Wall clock time and date at job start Tue Mar 31 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34880 * 117.00153 * 2 1 4 4 O 1.21605 * 120.00046 * 359.97438 * 3 2 1 5 5 C 1.46507 * 119.99851 * 180.02562 * 3 2 1 6 6 C 1.36757 * 126.17816 * 0.02562 * 5 3 2 7 7 N 1.30915 * 113.93133 * 180.02562 * 6 5 3 8 8 C 1.29388 * 117.46836 * 0.02562 * 7 6 5 9 9 C 1.50698 * 124.70616 * 179.97438 * 8 7 6 10 10 H 1.09008 * 109.46853 * 195.02134 * 9 8 7 11 11 C 1.52996 * 109.47387 * 75.02006 * 9 8 7 12 12 N 1.46500 * 109.47318 * 315.01752 * 9 8 7 13 13 C 1.34773 * 120.00431 * 205.00474 * 12 9 8 14 14 O 1.21693 * 119.99830 * 359.97438 * 13 12 9 15 15 C 1.46368 * 120.00188 * 179.72417 * 13 12 9 16 16 H 1.08001 * 120.00155 * 0.27756 * 15 13 12 17 17 C 1.40047 * 120.00322 * 180.27118 * 15 13 12 18 18 N 1.30674 * 119.99675 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 120.00219 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47294 * 90.00321 * 19 17 15 21 21 H 1.48499 * 109.47218 * 210.00181 * 19 17 15 22 22 H 1.48496 * 109.47166 * 330.00013 * 19 17 15 23 23 S 1.70931 * 110.58665 * 0.23577 * 8 7 6 24 24 H 1.09007 * 109.47249 * 59.99659 * 1 2 3 25 25 H 1.08991 * 109.47557 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47002 * 300.00280 * 1 2 3 27 27 H 1.08004 * 123.03604 * 0.04608 * 6 5 3 28 28 H 1.08994 * 109.47099 * 300.00014 * 11 9 8 29 29 H 1.09003 * 109.47061 * 60.00007 * 11 9 8 30 30 H 1.09004 * 109.47132 * 179.97438 * 11 9 8 31 31 H 0.97000 * 119.99456 * 25.00037 * 12 9 8 32 32 H 0.96999 * 119.99862 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4021 2.2217 -0.0005 5 6 3.5274 1.2784 -0.0006 6 6 4.3913 0.2182 -0.0016 7 7 5.6544 0.5624 -0.0014 8 6 5.9283 1.8270 0.0003 9 6 7.3208 2.4032 0.0013 10 1 7.2769 3.4590 0.2690 11 6 7.9350 2.2555 -1.3921 12 7 8.1454 1.6860 0.9770 13 6 9.2174 2.2899 1.5269 14 8 9.5007 3.4309 1.2126 15 6 10.0377 1.5755 2.5062 16 1 9.7866 0.5627 2.7848 17 6 11.1484 2.2050 3.0818 18 7 11.4521 3.4305 2.7450 19 14 12.1957 1.2929 4.3310 20 1 13.2838 0.5664 3.6286 21 1 12.7858 2.2649 5.2861 22 1 11.3501 0.3225 5.0715 23 16 4.4917 2.7532 0.0084 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 4.0613 -0.8102 -0.0029 28 1 7.9789 1.1998 -1.6598 29 1 7.3215 2.7892 -2.1180 30 1 8.9420 2.6727 -1.3914 31 1 7.9197 0.7764 1.2273 32 1 12.2211 3.8667 3.1439 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424973893.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:40 Heat of formation + Delta-G solvation = -78.605693 kcal Electronic energy + Delta-G solvation = -19179.260228 eV Core-core repulsion = 15846.126528 eV Total energy + Delta-G solvation = -3333.133699 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.62019 -39.71134 -37.51882 -36.64490 -34.42085 -32.45281 -30.97611 -29.71610 -27.73378 -26.21904 -25.97809 -23.02201 -22.21181 -20.43767 -19.18478 -18.52958 -17.61591 -16.98061 -16.65596 -16.63936 -15.43775 -14.98561 -14.71886 -14.56004 -14.14329 -13.74117 -13.52911 -13.26594 -12.99999 -12.51904 -12.41186 -11.80593 -11.73399 -11.62183 -11.17730 -11.10834 -11.06937 -11.04459 -10.83956 -10.50168 -10.26128 -9.70287 -9.61959 -9.03772 -8.89065 -7.72251 -7.66480 -6.23856 -4.69129 0.00952 0.91127 1.55103 2.11139 2.60468 2.85742 3.12883 3.20063 3.23548 4.00430 4.07871 4.52330 4.58530 4.74046 4.80201 4.88257 4.93358 5.03975 5.22514 5.52560 5.63961 5.86082 5.91708 5.99033 6.08566 6.32667 6.66453 7.39741 7.40262 7.55041 7.85077 7.97108 8.27825 8.98049 9.43803 10.52578 10.70455 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.031689 B = 0.003504 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.379449 B = 7988.012360 C = 8366.964909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.350 6.350 3 C 0.553 3.447 4 O -0.508 6.508 5 C -0.326 4.326 6 C 0.138 3.862 7 N -0.478 5.478 8 C 0.073 3.927 9 C 0.223 3.777 10 H 0.099 0.901 11 C -0.151 4.151 12 N -0.752 5.752 13 C 0.556 3.444 14 O -0.579 6.579 15 C -0.541 4.541 16 H 0.069 0.931 17 C 0.088 3.912 18 N -0.766 5.766 19 Si 0.909 3.091 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.265 1.265 23 S 0.245 5.755 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.190 0.810 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.390 0.610 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.964 -6.617 -5.889 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.267 6.267 3 C 0.397 3.603 4 O -0.398 6.398 5 C -0.448 4.448 6 C -0.024 4.024 7 N -0.191 5.191 8 C -0.200 4.200 9 C 0.113 3.887 10 H 0.117 0.883 11 C -0.211 4.211 12 N -0.409 5.409 13 C 0.361 3.639 14 O -0.462 6.462 15 C -0.578 4.578 16 H 0.087 0.913 17 C -0.132 4.132 18 N -0.395 5.395 19 Si 0.734 3.266 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.189 1.189 23 S 0.506 5.494 24 H 0.083 0.917 25 H 0.123 0.877 26 H 0.083 0.917 27 H 0.207 0.793 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.223 0.777 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.604 -4.506 -6.073 18.245 hybrid contribution -0.223 -1.866 0.729 2.016 sum -16.827 -6.373 -5.343 18.770 Atomic orbital electron populations 1.23317 0.75529 1.03914 1.02785 1.86567 1.23737 1.31825 1.84530 1.19359 0.86601 0.81768 0.72606 1.90903 1.66512 1.35733 1.46615 1.24924 0.95562 0.98848 1.25491 1.22735 0.85810 1.00395 0.93416 1.66121 1.19552 1.16188 1.17268 1.28392 1.02226 0.92164 0.97237 1.19225 0.80559 0.96968 0.91992 0.88281 1.22180 1.02260 1.02323 0.94381 1.46249 1.30725 1.17688 1.46198 1.18275 0.78538 0.86144 0.80967 1.90605 1.71330 1.19021 1.65222 1.20853 1.11544 1.00962 1.24424 0.91273 1.25705 0.96956 0.94447 0.96130 1.70012 1.22828 1.11072 1.35583 0.86344 0.80115 0.79781 0.80376 1.19688 1.20454 1.18879 1.84167 0.95805 1.06465 1.62968 0.91714 0.87735 0.91668 0.79346 0.92075 0.92914 0.90227 0.77702 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.34 16 2 O -0.35 -3.71 10.37 -40.98 -0.42 -4.13 16 3 C 0.55 7.21 7.92 34.06 0.27 7.48 16 4 O -0.51 -7.69 16.76 -19.35 -0.32 -8.01 16 5 C -0.33 -4.31 6.51 -36.79 -0.24 -4.55 16 6 C 0.14 1.75 11.20 -18.48 -0.21 1.55 16 7 N -0.48 -7.23 10.10 -11.26 -0.11 -7.34 16 8 C 0.07 1.15 6.20 -13.31 -0.08 1.07 16 9 C 0.22 4.11 3.07 -69.09 -0.21 3.90 16 10 H 0.10 1.95 7.57 -51.92 -0.39 1.55 16 11 C -0.15 -2.53 9.47 37.16 0.35 -2.18 16 12 N -0.75 -16.49 5.06 -56.35 -0.29 -16.78 16 13 C 0.56 15.26 7.71 -12.99 -0.10 15.16 16 14 O -0.58 -17.83 14.68 5.20 0.08 -17.75 16 15 C -0.54 -14.98 9.54 -35.63 -0.34 -15.32 16 16 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 17 C 0.09 2.40 5.50 -17.37 -0.10 2.30 16 18 N -0.77 -22.44 11.83 55.55 0.66 -21.78 16 19 Si 0.91 19.85 29.56 -169.99 -5.02 14.83 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 22 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 23 S 0.25 3.37 23.00 -107.50 -2.47 0.89 16 24 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 25 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.19 1.82 8.06 -52.48 -0.42 1.40 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.39 8.02 8.26 -40.82 -0.34 7.69 16 32 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 LS Contribution 309.25 15.07 4.66 4.66 Total: -1.00 -33.92 309.25 -6.07 -39.99 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -3.24 Total: 4.67 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 0.41 Total: 10.75 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.26 Total: -45.90 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.67 Total: -29.90 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -2.47 Total: 0.89 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.92 -6.07 -39.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424973893.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.616 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds