Wall clock time and date at job start Tue Mar 31 2020 05:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39690 * 120.16668 * 260.27371 * 3 2 1 5 5 C 1.37871 * 119.86917 * 179.74470 * 4 3 2 6 6 C 1.38444 * 120.21641 * 0.53951 * 5 4 3 7 7 C 1.50699 * 119.82621 * 179.71857 * 6 5 4 8 8 N 1.46499 * 109.47073 * 270.02214 * 7 6 5 9 9 S 1.65600 * 120.00018 * 165.00303 * 8 7 6 10 10 O 1.42096 * 106.40428 * 178.53912 * 9 8 7 11 11 O 1.42105 * 106.40207 * 311.45714 * 9 8 7 12 12 C 1.76200 * 107.22270 * 64.99531 * 9 8 7 13 13 H 1.08004 * 119.99482 * 0.02562 * 12 9 8 14 14 C 1.37878 * 120.00349 * 179.97438 * 12 9 8 15 15 N 1.31507 * 119.99908 * 179.97438 * 14 12 9 16 16 Si 1.86800 * 119.99749 * 0.02562 * 14 12 9 17 17 H 1.48498 * 109.47508 * 89.99774 * 16 14 12 18 18 H 1.48505 * 109.46964 * 209.99698 * 16 14 12 19 19 H 1.48503 * 109.46956 * 329.99522 * 16 14 12 20 20 C 1.38232 * 120.35022 * 359.73752 * 6 5 4 21 21 C 1.38280 * 120.11727 * 359.97438 * 20 6 5 22 22 F 1.35111 * 120.10789 * 179.97438 * 21 20 6 23 23 H 1.07999 * 120.06353 * 0.02562 * 4 3 2 24 24 H 1.08003 * 119.88983 * 180.25882 * 5 4 3 25 25 H 1.09007 * 109.47362 * 30.02067 * 7 6 5 26 26 H 1.09000 * 109.47282 * 150.01961 * 7 6 5 27 27 H 0.97000 * 119.99914 * 344.99661 * 8 7 6 28 28 H 0.97009 * 119.99910 * 180.02562 * 15 14 12 29 29 H 1.07995 * 119.93874 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 0.2050 1.1904 5 6 4.6485 0.1991 1.1842 6 6 5.3392 0.0026 0.0005 7 6 6.8462 0.0042 0.0029 8 7 7.3334 1.3672 -0.2227 9 16 8.9145 1.7443 0.0936 10 8 9.0784 3.1121 -0.2550 11 8 9.1976 1.2331 1.3889 12 6 9.9064 0.8215 -1.0330 13 1 9.4385 0.1642 -1.7510 14 6 11.2797 0.9394 -0.9988 15 7 12.0199 0.2502 -1.8394 16 14 12.0888 2.0768 0.2425 17 1 12.3706 1.3257 1.4922 18 1 13.3609 2.5979 -0.3193 19 1 11.1783 3.2112 0.5414 20 6 4.6538 -0.1948 -1.1835 21 6 3.2710 -0.1976 -1.1927 22 9 2.6013 -0.3900 -2.3502 23 1 2.7335 0.3627 2.1144 24 1 5.1915 0.3529 2.1051 25 1 7.2084 -0.3564 0.9657 26 1 7.2115 -0.6482 -0.7902 27 1 6.7298 2.0488 -0.5575 28 1 12.9862 0.3328 -1.8151 29 1 5.1992 -0.3479 -2.1030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404566170.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:54 Heat of formation + Delta-G solvation = -71.316899 kcal Electronic energy + Delta-G solvation = -19022.084272 eV Core-core repulsion = 15565.806334 eV Total energy + Delta-G solvation = -3456.277939 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.042 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.29787 -39.74512 -36.93594 -35.74761 -34.94031 -34.51881 -33.09010 -31.48983 -30.94397 -26.57746 -26.31154 -23.23588 -22.48587 -19.47899 -19.27465 -17.68457 -17.39202 -16.94047 -16.62252 -16.08341 -15.79243 -15.06369 -14.86853 -14.51915 -14.02536 -13.89278 -13.82121 -13.48375 -13.36522 -13.17394 -12.96297 -12.58614 -12.43152 -12.02960 -11.72462 -11.45613 -11.30143 -10.86348 -10.71338 -10.57560 -9.95007 -9.40158 -9.35558 -9.26399 -9.08378 -8.72236 -6.85992 -5.41085 0.23201 0.81127 1.95434 2.31303 2.58626 3.03892 3.13691 3.22644 3.37708 3.44070 3.72267 3.90396 4.29106 4.31271 4.44240 4.55291 4.81900 4.89765 5.21200 5.28394 5.41208 5.51241 5.66389 5.77130 5.82147 5.99674 6.22321 6.35329 6.41060 7.13266 7.40924 7.56422 8.13340 8.64728 10.26015 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.039006 B = 0.003950 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.659581 B = 7087.767011 C = 7444.257362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C 0.256 3.744 3 C -0.067 4.067 4 C -0.043 4.043 5 C -0.113 4.113 6 C -0.029 4.029 7 C 0.157 3.843 8 N -1.121 6.121 9 S 2.676 3.324 10 O -1.005 7.005 11 O -1.009 7.009 12 C -1.016 5.016 13 H 0.122 0.878 14 C 0.152 3.848 15 N -0.821 5.821 16 Si 0.803 3.197 17 H -0.246 1.246 18 H -0.256 1.256 19 H -0.220 1.220 20 C -0.138 4.138 21 C 0.145 3.855 22 F -0.128 7.128 23 H 0.144 0.856 24 H 0.148 0.852 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.408 0.592 28 H 0.281 0.719 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.680 -2.062 3.750 13.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.085 5.085 2 C -0.059 4.059 3 C -0.072 4.072 4 C -0.064 4.064 5 C -0.132 4.132 6 C -0.031 4.031 7 C 0.031 3.969 8 N -0.877 5.877 9 S 2.777 3.223 10 O -0.995 6.995 11 O -0.999 6.999 12 C -1.150 5.150 13 H 0.140 0.860 14 C -0.067 4.067 15 N -0.450 5.450 16 Si 0.623 3.377 17 H -0.170 1.170 18 H -0.180 1.180 19 H -0.142 1.142 20 C -0.157 4.157 21 C 0.123 3.877 22 F -0.106 7.106 23 H 0.162 0.838 24 H 0.166 0.834 25 H 0.113 0.887 26 H 0.100 0.900 27 H 0.240 0.760 28 H 0.092 0.908 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.891 -1.678 4.370 14.659 hybrid contribution 0.646 0.146 -0.624 0.911 sum -13.245 -1.531 3.745 13.849 Atomic orbital electron populations 1.81240 1.11837 1.08677 1.06735 1.25373 0.92350 0.93948 0.94240 1.16014 0.84884 1.11836 0.94449 1.21099 0.94113 0.95155 0.96021 1.21251 0.93256 0.99603 0.99087 1.20205 0.96644 0.94059 0.92206 1.20186 0.87904 0.84921 1.03884 1.55590 1.30477 1.16479 1.85133 1.01385 0.71656 0.74124 0.75104 1.93489 1.84492 1.36108 1.85452 1.93410 1.82971 1.81546 1.41984 1.30414 1.03775 1.43824 1.37020 0.86009 1.24429 0.96214 0.92608 0.93478 1.69982 1.06974 1.35599 1.32477 0.87850 0.83726 0.83462 0.82704 1.17005 1.17964 1.14229 1.21158 0.91215 1.02862 1.00514 1.17600 0.90018 0.99654 0.80402 1.91560 1.80509 1.92034 1.46517 0.83789 0.83446 0.88653 0.89973 0.76034 0.90848 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.39 18.54 41.83 0.78 -4.61 15 2 C 0.26 2.84 14.98 -22.47 -0.34 2.50 15 3 C -0.07 -0.62 5.74 -106.82 -0.61 -1.24 15 4 C -0.04 -0.32 9.76 -39.17 -0.38 -0.71 15 5 C -0.11 -0.94 9.67 -39.64 -0.38 -1.32 15 6 C -0.03 -0.28 5.28 -104.55 -0.55 -0.84 15 7 C 0.16 2.02 6.34 -5.19 -0.03 1.98 15 8 N -1.12 -17.79 5.99 -11.65 -0.07 -17.86 15 9 S 2.68 60.00 4.24 -107.50 -0.46 59.55 15 10 O -1.01 -25.02 16.02 -57.17 -0.92 -25.94 15 11 O -1.01 -24.22 16.30 -57.17 -0.93 -25.15 15 12 C -1.02 -26.12 10.26 30.60 0.31 -25.81 15 13 H 0.12 3.12 8.06 -52.48 -0.42 2.69 15 14 C 0.15 4.15 5.47 -17.82 -0.10 4.06 15 15 N -0.82 -22.66 13.96 55.43 0.77 -21.88 15 16 Si 0.80 19.61 26.54 -169.99 -4.51 15.10 15 17 H -0.25 -5.87 7.11 56.52 0.40 -5.47 15 18 H -0.26 -5.79 7.11 56.52 0.40 -5.39 15 19 H -0.22 -5.47 5.61 56.52 0.32 -5.15 15 20 C -0.14 -1.30 9.66 -39.57 -0.38 -1.69 15 21 C 0.15 1.44 7.28 -38.96 -0.28 1.15 15 22 F -0.13 -1.43 16.81 2.25 0.04 -1.39 15 23 H 0.14 0.73 8.06 -52.49 -0.42 0.31 15 24 H 0.15 1.04 8.06 -52.48 -0.42 0.62 15 25 H 0.10 1.21 7.69 -51.93 -0.40 0.81 15 26 H 0.08 1.01 8.08 -51.93 -0.42 0.59 15 27 H 0.41 5.52 8.64 -34.47 -0.30 5.22 15 28 H 0.28 7.06 8.31 -40.82 -0.34 6.72 15 29 H 0.15 1.31 8.06 -52.49 -0.42 0.88 15 LS Contribution 287.60 15.07 4.33 4.33 Total: -1.00 -32.19 287.60 -5.74 -37.93 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -2.03 Total: 1.83 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -2.75 Total: -21.90 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 1.48 Total: -44.36 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: -1.85 Total: -51.09 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.51 Total: 15.10 kcal Atomic # 16 Polarization: 60.00 SS G_CDS: -0.46 Total: 59.55 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.19 -5.74 -37.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404566170.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.387 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds