Wall clock time and date at job start Tue Mar 31 2020 05:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47354 * 2 1 4 4 N 1.46894 * 109.47133 * 240.00030 * 2 1 3 5 5 C 1.46896 * 111.00178 * 84.99939 * 4 2 1 6 6 C 1.50699 * 109.47403 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00076 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99984 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99831 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99828 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46652 * 60.00852 * 10 8 6 12 12 H 1.48497 * 109.47075 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47332 * 300.00598 * 10 8 6 14 14 C 1.50705 * 109.47002 * 120.00164 * 2 1 3 15 15 C 1.38233 * 119.60778 * 275.01695 * 14 2 1 16 16 C 1.38615 * 119.17165 * 179.97438 * 15 14 2 17 17 C 1.38757 * 118.40931 * 359.75220 * 16 15 14 18 18 Br 1.89101 * 120.42346 * 180.23981 * 17 16 15 19 19 C 1.38271 * 119.14618 * 0.49723 * 17 16 15 20 20 N 1.31857 * 119.60698 * 95.00105 * 14 2 1 21 21 H 1.09009 * 109.46849 * 300.00200 * 1 2 3 22 22 H 1.09001 * 109.47418 * 59.99531 * 1 2 3 23 23 H 1.09001 * 109.47354 * 179.97438 * 1 2 3 24 24 H 1.00897 * 111.00503 * 208.95722 * 4 2 1 25 25 H 1.09000 * 109.47371 * 300.00313 * 5 4 2 26 26 H 1.09001 * 109.47044 * 60.00134 * 5 4 2 27 27 H 0.97009 * 119.99599 * 179.97438 * 9 8 6 28 28 H 1.07999 * 120.41066 * 0.02562 * 15 14 2 29 29 H 1.07999 * 120.79015 * 180.02562 * 16 15 14 30 30 H 1.08002 * 119.62803 * 179.77565 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3468 6 6 2.5884 -0.5215 -3.5557 7 1 2.8380 -1.5695 -3.4793 8 6 2.7318 0.1354 -4.7595 9 7 2.4274 1.4114 -4.8525 10 14 3.3584 -0.7871 -6.2581 11 1 2.4370 -1.9094 -6.5694 12 1 3.4220 0.1379 -7.4180 13 1 4.7147 -1.3232 -5.9781 14 6 2.0323 -0.7105 1.2305 15 6 2.1608 -0.0131 2.4171 16 6 2.6232 -0.6757 3.5435 17 6 2.9357 -2.0232 3.4349 18 35 3.5647 -2.9843 4.9371 19 6 2.7864 -2.6529 2.2130 20 7 2.3436 -1.9899 1.1625 21 1 -0.3633 0.5139 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 2.9172 -1.1205 -1.0288 25 1 1.0870 0.6163 -2.5525 26 1 2.7588 1.0462 -2.1182 27 1 2.5286 1.8737 -5.6994 28 1 1.9034 1.0346 2.4661 29 1 2.7333 -0.1565 4.4840 30 1 3.0308 -3.7007 2.1189 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411675278.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:41 Heat of formation + Delta-G solvation = 34.763310 kcal Electronic energy + Delta-G solvation = -14277.182369 eV Core-core repulsion = 11732.493326 eV Total energy + Delta-G solvation = -2544.689043 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.39444 -36.16914 -33.24329 -32.69308 -31.88674 -30.18238 -28.60285 -26.15083 -24.01386 -23.54519 -21.68069 -20.20118 -17.17965 -16.63236 -16.06471 -15.39747 -14.68707 -14.59918 -14.27423 -13.76614 -13.40179 -12.89503 -12.46474 -12.24788 -11.70199 -11.60095 -11.51686 -11.14401 -10.87711 -10.71474 -10.60834 -10.45339 -9.92187 -9.88255 -9.41387 -9.16696 -8.83447 -8.45301 -7.25729 -6.01168 -4.02337 0.79029 1.10543 1.36098 3.36341 3.39556 3.43471 3.61216 4.26653 4.43064 4.55078 4.63521 4.79365 5.17353 5.29252 5.35154 5.52402 5.67008 5.75675 5.82343 5.88274 6.19555 6.34221 6.45385 6.69151 7.24057 7.42273 7.79195 7.93435 8.16122 8.44923 8.64780 9.07193 9.62416 11.10052 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.036693 B = 0.003464 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.902165 B = 8080.103528 C = 8597.310958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.127 3.873 3 H 0.055 0.945 4 N -0.671 5.671 5 C 0.192 3.808 6 C -0.512 4.512 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.899 3.101 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.156 3.844 15 C -0.166 4.166 16 C -0.047 4.047 17 C -0.160 4.160 18 Br -0.046 7.046 19 C 0.136 3.864 20 N -0.447 5.447 21 H 0.046 0.954 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.337 0.663 25 H 0.030 0.970 26 H -0.015 1.015 27 H 0.261 0.739 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.726 -5.213 22.132 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.016 3.984 3 H 0.072 0.928 4 N -0.303 5.303 5 C 0.066 3.934 6 C -0.551 4.551 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.727 3.273 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.203 1.203 14 C 0.018 3.982 15 C -0.188 4.188 16 C -0.074 4.074 17 C -0.241 4.241 18 Br 0.038 6.962 19 C -0.024 4.024 20 N -0.156 5.156 21 H 0.065 0.935 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.155 0.845 25 H 0.048 0.952 26 H 0.002 0.998 27 H 0.071 0.929 28 H 0.161 0.839 29 H 0.159 0.841 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.238 -6.096 21.567 22.413 hybrid contribution 1.090 0.827 -0.077 1.370 sum 1.328 -5.270 21.490 22.166 Atomic orbital electron populations 1.21739 0.93476 1.02448 1.01194 1.20521 0.96307 0.94639 0.86961 0.92752 1.60636 1.33553 1.33688 1.02427 1.19647 0.96497 0.90173 0.87088 1.21148 1.43169 0.96812 0.93946 0.91912 1.24977 0.95681 0.94898 0.98978 1.69953 1.48970 1.09017 1.25984 0.86539 0.79376 0.79497 0.81861 1.20114 1.21389 1.20292 1.21885 0.91185 0.89896 0.95209 1.22042 1.01903 1.01992 0.92831 1.21491 0.94366 0.92201 0.99383 1.22936 1.09657 0.96674 0.94841 1.96702 1.87318 1.74185 1.37995 1.22960 0.92860 1.00337 0.86222 1.67769 1.09726 1.08563 1.29514 0.93517 0.91289 0.91990 0.84452 0.95204 0.99764 0.92904 0.83904 0.84076 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.40 37.16 0.35 -1.75 16 2 C 0.13 2.24 2.86 -68.87 -0.20 2.04 16 3 H 0.05 0.95 7.77 -51.93 -0.40 0.55 16 4 N -0.67 -14.71 6.04 -109.23 -0.66 -15.37 16 5 C 0.19 5.04 5.24 -4.98 -0.03 5.01 16 6 C -0.51 -14.68 9.32 -34.44 -0.32 -15.00 16 7 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 10 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.16 2.41 5.70 -82.58 -0.47 1.94 16 15 C -0.17 -2.03 9.76 -39.44 -0.39 -2.41 16 16 C -0.05 -0.51 9.94 -39.25 -0.39 -0.90 16 17 C -0.16 -1.84 6.25 -39.38 -0.25 -2.09 16 18 Br -0.05 -0.45 33.74 -68.01 -2.29 -2.74 16 19 C 0.14 1.79 10.94 -17.52 -0.19 1.60 16 20 N -0.45 -7.20 9.28 -9.45 -0.09 -7.28 16 21 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 22 H 0.07 1.20 7.45 -51.93 -0.39 0.81 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.34 7.45 7.84 -39.29 -0.31 7.14 16 25 H 0.03 0.83 7.44 -51.93 -0.39 0.44 16 26 H -0.02 -0.42 8.06 -51.93 -0.42 -0.84 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 30 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 283.21 15.07 4.27 4.27 Total: -1.00 -30.42 283.21 -8.60 -39.01 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -3.56 Total: 1.43 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -1.98 Total: -10.05 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.01 Total: -48.81 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -2.29 Total: -2.74 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.42 -8.60 -39.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411675278.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.778 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds