Wall clock time and date at job start Tue Mar 31 2020 05:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86797 * 119.99612 * 2 1 4 4 H 1.48500 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47195 * 300.00170 * 3 2 1 6 6 H 1.48500 * 109.47473 * 60.00114 * 3 2 1 7 7 C 1.38794 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99678 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00132 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00077 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47323 * 180.02562 * 10 9 7 12 12 O 1.21307 * 119.99899 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00303 * 179.97438 * 11 10 9 14 14 C 1.39795 * 120.00478 * 179.97438 * 13 11 10 15 15 S 1.76199 * 126.06614 * 0.02562 * 14 13 11 16 16 C 1.70950 * 90.32930 * 179.97438 * 15 14 13 17 17 N 1.28928 * 110.31218 * 0.02562 * 16 15 14 18 18 C 1.31862 * 117.19167 * 359.97438 * 17 16 15 19 19 C 1.50703 * 122.84637 * 179.97438 * 18 17 16 20 20 C 1.52998 * 117.49848 * 8.63994 * 19 18 17 21 21 C 1.52997 * 60.00336 * 252.51615 * 20 19 18 22 22 H 0.96997 * 120.00358 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47324 * 59.99692 * 10 9 7 24 24 H 1.08997 * 109.46655 * 299.99946 * 10 9 7 25 25 H 0.97004 * 120.00209 * 359.97438 * 13 11 10 26 26 H 1.07997 * 124.84525 * 180.02562 * 16 15 14 27 27 H 1.08995 * 115.55312 * 154.35354 * 19 18 17 28 28 H 1.09005 * 117.50242 * 0.02562 * 20 19 18 29 29 H 1.08998 * 117.49907 * 145.02607 * 20 19 18 30 30 H 1.09003 * 117.49788 * 252.51398 * 21 20 19 31 31 H 1.08997 * 117.52249 * 107.48226 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9877 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8444 -6.3430 -0.0018 14 6 2.3543 -7.6522 -0.0019 15 16 0.6567 -8.1244 -0.0018 16 6 1.1054 -9.7739 -0.0027 17 7 2.3895 -9.8885 -0.0024 18 6 3.0940 -8.7738 -0.0021 19 6 4.6009 -8.7592 -0.0012 20 6 5.3204 -10.0940 -0.2045 21 6 5.3131 -9.4313 1.1744 22 1 -0.4850 0.8400 0.0004 23 1 3.1247 -3.7313 0.8894 24 1 3.1246 -3.7312 -0.8905 25 1 3.8012 -6.1834 -0.0022 26 1 0.4120 -10.6020 -0.0033 27 1 5.0627 -7.8682 -0.4266 28 1 4.7039 -10.9828 -0.3394 29 1 6.2558 -10.0814 -0.7640 30 1 6.2437 -8.9826 1.5221 31 1 4.6918 -9.8836 1.9473 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342875869.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:04 Heat of formation + Delta-G solvation = 34.000035 kcal Electronic energy + Delta-G solvation = -16837.623436 eV Core-core repulsion = 13952.125559 eV Total energy + Delta-G solvation = -2885.497878 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.039 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.43822 -39.35663 -36.55392 -34.92492 -32.52724 -30.50062 -28.44150 -25.63420 -25.01622 -23.12109 -22.46369 -21.28565 -19.60637 -18.17340 -17.78196 -17.14765 -16.34643 -15.67553 -15.31943 -14.89031 -14.54885 -14.36912 -14.20795 -13.98004 -13.56608 -12.72273 -12.47612 -12.41059 -11.64323 -11.45592 -11.20425 -11.13585 -11.13433 -10.85825 -10.84614 -10.50496 -10.09852 -9.91053 -9.36060 -9.16789 -8.91251 -8.40188 -8.02027 -6.63874 -6.31721 -4.04254 0.75434 1.17559 1.89399 2.47342 2.71067 2.88767 3.15974 3.20385 3.25509 3.45681 3.82438 4.09635 4.22394 4.55143 4.71404 4.85851 4.90723 5.04206 5.16410 5.34506 5.45800 5.50251 5.63828 5.64071 5.82770 5.91810 5.96951 6.06786 6.27965 7.09373 7.50630 7.76574 8.03985 8.25448 9.14049 10.75731 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.030864 B = 0.003644 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.979854 B = 7681.096161 C = 8505.186674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.075 3.925 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.075 0.925 9 S -0.053 6.053 10 C -0.150 4.150 11 C 0.524 3.476 12 O -0.482 6.482 13 N -0.632 5.632 14 C 0.018 3.982 15 S 0.245 5.755 16 C -0.056 4.056 17 N -0.446 5.446 18 C 0.026 3.974 19 C -0.085 4.085 20 C -0.158 4.158 21 C -0.166 4.166 22 H 0.269 0.731 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.417 0.583 26 H 0.195 0.805 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.224 -17.365 0.297 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.686 4.686 8 H 0.093 0.907 9 S 0.174 5.826 10 C -0.301 4.301 11 C 0.311 3.689 12 O -0.354 6.354 13 N -0.279 5.279 14 C -0.201 4.201 15 S 0.495 5.505 16 C -0.354 4.354 17 N -0.159 5.159 18 C -0.110 4.110 19 C -0.106 4.106 20 C -0.196 4.196 21 C -0.204 4.204 22 H 0.079 0.921 23 H 0.116 0.884 24 H 0.116 0.884 25 H 0.256 0.744 26 H 0.212 0.788 27 H 0.130 0.870 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.303 -17.527 0.294 18.314 hybrid contribution 3.304 1.350 -0.023 3.570 sum 8.607 -16.177 0.271 18.327 Atomic orbital electron populations 1.70015 1.05975 1.27567 1.46571 1.24999 0.95052 0.99120 0.94321 0.86088 0.79567 0.81687 0.77993 1.19564 1.20486 1.20481 1.22886 0.94986 0.91367 1.59389 0.90681 1.85447 1.04004 0.96384 1.96787 1.23496 1.07321 0.93538 1.05705 1.20856 0.86496 0.86639 0.74956 1.90670 1.15013 1.83899 1.45864 1.43133 1.11128 1.01356 1.72296 1.23502 0.98390 0.88941 1.09309 1.85139 1.00404 0.97983 1.66981 1.28389 0.95272 1.03180 1.08528 1.65989 1.05695 1.30068 1.14190 1.19005 0.95509 0.85501 1.10954 1.20275 0.87161 0.98112 1.05051 1.22907 1.01423 0.96162 0.99084 1.22977 1.01702 1.03733 0.91938 0.92086 0.88388 0.88414 0.74445 0.78849 0.86963 0.87663 0.88771 0.88502 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.33 13.22 55.49 0.73 -24.60 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.76 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.70 9.50 30.94 0.29 -14.40 16 8 H 0.08 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.05 -1.35 20.57 -107.50 -2.21 -3.56 16 10 C -0.15 -2.78 6.16 36.00 0.22 -2.56 16 11 C 0.52 9.10 7.81 -10.99 -0.09 9.01 16 12 O -0.48 -9.88 13.49 5.53 0.07 -9.80 16 13 N -0.63 -8.60 5.41 -10.61 -0.06 -8.65 16 14 C 0.02 0.25 7.18 -15.28 -0.11 0.14 16 15 S 0.24 3.36 20.47 -107.50 -2.20 1.16 16 16 C -0.06 -0.66 12.21 51.54 0.63 -0.03 16 17 N -0.45 -5.94 9.83 -11.75 -0.12 -6.05 16 18 C 0.03 0.34 6.39 -83.95 -0.54 -0.20 16 19 C -0.09 -0.89 5.82 -91.77 -0.53 -1.43 16 20 C -0.16 -1.48 10.08 -26.73 -0.27 -1.75 16 21 C -0.17 -1.54 10.23 -26.73 -0.27 -1.81 16 22 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.10 1.65 8.14 -51.92 -0.42 1.22 16 24 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 25 H 0.42 4.28 7.71 -40.82 -0.31 3.96 16 26 H 0.19 1.60 8.06 -52.49 -0.42 1.17 16 27 H 0.11 0.98 7.39 -51.93 -0.38 0.60 16 28 H 0.10 1.11 7.73 -51.93 -0.40 0.70 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 302.48 15.07 4.56 4.56 Total: -1.00 -32.69 302.48 -8.18 -40.87 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -3.18 Total: 1.39 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -0.76 Total: -11.05 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.56 Total: -39.30 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.80 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -4.41 Total: -2.40 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.69 -8.18 -40.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342875869.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.875 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds