Wall clock time and date at job start Tue Mar 31 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99875 * 2 1 4 4 H 1.48501 * 109.47285 * 239.99616 * 3 2 1 5 5 H 1.48494 * 109.47080 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46878 * 119.99780 * 3 2 1 7 7 C 1.37880 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99731 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00154 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46929 * 180.02562 * 9 7 2 11 11 C 1.39834 * 119.99866 * 180.02562 * 10 9 7 12 12 C 1.39396 * 120.08574 * 0.02562 * 11 10 9 13 13 C 1.36008 * 120.70953 * 180.02562 * 12 11 10 14 14 C 1.41186 * 120.65795 * 0.02562 * 13 12 11 15 15 N 1.34765 * 128.80093 * 179.97438 * 14 13 12 16 16 C 1.28011 * 118.12004 * 179.97438 * 15 14 13 17 17 C 1.50699 * 124.78157 * 180.26747 * 16 15 14 18 18 F 1.39894 * 109.47360 * 29.69571 * 17 16 15 19 19 F 1.39900 * 109.46893 * 149.70096 * 17 16 15 20 20 S 1.75829 * 110.43672 * 0.02562 * 16 15 14 21 21 C 1.39861 * 118.43674 * 359.97438 * 14 13 12 22 22 C 1.38245 * 120.08305 * 180.02562 * 11 10 9 23 23 H 0.96999 * 120.00289 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46995 * 60.00578 * 9 7 2 25 25 H 1.08994 * 109.47423 * 300.00714 * 9 7 2 26 26 H 0.97004 * 120.00137 * 0.02562 * 10 9 7 27 27 H 1.08002 * 119.64816 * 0.02562 * 12 11 10 28 28 H 1.08006 * 119.67347 * 180.02562 * 13 12 11 29 29 H 1.08995 * 109.46605 * 269.69444 * 17 16 15 30 30 H 1.07992 * 120.01831 * 359.96979 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7369 -4.9311 -0.0011 12 6 0.3668 -5.1878 -0.0022 13 6 -0.1005 -6.4651 -0.0022 14 6 0.7927 -7.5585 -0.0005 15 7 0.5136 -8.8769 0.0002 16 6 1.4932 -9.7010 0.0012 17 6 1.3543 -11.2016 -0.0037 18 9 0.1727 -11.5584 -0.6623 19 9 2.4476 -11.7689 -0.6670 20 16 3.0237 -8.8354 0.0021 21 6 2.1665 -7.2962 0.0005 22 6 2.6337 -5.9832 -0.0005 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6246 -2.5571 0.8895 26 1 3.1568 -3.4355 -0.0002 27 1 -0.3312 -4.3637 -0.0030 28 1 -1.1655 -6.6448 -0.0034 29 1 1.3227 -11.5668 1.0227 30 1 3.6958 -5.7877 -0.0002 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520398943.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:36 Heat of formation + Delta-G solvation = -48.249129 kcal Electronic energy + Delta-G solvation = -18506.034415 eV Core-core repulsion = 15063.129559 eV Total energy + Delta-G solvation = -3442.904856 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.049 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.22186 -47.24443 -40.11439 -37.60042 -34.60689 -32.68342 -30.95554 -29.86676 -27.72085 -25.88324 -24.02540 -22.36741 -22.31949 -20.47566 -18.52831 -17.80845 -17.64705 -17.29305 -16.74903 -16.00496 -15.46512 -14.92440 -14.57567 -14.47672 -14.08112 -13.67302 -13.59221 -13.47046 -13.34993 -12.98511 -12.70389 -12.43542 -11.98070 -11.89311 -11.54903 -11.06547 -11.00428 -10.66216 -10.33794 -9.99979 -9.70447 -9.61139 -9.50346 -8.69175 -8.14609 -6.86774 -6.36614 -4.43526 0.55149 1.19866 1.41782 1.72389 2.48632 3.13779 3.14908 3.20541 3.21581 3.78593 3.95152 4.00171 4.26251 4.42331 4.61297 4.77843 4.96465 5.01219 5.39046 5.48634 5.68248 5.92828 6.21422 6.31776 6.49235 6.68820 6.93243 7.15682 7.40289 7.60187 7.72255 7.89423 8.30941 8.65109 9.23781 10.73687 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.053157 B = 0.003037 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.617252 B = 9218.600521 C = 9690.503137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.244 3.756 10 N -0.706 5.706 11 C 0.274 3.726 12 C -0.174 4.174 13 C 0.000 4.000 14 C -0.019 4.019 15 N -0.396 5.396 16 C -0.026 4.026 17 C 0.363 3.637 18 F -0.183 7.183 19 F -0.191 7.191 20 S 0.065 5.935 21 C -0.084 4.084 22 C -0.201 4.201 23 H 0.269 0.731 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.398 0.602 27 H 0.144 0.856 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.440 -17.241 1.444 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.123 3.877 10 N -0.325 5.325 11 C 0.156 3.844 12 C -0.198 4.198 13 C -0.022 4.022 14 C -0.140 4.140 15 N -0.107 5.107 16 C -0.312 4.312 17 C 0.306 3.694 18 F -0.164 7.164 19 F -0.172 7.172 20 S 0.317 5.683 21 C -0.203 4.203 22 C -0.233 4.233 23 H 0.078 0.922 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.232 0.768 27 H 0.162 0.838 28 H 0.152 0.848 29 H 0.154 0.846 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.581 -17.440 1.410 17.859 hybrid contribution 0.201 1.675 -0.146 1.693 sum 3.781 -15.764 1.264 16.261 Atomic orbital electron populations 1.69915 1.06108 1.27813 1.48542 1.24922 0.94974 0.99567 0.94323 0.86427 0.79451 0.81984 0.78854 1.19956 1.20923 1.19967 1.21098 0.93399 0.90166 1.53796 0.91828 1.19323 0.88653 0.82457 0.97271 1.45865 1.10482 1.02313 1.73803 1.17983 0.92518 0.85601 0.88283 1.20522 0.94417 0.97113 1.07708 1.20212 0.98785 0.89207 0.94014 1.18719 0.91156 0.88620 1.15484 1.65649 1.33862 1.02133 1.09070 1.27400 0.92069 0.98988 1.12739 1.19586 0.71772 0.84533 0.93554 1.93048 1.47458 1.92183 1.83722 1.93041 1.54798 1.85510 1.83833 1.84750 1.09234 0.96628 1.77710 1.23276 0.95912 0.97475 1.03655 1.19468 0.99094 0.88229 1.16494 0.92158 0.95408 0.95415 0.76793 0.83833 0.84832 0.84625 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.09 13.29 55.43 0.74 -23.36 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 19.85 29.54 -169.99 -5.02 14.83 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.55 -13.75 9.28 -34.44 -0.32 -14.07 16 8 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 9 C 0.24 5.58 4.67 -5.19 -0.02 5.56 16 10 N -0.71 -13.28 5.73 -59.81 -0.34 -13.62 16 11 C 0.27 4.73 6.65 -83.77 -0.56 4.17 16 12 C -0.17 -2.91 9.22 -39.95 -0.37 -3.27 16 13 C 0.00 0.00 10.04 -39.26 -0.39 -0.40 16 14 C -0.02 -0.32 6.95 -84.85 -0.59 -0.91 16 15 N -0.40 -6.30 10.43 -7.77 -0.08 -6.38 16 16 C -0.03 -0.36 7.18 -13.87 -0.10 -0.46 16 17 C 0.36 3.79 5.85 36.00 0.21 4.00 16 18 F -0.18 -2.26 17.23 2.25 0.04 -2.22 16 19 F -0.19 -2.07 17.05 2.25 0.04 -2.03 16 20 S 0.06 0.86 23.07 -107.50 -2.48 -1.62 16 21 C -0.08 -1.33 6.53 -38.55 -0.25 -1.58 16 22 C -0.20 -3.18 9.92 -39.16 -0.39 -3.57 16 23 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 24 H 0.03 0.68 7.95 -51.93 -0.41 0.27 16 25 H 0.03 0.68 7.95 -51.93 -0.41 0.27 16 26 H 0.40 6.88 8.33 -40.82 -0.34 6.54 16 27 H 0.14 2.43 6.72 -52.49 -0.35 2.08 16 28 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 29 H 0.14 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 290.50 15.07 4.38 4.38 Total: -1.00 -27.83 290.50 -7.93 -35.77 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -2.32 Total: 3.16 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -2.88 Total: -8.90 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.31 Total: -43.36 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.08 Total: -4.26 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.48 Total: -1.62 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.83 -7.93 -35.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520398943.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.482 kcal (2) G-P(sol) polarization free energy of solvation -27.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds