Wall clock time and date at job start Tue Mar 31 2020 05:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00147 * 2 1 4 4 H 1.48498 * 109.46963 * 270.00345 * 3 2 1 5 5 H 1.48496 * 109.46932 * 30.00197 * 3 2 1 6 6 H 1.48499 * 109.46973 * 149.99898 * 3 2 1 7 7 C 1.37875 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99888 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00278 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47504 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.47537 * 179.97438 * 10 9 7 12 12 C 1.46903 * 111.00544 * 179.97438 * 11 10 9 13 13 C 1.50690 * 109.47301 * 180.02562 * 12 11 10 14 14 C 1.38233 * 119.60853 * 95.00118 * 13 12 11 15 15 C 1.38613 * 119.17625 * 179.97438 * 14 13 12 16 16 C 1.38752 * 118.40879 * 0.25567 * 15 14 13 17 17 Br 1.89107 * 120.42763 * 179.75035 * 16 15 14 18 18 C 1.38281 * 119.14439 * 359.51903 * 16 15 14 19 19 N 1.31858 * 119.60924 * 275.02542 * 13 12 11 20 20 H 0.97006 * 119.99790 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46908 * 59.99500 * 9 7 2 22 22 H 1.08998 * 109.46804 * 299.99932 * 9 7 2 23 23 H 1.09001 * 109.47274 * 59.99935 * 10 9 7 24 24 H 1.09006 * 109.46951 * 300.00148 * 10 9 7 25 25 H 1.00905 * 111.00055 * 303.95890 * 11 10 9 26 26 H 1.09001 * 109.46417 * 59.99914 * 12 11 10 27 27 H 1.08995 * 109.46546 * 300.00519 * 12 11 10 28 28 H 1.08002 * 120.41515 * 0.02562 * 14 13 12 29 29 H 1.08002 * 120.79267 * 179.97438 * 15 14 13 30 30 H 1.08007 * 119.62545 * 180.20793 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4904 -2.6367 -0.0022 12 6 6.0169 -4.0081 -0.0015 13 6 7.5233 -3.9679 -0.0021 14 6 8.2093 -4.0537 1.1949 15 6 9.5949 -4.0163 1.1839 16 6 10.2421 -3.8881 -0.0367 17 35 12.1303 -3.8241 -0.1174 18 6 9.4887 -3.8125 -1.1938 19 7 8.1714 -3.8509 -1.1444 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6804 0.8888 22 1 3.8745 -0.6801 -0.8911 23 1 3.6578 -3.1506 -0.8907 24 1 3.6584 -3.1502 0.8893 25 1 5.8515 -2.1108 -0.7840 26 1 5.6666 -4.5321 -0.8908 27 1 5.6680 -4.5307 0.8892 28 1 7.6724 -4.1494 2.1272 29 1 10.1570 -4.0809 2.1038 30 1 9.9845 -3.7160 -2.1484 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336685879.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:55 Heat of formation + Delta-G solvation = 29.699276 kcal Electronic energy + Delta-G solvation = -13844.864900 eV Core-core repulsion = 11299.956264 eV Total energy + Delta-G solvation = -2544.908636 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.51061 -36.26693 -33.62806 -32.89080 -32.21189 -30.72350 -29.17382 -25.92713 -23.98888 -23.39336 -21.76444 -20.42640 -17.18127 -16.79241 -16.65810 -15.71521 -15.21705 -14.72393 -14.25261 -13.91437 -13.56208 -13.41252 -12.80885 -12.59027 -12.36407 -11.79272 -11.52686 -11.36280 -11.01661 -10.79049 -10.11141 -10.06296 -9.97058 -9.82997 -9.68142 -9.25438 -9.06100 -8.54131 -8.04964 -6.04947 -4.03566 0.59110 0.92489 1.20742 3.32607 3.36402 3.39993 3.45832 4.02482 4.39353 4.46202 4.46284 4.66312 4.81240 5.02063 5.29721 5.34994 5.41005 5.58482 5.71083 5.84600 6.12976 6.21804 6.26340 6.73131 7.05296 7.34259 7.52298 7.62424 7.69804 7.84837 8.51863 8.98851 9.57388 11.08309 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.042239 B = 0.002912 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.739489 B = 9613.297993 C = 9973.611300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.688 5.688 12 C 0.103 3.897 13 C 0.156 3.844 14 C -0.146 4.146 15 C -0.047 4.047 16 C -0.154 4.154 17 Br -0.041 7.041 18 C 0.134 3.866 19 N -0.472 5.472 20 H 0.263 0.737 21 H 0.025 0.975 22 H 0.009 0.991 23 H 0.026 0.974 24 H 0.067 0.933 25 H 0.341 0.659 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.147 0.853 29 H 0.144 0.856 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.561 -10.350 1.020 28.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.320 5.320 12 C -0.027 4.027 13 C 0.018 3.982 14 C -0.167 4.167 15 C -0.075 4.075 16 C -0.236 4.236 17 Br 0.043 6.957 18 C -0.025 4.025 19 N -0.181 5.181 20 H 0.073 0.927 21 H 0.044 0.956 22 H 0.028 0.972 23 H 0.044 0.956 24 H 0.086 0.914 25 H 0.159 0.841 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.165 0.835 29 H 0.162 0.838 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 26.641 -10.092 0.903 28.503 hybrid contribution 0.296 0.601 -0.127 0.682 sum 26.938 -9.491 0.776 28.571 Atomic orbital electron populations 1.69914 1.06325 1.26950 1.51061 1.25002 0.94731 0.99220 0.94442 0.86752 0.80469 0.83437 0.78512 1.20353 1.21405 1.18789 1.21056 0.89294 0.94558 1.51126 0.91039 1.19547 0.96709 0.91687 0.96818 1.22002 0.83230 1.00367 0.99816 1.60689 1.10373 1.10819 1.50073 1.20871 0.86703 0.92865 1.02242 1.21526 0.97178 0.91398 0.88121 1.22069 0.93707 1.00812 1.00094 1.21586 0.94681 0.94268 0.96949 1.22929 0.91769 1.11107 0.97751 1.96733 1.02228 1.97664 1.99088 1.22811 0.89184 0.93379 0.97145 1.67686 1.08763 1.12239 1.29449 0.92700 0.95628 0.97222 0.95603 0.91430 0.84146 0.93187 0.89226 0.83482 0.83833 0.81984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.90 9.66 -34.44 -0.33 -15.24 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.35 16 10 C 0.07 1.45 5.62 -3.83 -0.02 1.43 16 11 N -0.69 -11.47 6.49 -115.07 -0.75 -12.21 16 12 C 0.10 1.39 5.99 -4.98 -0.03 1.36 16 13 C 0.16 1.97 6.29 -82.59 -0.52 1.45 16 14 C -0.15 -1.53 9.72 -39.44 -0.38 -1.92 16 15 C -0.05 -0.45 9.94 -39.25 -0.39 -0.84 16 16 C -0.15 -1.53 6.25 -39.38 -0.25 -1.78 16 17 Br -0.04 -0.35 33.74 -68.01 -2.29 -2.65 16 18 C 0.13 1.47 10.95 -17.52 -0.19 1.28 16 19 N -0.47 -6.19 10.27 -9.45 -0.10 -6.29 16 20 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 21 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 22 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.34 5.74 8.72 -39.29 -0.34 5.40 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.09 1.07 8.04 -51.93 -0.42 0.66 16 28 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.16 1.43 8.06 -52.48 -0.42 1.00 16 LS Contribution 283.31 15.07 4.27 4.27 Total: -1.00 -30.97 283.31 -8.75 -39.72 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -3.65 Total: -0.19 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -2.33 Total: -12.73 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.07 Total: -45.70 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -2.29 Total: -2.65 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.97 -8.75 -39.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336685879.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.420 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds