Wall clock time and date at job start Tue Mar 31 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00220 * 2 1 4 4 H 1.48503 * 109.47443 * 270.00141 * 3 2 1 5 5 H 1.48500 * 109.47390 * 30.00325 * 3 2 1 6 6 H 1.48499 * 109.47217 * 150.00208 * 3 2 1 7 7 C 1.37886 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99945 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99801 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47216 * 179.97438 * 9 7 2 11 11 C 1.42907 * 114.00470 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46956 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.47148 * 65.00173 * 12 11 10 14 14 C 1.35617 * 116.99850 * 179.97438 * 13 12 11 15 15 C 1.38683 * 120.15889 * 0.31910 * 14 13 12 16 16 C 1.38044 * 120.12889 * 180.25695 * 15 14 13 17 17 C 1.38729 * 120.44031 * 359.43711 * 16 15 14 18 18 Cl 1.73594 * 119.84369 * 180.27971 * 17 16 15 19 19 C 1.37783 * 120.30972 * 0.26226 * 17 16 15 20 20 C 1.40016 * 119.86765 * 0.02562 * 19 17 16 21 21 C 1.46790 * 120.21932 * 180.02562 * 20 19 17 22 22 O 1.21301 * 119.99665 * 359.97438 * 21 20 19 23 23 H 0.96991 * 119.99609 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47664 * 59.99969 * 9 7 2 25 25 H 1.09000 * 109.47281 * 299.99661 * 9 7 2 26 26 H 1.09001 * 109.47001 * 59.99712 * 11 10 9 27 27 H 1.09002 * 109.46416 * 300.00023 * 11 10 9 28 28 H 1.08992 * 109.47433 * 304.99904 * 12 11 10 29 29 H 1.09006 * 109.46330 * 184.99592 * 12 11 10 30 30 H 1.08008 * 119.93662 * 359.97265 * 15 14 13 31 31 H 1.08002 * 119.78410 * 179.72497 * 16 15 14 32 32 H 1.07998 * 120.06599 * 179.97438 * 19 17 16 33 33 H 1.07998 * 120.00230 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 8 2.1795 -3.5853 -0.0027 11 6 1.5650 -4.8755 -0.0044 12 6 2.6480 -5.9563 -0.0060 13 8 3.3874 -5.8914 1.2152 14 6 4.3918 -6.7885 1.3751 15 6 4.6682 -7.7103 0.3765 16 6 5.6873 -8.6267 0.5422 17 6 6.4505 -8.6273 1.7007 18 17 7.7330 -9.7819 1.8897 19 6 6.1956 -7.7155 2.7018 20 6 5.1613 -6.7842 2.5499 21 6 4.8834 -5.8090 3.6112 22 8 5.5506 -5.8086 4.6243 23 1 -0.4849 0.8400 0.0004 24 1 0.6246 -2.5564 -0.8920 25 1 0.6240 -2.5575 0.8880 26 1 0.9451 -4.9815 -0.8947 27 1 0.9446 -4.9835 0.8853 28 1 3.3215 -5.7946 -0.8475 29 1 2.1819 -6.9374 -0.0968 30 1 4.0820 -7.7143 -0.5306 31 1 5.8948 -9.3450 -0.2372 32 1 6.7920 -7.7198 3.6022 33 1 4.0844 -5.0925 3.4906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395369335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:16 Heat of formation + Delta-G solvation = -124.765143 kcal Electronic energy + Delta-G solvation = -18972.916052 eV Core-core repulsion = 15603.444271 eV Total energy + Delta-G solvation = -3369.471781 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.57809 -39.91704 -38.90221 -38.23556 -37.13215 -34.94161 -32.78166 -31.83432 -30.49862 -28.93858 -26.16943 -24.73124 -24.30701 -22.82414 -22.01309 -19.48869 -18.69267 -18.11472 -17.74563 -17.51837 -16.80272 -16.49357 -16.15151 -16.00890 -15.81473 -15.39771 -15.24178 -15.15490 -14.45452 -14.23260 -13.77583 -13.42192 -13.37439 -13.05975 -12.77416 -12.60699 -12.57956 -12.29909 -12.02731 -11.88637 -11.66957 -11.26741 -10.89614 -10.85257 -10.30111 -10.23837 -9.28447 -8.32203 -6.43605 -0.53455 0.08994 1.08134 1.30555 1.40951 1.42818 1.54937 1.97854 2.34743 2.52911 3.02276 3.11505 3.21667 3.61591 3.74168 3.94599 4.02716 4.16372 4.23942 4.32207 4.48258 4.56538 4.66721 4.71762 4.82000 4.89090 4.99097 5.06089 5.20155 5.36977 5.55440 5.96715 6.17201 6.34332 6.53209 6.82108 7.28269 8.79803 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.024520 B = 0.003144 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.631249 B = 8903.807501 C = 9407.787314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.978 3.022 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.209 3.791 10 O -0.409 6.409 11 C 0.047 3.953 12 C 0.064 3.936 13 O -0.314 6.314 14 C 0.189 3.811 15 C -0.207 4.207 16 C -0.023 4.023 17 C -0.099 4.099 18 Cl -0.064 7.064 19 C -0.020 4.020 20 C -0.235 4.235 21 C 0.397 3.603 22 O -0.500 6.500 23 H 0.271 0.729 24 H -0.007 1.007 25 H -0.013 1.013 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.175 0.825 31 H 0.171 0.829 32 H 0.143 0.857 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.043 -20.618 -1.106 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.078 0.922 9 C 0.134 3.866 10 O -0.329 6.329 11 C -0.030 4.030 12 C -0.009 4.009 13 O -0.226 6.226 14 C 0.141 3.859 15 C -0.226 4.226 16 C -0.042 4.042 17 C -0.125 4.125 18 Cl -0.035 7.035 19 C -0.039 4.039 20 C -0.237 4.237 21 C 0.259 3.741 22 O -0.377 6.377 23 H 0.080 0.920 24 H 0.011 0.989 25 H 0.005 0.995 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.140 0.860 30 H 0.192 0.808 31 H 0.189 0.811 32 H 0.161 0.839 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.458 -20.415 -0.433 22.504 hybrid contribution -0.172 0.724 -0.054 0.746 sum 9.286 -19.692 -0.488 21.777 Atomic orbital electron populations 1.70046 1.07613 1.28620 1.50548 1.25891 0.95926 1.03201 0.94017 0.85251 0.78380 0.77374 0.78857 1.19171 1.20050 1.19145 1.21402 0.94091 0.91040 1.52125 0.92182 1.19822 0.88504 0.84408 0.93817 1.87859 1.35396 1.14296 1.95323 1.22717 0.95033 0.83483 1.01755 1.23253 0.93425 0.99578 0.84682 1.86124 1.43007 1.52214 1.41273 1.19478 0.86218 0.87435 0.92790 1.21571 1.02551 0.97626 1.00819 1.21419 0.90913 0.96520 0.95303 1.20756 0.96693 0.97174 0.97913 1.98371 1.49251 1.58234 1.97632 1.21160 0.93899 0.90652 0.98208 1.20182 1.01776 1.04211 0.97539 1.24055 0.84263 0.82910 0.82862 1.90488 1.47986 1.69015 1.30203 0.92046 0.98913 0.99490 0.89848 0.93100 0.89606 0.85961 0.80801 0.81128 0.83903 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.72 13.29 21.45 0.28 -54.44 16 2 C 0.01 0.47 5.46 84.66 0.46 0.94 16 3 Si 0.98 43.88 29.54 68.60 2.03 45.91 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -31.99 9.43 25.60 0.24 -31.75 16 8 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 9 C 0.21 11.22 5.69 71.23 0.41 11.63 16 10 O -0.41 -18.46 10.29 -144.35 -1.49 -19.94 16 11 C 0.05 1.44 6.32 71.98 0.45 1.89 16 12 C 0.06 1.37 5.12 71.98 0.37 1.74 16 13 O -0.31 -8.20 9.28 -84.65 -0.79 -8.99 16 14 C 0.19 4.21 6.71 22.91 0.15 4.36 16 15 C -0.21 -3.23 9.03 22.33 0.20 -3.02 16 16 C -0.02 -0.33 9.81 22.34 0.22 -0.11 16 17 C -0.10 -1.81 6.31 22.28 0.14 -1.67 16 18 Cl -0.06 -1.08 28.94 -2.72 -0.08 -1.16 16 19 C -0.02 -0.45 9.37 22.59 0.21 -0.24 16 20 C -0.23 -5.77 5.88 -20.08 -0.12 -5.89 16 21 C 0.40 11.09 11.19 70.06 0.78 11.88 16 22 O -0.50 -16.56 17.16 -3.09 -0.05 -16.61 16 23 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 24 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 25 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 26 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 1.67 7.65 -2.39 -0.02 1.65 16 29 H 0.12 1.49 7.67 -2.38 -0.02 1.47 16 30 H 0.17 1.66 6.30 -2.91 -0.02 1.64 16 31 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.14 3.22 7.65 -2.91 -0.02 3.20 16 33 H 0.12 3.21 7.63 -2.91 -0.02 3.19 16 Total: -1.00 -70.28 313.79 4.56 -65.72 By element: Atomic # 1 Polarization: -1.37 SS G_CDS: 1.13 Total: -0.24 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 3.53 Total: -10.25 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.28 Total: -54.44 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -2.32 Total: -45.54 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -70.28 4.56 -65.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395369335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.046 kcal (2) G-P(sol) polarization free energy of solvation -70.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds