Wall clock time and date at job start Tue Mar 31 2020 06:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00441 * 2 1 4 4 H 1.48496 * 109.47452 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46916 * 300.00103 * 3 2 1 6 6 H 1.48501 * 109.47102 * 59.99537 * 3 2 1 7 7 C 1.37882 * 119.99464 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99892 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00339 * 0.02562 * 7 2 1 10 10 S 1.81396 * 109.47165 * 179.97438 * 9 7 2 11 11 C 1.81397 * 103.00087 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.47029 * 179.97438 * 11 10 9 13 13 C 1.38139 * 119.98756 * 270.24647 * 12 11 10 14 14 C 1.38437 * 120.00008 * 180.31431 * 13 12 11 15 15 F 1.35104 * 119.97906 * 179.78297 * 14 13 12 16 16 C 1.38433 * 120.03445 * 359.51623 * 14 13 12 17 17 C 1.38221 * 120.09088 * 0.22139 * 16 14 13 18 18 C 1.38618 * 119.93767 * 359.96906 * 17 16 14 19 19 O 1.36033 * 120.52376 * 180.22558 * 18 17 16 20 20 C 1.43045 * 116.85617 * 343.41162 * 19 18 17 21 21 O 1.43263 * 108.60323 * 47.45732 * 20 19 18 22 22 C 1.43079 * 113.03230 * 294.51845 * 21 20 19 23 23 H 0.97003 * 119.99927 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46871 * 59.99978 * 9 7 2 25 25 H 1.09000 * 109.47060 * 299.99820 * 9 7 2 26 26 H 1.08995 * 109.47317 * 60.00007 * 11 10 9 27 27 H 1.08995 * 109.47230 * 299.99650 * 11 10 9 28 28 H 1.07997 * 119.99559 * 0.05408 * 13 12 11 29 29 H 1.08004 * 119.95615 * 180.25055 * 16 14 13 30 30 H 1.08996 * 109.61516 * 287.72140 * 20 19 18 31 31 H 1.09004 * 109.61763 * 167.19270 * 20 19 18 32 32 H 1.08997 * 109.49468 * 288.65888 * 22 21 20 33 33 H 1.08991 * 109.53127 * 168.56663 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 16 2.4296 -3.8780 0.0005 11 6 1.3513 -5.3367 0.0013 12 6 2.1952 -6.5853 0.0008 13 6 2.5853 -7.1544 -1.1959 14 6 3.3551 -8.3050 -1.1968 15 9 3.7327 -8.8638 -2.3675 16 6 3.7428 -8.8802 0.0012 17 6 3.3585 -8.3098 1.2002 18 6 2.5844 -7.1599 1.2026 19 8 2.2033 -6.5860 2.3756 20 6 2.3109 -7.3904 3.5535 21 8 3.6018 -8.0116 3.5664 22 6 3.7837 -8.9469 2.4990 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 0.7218 -5.3237 -0.8884 27 1 0.7224 -5.3232 0.8915 28 1 2.2862 -6.7041 -2.1309 29 1 4.3468 -9.7756 -0.0009 30 1 1.5361 -8.1570 3.5452 31 1 2.1982 -6.7623 4.4372 32 1 3.1775 -9.8334 2.6850 33 1 4.8343 -9.2306 2.4382 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013927.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:04 Heat of formation + Delta-G solvation = -113.726400 kcal Electronic energy + Delta-G solvation = -19391.256599 eV Core-core repulsion = 16036.679990 eV Total energy + Delta-G solvation = -3354.576609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.88925 -41.10412 -38.05689 -36.57821 -33.15532 -33.10330 -30.82642 -28.53849 -27.25705 -26.74425 -25.95581 -23.11419 -21.77589 -21.22969 -18.72923 -17.63843 -17.39968 -16.55163 -16.26433 -15.82951 -15.48335 -15.29315 -15.21579 -14.64609 -14.50813 -14.27145 -13.96400 -13.46041 -13.20862 -12.77777 -12.67994 -12.39048 -12.23199 -11.96993 -11.73133 -11.29440 -10.95683 -10.87932 -10.71607 -10.43273 -10.11644 -9.55836 -8.95867 -8.76082 -8.60202 -8.14305 -6.63493 -6.17830 -4.21551 0.86828 1.03390 2.63384 3.00084 3.26501 3.32415 3.33719 3.40393 3.55077 3.87020 4.00171 4.35972 4.37642 4.41037 4.52381 4.86955 4.94032 4.99706 5.05152 5.19516 5.20496 5.36081 5.42165 5.59330 5.86355 5.93372 6.03590 6.20217 6.38944 6.59995 7.11647 7.13680 7.17247 7.77289 8.03381 8.80600 9.41357 10.93568 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.020991 B = 0.004127 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.558557 B = 6782.139911 C = 7631.632593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.088 3.912 10 S -0.289 6.289 11 C -0.049 4.049 12 C -0.050 4.050 13 C -0.102 4.102 14 C 0.070 3.930 15 F -0.140 7.140 16 C -0.114 4.114 17 C -0.181 4.181 18 C 0.140 3.860 19 O -0.310 6.310 20 C 0.221 3.779 21 O -0.384 6.384 22 C 0.106 3.894 23 H 0.264 0.736 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.147 0.853 29 H 0.139 0.861 30 H 0.062 0.938 31 H 0.145 0.855 32 H 0.074 0.926 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.487 -20.283 3.693 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.549 4.549 8 H 0.086 0.914 9 C -0.059 4.059 10 S -0.060 6.060 11 C -0.196 4.196 12 C -0.052 4.052 13 C -0.123 4.123 14 C 0.050 3.950 15 F -0.119 7.119 16 C -0.134 4.134 17 C -0.182 4.182 18 C 0.093 3.907 19 O -0.225 6.225 20 C 0.108 3.892 21 O -0.303 6.303 22 C 0.030 3.970 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.164 0.836 29 H 0.157 0.843 30 H 0.080 0.920 31 H 0.162 0.838 32 H 0.091 0.909 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.491 -19.880 3.844 20.740 hybrid contribution -1.037 0.552 -0.359 1.228 sum 3.455 -19.328 3.484 19.941 Atomic orbital electron populations 1.69964 1.06137 1.27180 1.49911 1.24959 0.94965 0.99250 0.94690 0.86302 0.80137 0.82555 0.77711 1.19405 1.20746 1.20730 1.20720 0.93516 0.88707 1.51975 0.91438 1.21077 0.93811 0.90903 1.00067 1.86879 1.20284 1.00825 1.97992 1.22025 0.99021 0.93245 1.05344 1.18704 1.00048 0.96672 0.89778 1.20926 0.97986 0.94479 0.98895 1.17359 1.01378 0.95029 0.81212 1.91492 1.89897 1.84629 1.45837 1.20574 1.01711 1.01145 0.89970 1.20030 1.03009 0.98508 0.96657 1.18266 0.94422 0.92009 0.85969 1.86421 1.80666 1.41602 1.13840 1.24533 0.84784 0.91952 0.87922 1.88302 1.35336 1.57898 1.48803 1.21502 1.03048 0.90485 0.82002 0.92592 0.94636 0.94550 0.89665 0.89172 0.83553 0.84318 0.92041 0.83783 0.90857 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.91 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.59 9.13 -34.44 -0.31 -14.90 16 8 H 0.07 1.95 7.71 -52.48 -0.40 1.54 16 9 C 0.09 2.32 5.70 36.00 0.21 2.53 16 10 S -0.29 -6.48 21.64 -107.50 -2.33 -8.81 16 11 C -0.05 -0.86 5.83 36.01 0.21 -0.65 16 12 C -0.05 -0.78 5.15 -104.46 -0.54 -1.32 16 13 C -0.10 -1.43 9.68 -39.54 -0.38 -1.82 16 14 C 0.07 0.90 7.30 -39.44 -0.29 0.61 16 15 F -0.14 -1.81 17.27 2.25 0.04 -1.77 16 16 C -0.11 -1.27 9.69 -39.52 -0.38 -1.65 16 17 C -0.18 -2.17 5.82 -104.45 -0.61 -2.78 16 18 C 0.14 2.07 6.53 -39.24 -0.26 1.81 16 19 O -0.31 -4.62 9.49 -43.73 -0.41 -5.03 16 20 C 0.22 2.32 7.95 101.05 0.80 3.13 16 21 O -0.38 -4.40 10.97 -59.11 -0.65 -5.05 16 22 C 0.11 0.98 6.87 36.05 0.25 1.23 16 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 25 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 26 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 27 H 0.09 1.57 7.51 -51.93 -0.39 1.18 16 28 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 30 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 31 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 305.17 15.07 4.60 4.60 Total: -1.00 -31.91 305.17 -8.17 -40.07 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -3.73 Total: -3.10 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -1.40 Total: -12.08 kcal Atomic # 7 Polarization: -26.13 SS G_CDS: 0.74 Total: -25.40 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -1.06 Total: -10.08 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -6.48 SS G_CDS: -2.33 Total: -8.81 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.91 -8.17 -40.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013927.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.652 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds