Wall clock time and date at job start Tue Mar 31 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00220 * 2 1 4 4 H 1.48503 * 109.47443 * 270.00141 * 3 2 1 5 5 H 1.48500 * 109.47390 * 30.00325 * 3 2 1 6 6 H 1.48499 * 109.47217 * 150.00208 * 3 2 1 7 7 C 1.37886 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99945 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99801 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47216 * 179.97438 * 9 7 2 11 11 C 1.42907 * 114.00470 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46956 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.47148 * 65.00173 * 12 11 10 14 14 C 1.35617 * 116.99850 * 179.97438 * 13 12 11 15 15 C 1.38683 * 120.15889 * 0.31910 * 14 13 12 16 16 C 1.38044 * 120.12889 * 180.25695 * 15 14 13 17 17 C 1.38729 * 120.44031 * 359.43711 * 16 15 14 18 18 Cl 1.73594 * 119.84369 * 180.27971 * 17 16 15 19 19 C 1.37783 * 120.30972 * 0.26226 * 17 16 15 20 20 C 1.40016 * 119.86765 * 0.02562 * 19 17 16 21 21 C 1.46790 * 120.21932 * 180.02562 * 20 19 17 22 22 O 1.21301 * 119.99665 * 359.97438 * 21 20 19 23 23 H 0.96991 * 119.99609 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47664 * 59.99969 * 9 7 2 25 25 H 1.09000 * 109.47281 * 299.99661 * 9 7 2 26 26 H 1.09001 * 109.47001 * 59.99712 * 11 10 9 27 27 H 1.09002 * 109.46416 * 300.00023 * 11 10 9 28 28 H 1.08992 * 109.47433 * 304.99904 * 12 11 10 29 29 H 1.09006 * 109.46330 * 184.99592 * 12 11 10 30 30 H 1.08008 * 119.93662 * 359.97265 * 15 14 13 31 31 H 1.08002 * 119.78410 * 179.72497 * 16 15 14 32 32 H 1.07998 * 120.06599 * 179.97438 * 19 17 16 33 33 H 1.07998 * 120.00230 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 8 2.1795 -3.5853 -0.0027 11 6 1.5650 -4.8755 -0.0044 12 6 2.6480 -5.9563 -0.0060 13 8 3.3874 -5.8914 1.2152 14 6 4.3918 -6.7885 1.3751 15 6 4.6682 -7.7103 0.3765 16 6 5.6873 -8.6267 0.5422 17 6 6.4505 -8.6273 1.7007 18 17 7.7330 -9.7819 1.8897 19 6 6.1956 -7.7155 2.7018 20 6 5.1613 -6.7842 2.5499 21 6 4.8834 -5.8090 3.6112 22 8 5.5506 -5.8086 4.6243 23 1 -0.4849 0.8400 0.0004 24 1 0.6246 -2.5564 -0.8920 25 1 0.6240 -2.5575 0.8880 26 1 0.9451 -4.9815 -0.8947 27 1 0.9446 -4.9835 0.8853 28 1 3.3215 -5.7946 -0.8475 29 1 2.1819 -6.9374 -0.0968 30 1 4.0820 -7.7143 -0.5306 31 1 5.8948 -9.3450 -0.2372 32 1 6.7920 -7.7198 3.6022 33 1 4.0844 -5.0925 3.4906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395369335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:16 Heat of formation + Delta-G solvation = -104.904486 kcal Electronic energy + Delta-G solvation = -18972.054829 eV Core-core repulsion = 15603.444271 eV Total energy + Delta-G solvation = -3368.610558 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.67085 -38.82918 -37.89152 -36.78642 -36.23987 -32.85210 -31.87084 -30.77246 -29.39719 -27.01094 -25.24745 -23.50216 -22.41974 -21.85667 -21.05508 -18.58926 -17.24250 -16.67351 -16.47215 -16.40532 -15.48982 -15.19601 -14.81097 -14.74662 -14.48476 -14.37583 -14.05670 -13.89161 -13.36147 -13.09045 -12.63970 -12.10313 -12.02588 -11.79102 -11.43934 -11.24175 -11.01735 -10.88819 -10.80898 -10.65971 -10.11518 -9.80516 -9.48009 -9.19663 -8.95953 -8.43078 -8.28973 -6.17024 -4.19031 0.34564 0.91515 1.86221 2.26396 2.89737 3.27553 3.33084 3.38528 3.39567 4.11588 4.25149 4.37955 4.55650 4.59442 4.70844 4.94300 5.09714 5.18639 5.20005 5.22553 5.43634 5.61607 5.64640 5.74051 5.81879 5.89259 5.93841 6.18386 6.96379 7.06711 7.32031 7.38539 7.72540 8.05769 8.43370 8.93132 9.46196 10.94454 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.024520 B = 0.003144 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.631249 B = 8903.807501 C = 9407.787314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.517 4.517 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.061 3.939 13 O -0.288 6.288 14 C 0.198 3.802 15 C -0.215 4.215 16 C -0.035 4.035 17 C -0.096 4.096 18 Cl -0.071 7.071 19 C -0.013 4.013 20 C -0.217 4.217 21 C 0.394 3.606 22 O -0.468 6.468 23 H 0.265 0.735 24 H 0.006 0.994 25 H 0.008 0.992 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.145 0.855 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.362 -19.549 0.408 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.310 6.310 11 C -0.017 4.017 12 C -0.014 4.014 13 O -0.199 6.199 14 C 0.149 3.851 15 C -0.234 4.234 16 C -0.053 4.053 17 C -0.122 4.122 18 Cl -0.042 7.042 19 C -0.031 4.031 20 C -0.219 4.219 21 C 0.253 3.747 22 O -0.342 6.342 23 H 0.074 0.926 24 H 0.024 0.976 25 H 0.026 0.974 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.163 0.837 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.781 -19.316 1.094 21.247 hybrid contribution 0.049 0.537 -0.495 0.733 sum 8.830 -18.779 0.599 20.760 Atomic orbital electron populations 1.69950 1.06122 1.27295 1.50372 1.24946 0.94987 0.99488 0.95012 0.86328 0.79739 0.82149 0.78259 1.20446 1.21027 1.19533 1.21036 0.94115 0.89247 1.51093 0.91473 1.20245 0.88690 0.83407 0.95546 1.87922 1.35343 1.12543 1.95241 1.22296 0.93047 0.85496 1.00829 1.23175 0.94081 0.99174 0.84938 1.86175 1.42171 1.51121 1.40421 1.19381 0.86468 0.86950 0.92294 1.21264 1.02542 0.98860 1.00756 1.21050 0.92181 0.96696 0.95411 1.20620 0.96397 0.97458 0.97768 1.98365 1.49554 1.58688 1.97609 1.21157 0.94000 0.90256 0.97737 1.20279 1.00570 1.03718 0.97316 1.23917 0.84878 0.82859 0.83027 1.90508 1.46817 1.67952 1.28908 0.92572 0.97608 0.97421 0.91792 0.92990 0.90593 0.90626 0.83698 0.84281 0.83413 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.81 9.43 -34.44 -0.32 -15.14 16 8 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 9 C 0.20 5.10 5.69 36.00 0.20 5.30 16 10 O -0.39 -8.75 10.29 -40.08 -0.41 -9.16 16 11 C 0.06 0.97 6.32 37.16 0.23 1.20 16 12 C 0.06 0.73 5.12 37.16 0.19 0.92 16 13 O -0.29 -3.93 9.28 -23.39 -0.22 -4.15 16 14 C 0.20 2.36 6.71 -38.59 -0.26 2.10 16 15 C -0.22 -2.05 9.03 -39.49 -0.36 -2.41 16 16 C -0.03 -0.31 9.81 -39.47 -0.39 -0.69 16 17 C -0.10 -0.97 6.31 -39.57 -0.25 -1.22 16 18 Cl -0.07 -0.67 28.94 -51.86 -1.50 -2.17 16 19 C -0.01 -0.14 9.37 -39.08 -0.37 -0.51 16 20 C -0.22 -2.68 5.88 -104.95 -0.62 -3.30 16 21 C 0.39 5.27 11.19 34.19 0.38 5.66 16 22 O -0.47 -7.39 17.16 5.54 0.10 -7.30 16 23 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.86 7.65 -51.93 -0.40 0.46 16 29 H 0.08 0.63 7.67 -51.93 -0.40 0.23 16 30 H 0.15 1.06 6.30 -52.48 -0.33 0.73 16 31 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.15 1.63 7.65 -52.49 -0.40 1.23 16 33 H 0.12 1.50 7.63 -52.49 -0.40 1.10 16 LS Contribution 313.79 15.07 4.73 4.73 Total: -1.00 -31.99 313.79 -6.82 -38.82 By element: Atomic # 1 Polarization: -1.56 SS G_CDS: -3.59 Total: -5.14 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -1.64 Total: -6.57 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.74 Total: -25.53 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.53 Total: -20.60 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.99 -6.82 -38.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395369335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.089 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds