Wall clock time and date at job start Tue Mar 31 2020 05:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47439 * 2 1 4 4 N 1.46900 * 109.47171 * 120.00814 * 2 1 3 5 5 C 1.46901 * 110.99584 * 274.99620 * 4 2 1 6 6 C 1.50702 * 109.47110 * 179.97438 * 5 4 2 7 7 H 1.08010 * 119.99918 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00436 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99612 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00231 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47108 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47538 * 120.00305 * 10 8 6 13 13 H 1.48510 * 109.46882 * 239.99836 * 10 8 6 14 14 C 1.50704 * 109.47085 * 240.00518 * 2 1 3 15 15 C 1.38235 * 119.60446 * 85.00006 * 14 2 1 16 16 C 1.38612 * 119.16772 * 179.97438 * 15 14 2 17 17 C 1.38759 * 118.41440 * 0.02562 * 16 15 14 18 18 Br 1.89099 * 120.42795 * 179.97438 * 17 16 15 19 19 C 1.38273 * 119.14301 * 359.97438 * 17 16 15 20 20 N 1.31852 * 119.60582 * 264.97888 * 14 2 1 21 21 H 1.08997 * 109.47479 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47136 * 299.99851 * 1 2 3 23 23 H 1.09007 * 109.47122 * 59.99411 * 1 2 3 24 24 H 1.00901 * 110.99732 * 151.04547 * 4 2 1 25 25 H 1.09000 * 109.47545 * 300.00250 * 5 4 2 26 26 H 1.08999 * 109.46920 * 60.00249 * 5 4 2 27 27 H 0.97000 * 119.99915 * 180.02562 * 9 8 6 28 28 H 1.07998 * 120.41479 * 359.72839 * 15 14 2 29 29 H 1.08003 * 120.79075 * 179.97438 * 16 15 14 30 30 H 1.07997 * 119.62696 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6927 1.1993 5 6 2.0825 0.2224 2.3468 6 6 2.5874 -0.5221 3.5559 7 1 2.8370 -1.5702 3.4795 8 6 2.7306 0.1345 4.7598 9 7 2.4271 1.4108 4.8528 10 14 3.3571 -0.7882 6.2583 11 1 3.6256 -2.2021 5.8924 12 1 4.6103 -0.1548 6.7416 13 1 2.3326 -0.7413 7.3324 14 6 2.0323 -0.7103 -1.2306 15 6 2.1612 -0.0127 -2.4170 16 6 2.6246 -0.6748 -3.5431 17 6 2.9422 -2.0211 -3.4335 18 35 3.5786 -2.9801 -4.9339 19 6 2.7874 -2.6523 -2.2131 20 7 2.3440 -1.9896 -1.1626 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5140 -0.8900 24 1 2.9173 -1.1206 1.0285 25 1 2.7588 1.0460 2.1182 26 1 1.0871 0.6160 2.5525 27 1 2.5282 1.8729 5.6996 28 1 1.9003 1.0341 -2.4668 29 1 2.7349 -0.1554 -4.4836 30 1 3.0327 -3.6998 -2.1189 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411675255.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:39 Heat of formation + Delta-G solvation = 34.705576 kcal Electronic energy + Delta-G solvation = -14277.495257 eV Core-core repulsion = 11732.803710 eV Total energy + Delta-G solvation = -2544.691546 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.39491 -36.16939 -33.24473 -32.69405 -31.88748 -30.18306 -28.60330 -26.15378 -24.01428 -23.54667 -21.68380 -20.20201 -17.18067 -16.63322 -16.06808 -15.40024 -14.68881 -14.59656 -14.27369 -13.76213 -13.40040 -12.89718 -12.46817 -12.25740 -11.70220 -11.60170 -11.52104 -11.14588 -10.91143 -10.68547 -10.58115 -10.46680 -9.92609 -9.88628 -9.41043 -9.14515 -8.83308 -8.46358 -7.25856 -6.01636 -4.02626 0.78997 1.10520 1.36087 3.33047 3.40255 3.46351 3.61190 4.26647 4.43050 4.55011 4.63510 4.79314 5.17308 5.29147 5.34919 5.52378 5.66959 5.75666 5.82279 5.88219 6.19456 6.34193 6.45378 6.69043 7.23926 7.41988 7.79490 7.93436 8.15794 8.44736 8.64600 9.07530 9.62307 11.09703 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.036611 B = 0.003466 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.613743 B = 8076.044138 C = 8594.414248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.127 3.873 3 H 0.055 0.945 4 N -0.671 5.671 5 C 0.192 3.808 6 C -0.510 4.510 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.898 3.102 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.156 3.844 15 C -0.166 4.166 16 C -0.047 4.047 17 C -0.160 4.160 18 Br -0.046 7.046 19 C 0.136 3.864 20 N -0.447 5.447 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.046 0.954 24 H 0.337 0.663 25 H -0.015 1.015 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.744 -5.235 -22.159 22.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.016 3.984 3 H 0.072 0.928 4 N -0.303 5.303 5 C 0.065 3.935 6 C -0.549 4.549 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.726 3.274 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.210 1.210 14 C 0.018 3.982 15 C -0.188 4.188 16 C -0.074 4.074 17 C -0.241 4.241 18 Br 0.038 6.962 19 C -0.024 4.024 20 N -0.156 5.156 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.065 0.935 24 H 0.155 0.845 25 H 0.003 0.997 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.161 0.839 29 H 0.159 0.841 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.260 -6.127 -21.598 22.452 hybrid contribution 1.082 0.855 0.087 1.382 sum 1.342 -5.273 -21.511 22.188 Atomic orbital electron populations 1.21738 0.93475 1.02446 1.01194 1.20524 0.96309 0.94639 0.86963 0.92752 1.60644 1.33547 1.33676 1.02422 1.19661 0.96522 0.90188 0.87119 1.21225 1.42929 0.96860 0.93880 0.91801 1.24980 0.95710 0.94900 0.99010 1.69971 1.49146 1.09017 1.25786 0.86431 0.78317 0.80044 0.82571 1.19602 1.21155 1.21011 1.21885 0.91184 0.89896 0.95218 1.22041 1.01909 1.01980 0.92835 1.21491 0.94365 0.92216 0.99373 1.22936 1.09583 0.96703 0.94885 1.96702 1.87065 1.74289 1.38140 1.22961 0.92859 1.00326 0.86233 1.67770 1.09746 1.08582 1.29470 0.91991 0.91285 0.93524 0.84453 0.99747 0.95193 0.93021 0.83904 0.84077 0.81997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.40 37.16 0.35 -1.75 16 2 C 0.13 2.24 2.86 -68.86 -0.20 2.04 16 3 H 0.05 0.95 7.77 -51.93 -0.40 0.55 16 4 N -0.67 -14.70 6.04 -109.22 -0.66 -15.36 16 5 C 0.19 5.01 5.24 -4.97 -0.03 4.99 16 6 C -0.51 -14.62 9.32 -34.44 -0.32 -14.94 16 7 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 10 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.16 2.41 5.70 -82.58 -0.47 1.94 16 15 C -0.17 -2.02 9.76 -39.44 -0.39 -2.41 16 16 C -0.05 -0.51 9.94 -39.25 -0.39 -0.90 16 17 C -0.16 -1.84 6.25 -39.38 -0.25 -2.09 16 18 Br -0.05 -0.45 33.74 -68.01 -2.29 -2.74 16 19 C 0.14 1.79 10.95 -17.52 -0.19 1.59 16 20 N -0.45 -7.19 9.28 -9.45 -0.09 -7.28 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.07 1.20 7.45 -51.93 -0.39 0.81 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.34 7.45 7.84 -39.29 -0.31 7.14 16 25 H -0.02 -0.42 8.06 -51.93 -0.42 -0.84 16 26 H 0.03 0.83 7.44 -51.93 -0.39 0.44 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 30 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 283.21 15.07 4.27 4.27 Total: -1.00 -30.46 283.21 -8.60 -39.06 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -3.56 Total: 1.36 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -1.98 Total: -10.04 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.01 Total: -48.78 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -2.29 Total: -2.74 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.46 -8.60 -39.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411675255.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.761 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds