Wall clock time and date at job start Tue Mar 31 2020 05:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46993 * 180.81483 * 3 2 1 5 5 N 1.46894 * 109.47337 * 183.50826 * 4 3 2 6 6 C 1.46898 * 111.00009 * 164.57568 * 5 4 3 7 7 C 1.50700 * 109.47020 * 293.95694 * 6 5 4 8 8 H 1.07994 * 120.00430 * 359.97438 * 7 6 5 9 9 C 1.37889 * 119.99984 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99722 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00036 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46983 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47155 * 119.99316 * 11 9 7 14 14 H 1.48500 * 109.46713 * 239.99686 * 11 9 7 15 15 C 1.46893 * 111.00269 * 288.53295 * 5 4 3 16 16 C 1.50708 * 109.47381 * 164.22380 * 15 5 4 17 17 C 1.38469 * 122.55619 * 104.39005 * 16 15 5 18 18 C 1.33354 * 114.93045 * 180.02562 * 17 16 15 19 19 S 1.75882 * 109.61834 * 0.02562 * 18 17 16 20 20 C 1.33500 * 122.55592 * 284.11023 * 16 15 5 21 21 Cl 1.73605 * 125.20940 * 359.97438 * 20 16 15 22 22 H 1.09004 * 109.46950 * 60.82261 * 3 2 1 23 23 H 1.08990 * 109.47668 * 300.81486 * 3 2 1 24 24 H 1.09007 * 109.46707 * 63.51181 * 4 3 2 25 25 H 1.09004 * 109.47405 * 303.51786 * 4 3 2 26 26 H 1.08995 * 109.47299 * 53.95473 * 6 5 4 27 27 H 1.09000 * 109.47421 * 173.95704 * 6 5 4 28 28 H 0.97000 * 119.99779 * 180.02562 * 10 9 7 29 29 H 1.09006 * 109.47219 * 284.22287 * 15 5 4 30 30 H 1.08996 * 109.47266 * 44.22462 * 15 5 4 31 31 H 1.07996 * 122.53742 * 359.97438 * 17 16 15 32 32 H 1.07997 * 125.19247 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.4433 0.0205 5 7 4.5839 1.4461 -0.0642 6 6 5.0885 2.7810 -0.4127 7 6 4.6479 3.1356 -1.8096 8 1 4.0530 2.4389 -2.3814 9 6 5.0053 4.3492 -2.3580 10 7 5.7302 5.1973 -1.6619 11 14 4.4586 4.7891 -4.0892 12 1 3.6586 3.6728 -4.6543 13 1 3.6306 6.0211 -4.0487 14 1 5.6525 5.0227 -4.9409 15 6 5.1845 0.9666 1.1876 16 6 6.6303 0.6149 0.9488 17 6 7.6731 1.4226 1.3703 18 6 8.8914 0.9656 1.0785 19 16 8.7587 -0.5659 0.2240 20 6 7.0036 -0.5017 0.3195 21 17 5.9221 -1.7041 -0.3120 22 1 2.9716 -0.5002 -0.8973 23 1 2.9717 -0.5256 0.8825 24 1 2.8061 1.9253 0.9473 25 1 2.7032 1.9870 -0.8286 26 1 4.6927 3.5140 0.2901 27 1 6.1774 2.7819 -0.3640 28 1 5.9813 6.0512 -2.0475 29 1 5.1210 1.7488 1.9441 30 1 4.6479 0.0828 1.5329 31 1 7.5119 2.3527 1.8949 32 1 9.8182 1.4605 1.3287 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361592062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:45 Heat of formation + Delta-G solvation = 56.985080 kcal Electronic energy + Delta-G solvation = -17599.280600 eV Core-core repulsion = 14712.735722 eV Total energy + Delta-G solvation = -2886.544878 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.67222 -36.94854 -36.25373 -35.72559 -32.71694 -31.08705 -29.53814 -27.25649 -25.51591 -23.08330 -22.79779 -20.18534 -18.71861 -17.71142 -17.29020 -16.39834 -15.56517 -14.83094 -14.63810 -14.52067 -13.72410 -13.53759 -13.43198 -13.16525 -12.97715 -12.59321 -12.32621 -12.02889 -11.84302 -11.74009 -11.29122 -11.21897 -11.04242 -10.88145 -10.72093 -10.60256 -10.38728 -10.28853 -9.91173 -9.23104 -8.47879 -8.32432 -8.19877 -7.40821 -6.06472 -4.06952 1.09237 1.40185 2.04668 2.59991 2.86180 2.98133 3.00878 3.29426 3.37680 3.42013 4.20193 4.41678 4.94081 5.22531 5.30692 5.35221 5.45900 5.50592 5.56328 5.76979 5.79888 5.97800 6.18539 6.29359 6.45605 6.52917 6.61086 7.18664 7.24839 7.72806 7.79030 7.98930 8.08720 8.44924 9.00279 9.57392 11.04260 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.010803 B = 0.007469 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.294566 B = 3748.155104 C = 5494.936856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.219 3.781 3 C -0.029 4.029 4 C 0.067 3.933 5 N -0.524 5.524 6 C 0.195 3.805 7 C -0.507 4.507 8 H 0.065 0.935 9 C 0.058 3.942 10 N -0.896 5.896 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.284 1.284 15 C 0.104 3.896 16 C -0.066 4.066 17 C -0.109 4.109 18 C -0.209 4.209 19 S 0.111 5.889 20 C -0.122 4.122 21 Cl -0.014 7.014 22 H 0.115 0.885 23 H 0.099 0.901 24 H 0.031 0.969 25 H 0.097 0.903 26 H -0.008 1.008 27 H 0.039 0.961 28 H 0.260 0.740 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.146 0.854 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.643 -11.254 7.079 14.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.099 4.099 3 C -0.069 4.069 4 C -0.062 4.062 5 N -0.248 5.248 6 C 0.070 3.930 7 C -0.546 4.546 8 H 0.083 0.917 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.026 4.026 16 C -0.080 4.080 17 C -0.140 4.140 18 C -0.345 4.345 19 S 0.373 5.627 20 C -0.266 4.266 21 Cl 0.015 6.985 22 H 0.133 0.867 23 H 0.117 0.883 24 H 0.049 0.951 25 H 0.116 0.884 26 H 0.010 0.990 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.163 0.837 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.118 -12.528 6.020 14.812 hybrid contribution -0.950 1.947 0.100 2.169 sum 4.168 -10.581 6.121 12.915 Atomic orbital electron populations 1.81165 1.13231 1.09190 1.09749 1.29363 0.95414 0.92616 0.92469 1.19453 0.80514 1.01364 1.05594 1.21878 0.89758 0.92404 1.02209 1.62077 1.03630 1.30831 1.28262 1.19772 0.96197 0.81160 0.95858 1.21180 1.32994 1.01124 0.99267 0.91706 1.24945 0.95272 0.96400 0.97774 1.69952 1.37660 1.08863 1.37131 0.86518 0.78418 0.78335 0.84642 1.19617 1.21186 1.21056 1.20793 0.89491 0.99601 0.92733 1.18813 0.97542 0.92491 0.99186 1.19985 0.90856 1.00813 1.02331 1.25500 1.02017 0.99948 1.07027 1.84127 0.99153 1.21277 1.58193 1.24812 0.94399 0.98256 1.09124 1.98329 1.62115 1.52831 1.85246 0.86735 0.88253 0.95059 0.88427 0.99023 0.94347 0.93024 0.94087 0.90600 0.83676 0.81583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.75 18.54 42.16 0.78 -6.97 16 2 C 0.22 3.20 15.43 -20.76 -0.32 2.88 16 3 C -0.03 -0.37 5.70 -29.52 -0.17 -0.53 16 4 C 0.07 1.09 4.77 -3.83 -0.02 1.07 16 5 N -0.52 -9.51 4.40 -237.52 -1.05 -10.55 16 6 C 0.19 4.54 4.57 -4.98 -0.02 4.51 16 7 C -0.51 -13.24 8.29 -34.44 -0.29 -13.52 16 8 H 0.06 1.68 7.25 -52.49 -0.38 1.30 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -25.46 13.29 55.43 0.74 -24.72 16 11 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.10 1.58 4.66 -4.98 -0.02 1.56 16 16 C -0.07 -1.01 4.58 -106.19 -0.49 -1.50 16 17 C -0.11 -1.59 9.24 -41.20 -0.38 -1.97 16 18 C -0.21 -2.69 11.22 29.03 0.33 -2.37 16 19 S 0.11 1.43 23.34 -107.50 -2.51 -1.08 16 20 C -0.12 -1.79 7.07 29.07 0.21 -1.58 16 21 Cl -0.01 -0.19 28.62 -51.86 -1.48 -1.67 16 22 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 23 H 0.10 1.04 6.64 -51.93 -0.34 0.70 16 24 H 0.03 0.49 8.06 -51.92 -0.42 0.07 16 25 H 0.10 1.83 6.59 -51.93 -0.34 1.49 16 26 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 27 H 0.04 0.97 6.70 -51.93 -0.35 0.62 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.04 0.62 7.98 -51.93 -0.41 0.20 16 30 H 0.08 0.97 6.15 -51.93 -0.32 0.65 16 31 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -29.31 310.09 -8.53 -37.84 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -3.39 Total: -3.62 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.27 Total: -9.99 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.47 Total: -42.25 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.51 Total: -1.08 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.48 Total: -1.67 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.31 -8.53 -37.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361592062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.823 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds