Wall clock time and date at job start Tue Mar 31 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34876 * 116.99943 * 2 1 4 4 O 1.21610 * 120.00267 * 0.02562 * 3 2 1 5 5 C 1.46502 * 119.99919 * 180.02562 * 3 2 1 6 6 C 1.36756 * 126.18008 * 0.02562 * 5 3 2 7 7 N 1.30908 * 113.93462 * 179.76885 * 6 5 3 8 8 C 1.29400 * 117.46617 * 0.44017 * 7 6 5 9 9 C 1.50701 * 124.70568 * 179.83525 * 8 7 6 10 10 H 1.09004 * 109.47150 * 164.70012 * 9 8 7 11 11 C 1.52997 * 109.47247 * 284.69727 * 9 8 7 12 12 N 1.46498 * 109.47114 * 44.69693 * 9 8 7 13 13 C 1.34777 * 119.99828 * 154.72036 * 12 9 8 14 14 O 1.21693 * 120.00014 * 0.28042 * 13 12 9 15 15 C 1.46373 * 120.00147 * 180.27610 * 13 12 9 16 16 H 1.08002 * 120.00141 * 0.02562 * 15 13 12 17 17 C 1.40050 * 120.00087 * 179.97438 * 15 13 12 18 18 N 1.30664 * 120.00145 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99913 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46768 * 60.00340 * 19 17 15 21 21 H 1.48498 * 109.47326 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47374 * 300.00617 * 19 17 15 23 23 S 1.70919 * 110.58637 * 359.57279 * 8 7 6 24 24 H 1.08997 * 109.47044 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46693 * 299.99663 * 1 2 3 26 26 H 1.08994 * 109.47312 * 59.99395 * 1 2 3 27 27 H 1.08002 * 123.03057 * 359.97438 * 6 5 3 28 28 H 1.09009 * 109.47238 * 60.00212 * 11 9 8 29 29 H 1.08997 * 109.47293 * 180.02562 * 11 9 8 30 30 H 1.09003 * 109.47189 * 300.00333 * 11 9 8 31 31 H 0.97001 * 120.00384 * 335.00482 * 12 9 8 32 32 H 0.96996 * 120.00325 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4020 2.2217 0.0005 5 6 3.5273 1.2784 -0.0006 6 6 4.3913 0.2183 -0.0016 7 7 5.6543 0.5626 -0.0068 8 6 5.9283 1.8272 -0.0013 9 6 7.3207 2.4035 -0.0023 10 1 7.2766 3.4597 -0.2682 11 6 7.9358 2.2536 1.3905 12 7 8.1447 1.6879 -0.9796 13 6 9.2131 2.2948 -1.5333 14 8 9.4964 3.4354 -1.2176 15 6 10.0329 1.5819 -2.5143 16 1 9.7814 0.5697 -2.7947 17 6 11.1429 2.2127 -3.0900 18 7 11.4470 3.4375 -2.7511 19 14 12.1895 1.3027 -4.3414 20 1 11.3497 0.9214 -5.5053 21 1 13.2956 2.1832 -4.7957 22 1 12.7554 0.0797 -3.7176 23 16 4.4917 2.7533 -0.0001 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 4.0613 -0.8100 -0.0017 28 1 7.9799 1.1974 1.6565 29 1 8.9427 2.6708 1.3899 30 1 7.3227 2.7860 2.1177 31 1 7.9189 0.7787 -1.2313 32 1 12.2159 3.8743 -3.1496 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424973899.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:42 Heat of formation + Delta-G solvation = -78.582412 kcal Electronic energy + Delta-G solvation = -19179.319580 eV Core-core repulsion = 15846.186890 eV Total energy + Delta-G solvation = -3333.132690 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61957 -39.71061 -37.51741 -36.64392 -34.42053 -32.45299 -30.97498 -29.71691 -27.73382 -26.21827 -25.97773 -23.01984 -22.21148 -20.43839 -19.18400 -18.52892 -17.61542 -16.97969 -16.65551 -16.63908 -15.43425 -14.98262 -14.71894 -14.56290 -14.14782 -13.73862 -13.53097 -13.26580 -12.99882 -12.51900 -12.40503 -11.80395 -11.73448 -11.62197 -11.19257 -11.10844 -11.04928 -11.04435 -10.83561 -10.49590 -10.28979 -9.70241 -9.61966 -9.03649 -8.88306 -7.72218 -7.66628 -6.23582 -4.69094 0.00936 0.91118 1.55110 2.11158 2.60477 2.85773 3.14867 3.19834 3.21788 4.00432 4.07948 4.52458 4.58561 4.74083 4.80187 4.88277 4.93366 5.04007 5.22501 5.52634 5.63965 5.86102 5.91705 5.99024 6.08533 6.32613 6.66416 7.39725 7.40255 7.55039 7.85168 7.97147 8.27598 8.98014 9.43892 10.52756 10.70599 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.031661 B = 0.003505 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.162924 B = 7985.886423 C = 8365.583118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.350 6.350 3 C 0.553 3.447 4 O -0.508 6.508 5 C -0.326 4.326 6 C 0.138 3.862 7 N -0.478 5.478 8 C 0.073 3.927 9 C 0.223 3.777 10 H 0.099 0.901 11 C -0.151 4.151 12 N -0.752 5.752 13 C 0.556 3.444 14 O -0.579 6.579 15 C -0.541 4.541 16 H 0.069 0.931 17 C 0.088 3.912 18 N -0.767 5.767 19 Si 0.909 3.091 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.267 1.267 23 S 0.245 5.755 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.190 0.810 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.390 0.610 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.944 -6.622 5.922 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.267 6.267 3 C 0.397 3.603 4 O -0.398 6.398 5 C -0.448 4.448 6 C -0.024 4.024 7 N -0.191 5.191 8 C -0.200 4.200 9 C 0.113 3.887 10 H 0.117 0.883 11 C -0.211 4.211 12 N -0.409 5.409 13 C 0.361 3.639 14 O -0.462 6.462 15 C -0.578 4.578 16 H 0.087 0.913 17 C -0.132 4.132 18 N -0.395 5.395 19 Si 0.734 3.266 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.192 1.192 23 S 0.506 5.494 24 H 0.123 0.877 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.207 0.793 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.223 0.777 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.577 -4.511 6.115 18.236 hybrid contribution -0.236 -1.872 -0.749 2.030 sum -16.813 -6.383 5.366 18.767 Atomic orbital electron populations 1.23318 0.75526 1.03914 1.02785 1.86567 1.23740 1.31822 1.84528 1.19358 0.86602 0.81769 0.72606 1.90904 1.66514 1.35731 1.46620 1.24924 0.95563 0.98842 1.25499 1.22732 0.85813 1.00396 0.93414 1.66123 1.19555 1.16184 1.17270 1.28399 1.02233 0.92165 0.97238 1.19226 0.80555 0.96988 0.91979 0.88274 1.22180 1.02256 1.02322 0.94377 1.46247 1.30960 1.17679 1.45969 1.18268 0.78529 0.86110 0.81000 1.90604 1.71222 1.19057 1.65303 1.20821 1.11625 1.00986 1.24410 0.91315 1.25700 0.96938 0.94446 0.96124 1.69994 1.22926 1.11081 1.35506 0.86405 0.79393 0.79890 0.80917 1.19265 1.20549 1.19216 1.84164 0.95800 1.06460 1.62973 0.87734 0.91714 0.91665 0.79348 0.92078 0.90227 0.92915 0.77696 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.34 16 2 O -0.35 -3.71 10.37 -40.97 -0.42 -4.13 16 3 C 0.55 7.21 7.92 34.06 0.27 7.48 16 4 O -0.51 -7.69 16.76 -19.35 -0.32 -8.02 16 5 C -0.33 -4.31 6.51 -36.79 -0.24 -4.55 16 6 C 0.14 1.76 11.20 -18.48 -0.21 1.55 16 7 N -0.48 -7.23 10.10 -11.26 -0.11 -7.34 16 8 C 0.07 1.15 6.21 -13.30 -0.08 1.07 16 9 C 0.22 4.11 3.07 -69.08 -0.21 3.90 16 10 H 0.10 1.95 7.57 -51.93 -0.39 1.56 16 11 C -0.15 -2.53 9.47 37.16 0.35 -2.17 16 12 N -0.75 -16.50 5.06 -56.35 -0.29 -16.78 16 13 C 0.56 15.27 7.71 -12.99 -0.10 15.17 16 14 O -0.58 -17.83 14.68 5.20 0.08 -17.76 16 15 C -0.54 -15.00 9.54 -35.63 -0.34 -15.34 16 16 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 17 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 18 N -0.77 -22.45 11.83 55.55 0.66 -21.79 16 19 Si 0.91 19.86 29.56 -169.99 -5.02 14.83 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 S 0.25 3.37 23.00 -107.50 -2.47 0.89 16 24 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.19 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.39 8.03 8.26 -40.82 -0.34 7.69 16 32 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 LS Contribution 309.24 15.07 4.66 4.66 Total: -1.00 -33.90 309.24 -6.07 -39.98 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -3.23 Total: 4.71 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 0.41 Total: 10.75 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.26 Total: -45.92 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.67 Total: -29.90 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -2.47 Total: 0.89 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.90 -6.07 -39.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424973899.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.605 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds