 6 H 1.48495 * 109.46923 * 150.00032 * 3 2 1 7 7 C 1.38912 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99847 * 170.54935 * 7 2 1 9 9 N 1.37345 * 120.00106 * 350.83062 * 7 2 1 10 10 C 1.35488 * 127.83107 * 319.30682 * 9 7 2 11 11 O 1.21574 * 126.86082 * 0.02562 * 10 9 7 12 12 O 1.34275 * 106.27149 * 179.91209 * 10 9 7 13 13 N 1.21012 * 110.93472 * 0.37847 * 12 10 9 14 14 C 1.29998 * 111.54067 * 359.75948 * 13 12 10 15 15 C 1.47998 * 126.53807 * 180.02562 * 14 13 12 16 16 C 1.39530 * 120.10074 * 172.11452 * 15 14 13 17 17 C 1.37914 * 119.90897 * 179.69638 * 16 15 14 18 18 C 1.38580 * 120.12394 * 0.59527 * 17 16 15 19 19 F 1.35096 * 119.89150 * 179.69774 * 18 17 16 20 20 C 1.38674 * 120.20973 * 359.68099 * 18 17 16 21 21 Cl 1.73604 * 119.95806 * 180.02562 * 20 18 17 22 22 C 1.38047 * 120.08480 * 0.02562 * 20 18 17 23 23 H 0.96998 * 120.00192 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.04038 * 359.97438 * 16 15 14 25 25 H 1.07999 * 119.93227 * 180.29685 * 17 16 15 26 26 H 1.07998 * 120.05837 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4454 2.6526 0.7001 6 1 3.5454 1.4400 0.7000 7 6 2.0084 -1.2030 0.0005 8 1 3.0774 -1.2095 -0.1530 9 7 1.3348 -2.3848 0.1906 10 6 0.3254 -2.6356 1.0589 11 8 -0.1770 -1.8506 1.8395 12 8 -0.0108 -3.9236 0.8830 13 7 0.6804 -4.4389 0.0338 14 6 1.5382 -3.5958 -0.4597 15 6 2.5397 -3.8730 -1.5134 16 6 3.2858 -2.8292 -2.0617 17 6 4.2225 -3.0928 -3.0390 18 6 4.4152 -4.3904 -3.4858 19 9 5.3297 -4.6424 -4.4476 20 6 3.6724 -5.4309 -2.9485 21 17 3.9195 -7.0540 -3.5126 22 6 2.7367 -5.1777 -1.9656 23 1 -0.4850 0.8400 -0.0004 24 1 3.1331 -1.8168 -1.7180 25 1 4.8036 -2.2858 -3.4602 26 1 2.1582 -5.9882 -1.5477 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336393386.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:01 Heat of formation + Delta-G solvation = -4.015711 kcal Electronic energy + Delta-G solvation = -19533.958399 eV Core-core repulsion = 15942.722058 eV Total energy + Delta-G solvation = -3591.236341 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.015 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.96753 -43.91540 -39.07530 -37.08209 -36.59736 -35.43902 -32.88788 -31.42028 -30.69662 -29.42801 -26.55197 -23.98962 -23.19871 -22.33014 -20.96597 -18.45589 -17.72698 -17.26019 -17.05217 -16.42148 -15.75371 -15.55739 -15.20135 -14.68345 -14.42672 -13.89558 -13.76177 -13.36014 -13.13095 -12.73440 -12.60038 -12.12144 -12.03300 -11.56786 -11.48947 -11.29432 -11.10881 -10.94526 -10.67609 -10.37471 -9.41003 -9.15187 -8.96111 -8.55095 -7.63153 -6.81584 -4.73360 0.72779 1.09428 1.95264 2.60963 2.92772 2.97924 3.05010 3.35736 3.64562 3.81239 3.95067 4.05414 4.24591 4.59515 4.71329 4.98875 5.15238 5.24509 5.60377 5.74685 5.91127 5.97820 6.23054 6.51197 6.58461 6.73470 6.95220 7.79226 8.23010 8.59025 9.29308 9.37237 10.23440 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.005960 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.049008 B = 4696.578216 C = 5955.972084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.059 3.941 3 Si 0.936 3.064 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.354 4.354 8 H 0.116 0.884 9 N -0.359 5.359 10 C 0.526 3.474 11 O -0.482 6.482 12 O -0.025 6.025 13 N -0.379 5.379 14 C 0.217 3.783 15 C 0.007 3.993 16 C -0.063 4.063 17 C -0.144 4.144 18 C 0.110 3.890 19 F -0.130 7.130 20 C -0.079 4.079 21 Cl -0.055 7.055 22 C -0.052 4.052 23 H 0.283 0.717 24 H 0.177 0.823 25 H 0.149 0.851 26 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.740 -5.183 -7.329 12.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.158 4.158 3 Si 0.760 3.240 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.479 4.479 8 H 0.133 0.867 9 N -0.081 5.081 10 C 0.278 3.722 11 O -0.363 6.363 12 O -0.069 6.069 13 N -0.123 5.123 14 C -0.046 4.046 15 C 0.005 3.995 16 C -0.082 4.082 17 C -0.163 4.163 18 C 0.090 3.910 19 F -0.108 7.108 20 C -0.107 4.107 21 Cl -0.026 7.026 22 C -0.073 4.073 23 H 0.094 0.906 24 H 0.194 0.806 25 H 0.167 0.833 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.880 -5.739 -6.939 11.966 hybrid contribution 0.562 1.307 -0.187 1.435 sum 8.442 -4.432 -7.126 11.903 Atomic orbital electron populations 1.69875 1.06621 1.29619 1.37163 1.25671 0.95585 1.00645 0.93867 0.85794 0.79591 0.79668 0.78981 1.19373 1.19958 1.18508 1.19300 0.92224 0.79607 1.56816 0.86676 1.42226 1.29938 1.08650 1.27282 1.20512 0.84871 0.82170 0.84608 1.90967 1.59251 1.46453 1.39607 1.85318 1.49922 1.24876 1.46773 1.74010 1.07889 1.21502 1.08894 1.22332 0.98140 0.86946 0.97210 1.17272 0.94959 0.92722 0.94565 1.22143 0.91282 1.02167 0.92613 1.21109 1.01190 0.94437 0.99577 1.17577 0.90397 0.93159 0.89910 1.91516 1.63891 1.94907 1.60534 1.20677 1.02122 0.86143 1.01723 1.98371 1.96187 1.19578 1.88467 1.20970 0.95367 0.97049 0.93913 0.90644 0.80613 0.83332 0.83028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.44 11.46 55.49 0.64 -20.81 15 2 C 0.06 1.41 5.20 -17.49 -0.09 1.32 15 3 Si 0.94 17.90 29.56 -169.99 -5.03 12.87 15 4 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 6 H -0.26 -4.81 7.11 56.52 0.40 -4.40 15 7 C -0.35 -8.31 7.96 -14.83 -0.12 -8.43 15 8 H 0.12 2.36 6.26 -52.49 -0.33 2.03 15 9 N -0.36 -8.79 2.85 -64.23 -0.18 -8.98 15 10 C 0.53 14.03 8.56 54.35 0.47 14.50 15 11 O -0.48 -14.23 16.18 -18.86 -0.31 -14.54 15 12 O -0.03 -0.61 11.25 -7.64 -0.09 -0.70 15 13 N -0.38 -8.37 11.74 32.16 0.38 -8.00 15 14 C 0.22 4.64 7.76 -153.40 -1.19 3.45 15 15 C 0.01 0.12 5.87 -104.95 -0.62 -0.49 15 16 C -0.06 -0.97 9.24 -39.22 -0.36 -1.33 15 17 C -0.14 -1.85 10.01 -39.57 -0.40 -2.25 15 18 C 0.11 1.49 7.28 -39.29 -0.29 1.20 15 19 F -0.13 -1.72 16.83 2.25 0.04 -1.68 15 20 C -0.08 -1.10 6.32 -39.49 -0.25 -1.35 15 21 Cl -0.05 -0.69 28.61 -51.86 -1.48 -2.18 15 22 C -0.05 -0.79 9.47 -39.19 -0.37 -1.16 15 23 H 0.28 7.04 8.31 -40.82 -0.34 6.71 15 24 H 0.18 2.86 4.52 -52.49 -0.24 2.63 15 25 H 0.15 1.49 8.06 -52.49 -0.42 1.07 15 26 H 0.15 2.20 7.89 -52.49 -0.41 1.79 15 LS Contribution 262.50 15.07 3.96 3.96 Total: -1.00 -28.41 262.50 -5.83 -34.24 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -0.54 Total: 0.35 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -3.22 Total: 5.46 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.83 Total: -37.78 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.39 Total: -15.24 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.48 Total: -2.18 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.41 -5.83 -34.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336393386.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.224 kcal (2) G-P(sol) polarization free energy of solvation -28.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds