Wall clock time and date at job start Tue Mar 31 2020 05:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00061 * 2 1 4 4 H 1.48503 * 109.46908 * 269.99782 * 3 2 1 5 5 H 1.48498 * 109.46902 * 29.99787 * 3 2 1 6 6 H 1.48506 * 109.46999 * 149.99727 * 3 2 1 7 7 C 1.37885 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99835 * 0.27365 * 7 2 1 10 10 O 1.42901 * 110.28680 * 299.05367 * 9 7 2 11 11 C 1.54262 * 110.31949 * 61.18139 * 9 7 2 12 12 C 1.54378 * 105.05536 * 118.89535 * 11 9 7 13 13 N 1.48555 * 104.59999 * 23.84920 * 12 11 9 14 14 C 1.40786 * 111.00383 * 200.95868 * 13 12 11 15 15 C 1.38765 * 122.60585 * 64.07213 * 14 13 12 16 16 C 1.33427 * 114.87592 * 179.76028 * 15 14 13 17 17 S 1.75859 * 109.68890 * 0.48026 * 16 15 14 18 18 C 1.33749 * 122.61072 * 244.36120 * 14 13 12 19 19 N 1.48075 * 125.19614 * 0.02562 * 18 14 13 20 20 O 1.21802 * 120.00366 * 5.86386 * 19 18 14 21 21 O 1.21802 * 119.99919 * 185.86518 * 19 18 14 22 22 C 1.48559 * 104.22118 * 320.51694 * 13 12 11 23 23 H 0.97000 * 120.00225 * 0.02562 * 1 2 3 24 24 H 0.96704 * 114.00101 * 59.30255 * 10 9 7 25 25 H 1.08993 * 110.32220 * 237.78697 * 11 9 7 26 26 H 1.08990 * 110.32571 * 359.97438 * 11 9 7 27 27 H 1.08998 * 110.41054 * 142.63098 * 12 11 9 28 28 H 1.08999 * 110.41212 * 264.95043 * 12 11 9 29 29 H 1.07998 * 122.56531 * 359.97438 * 15 14 13 30 30 H 1.08000 * 125.15228 * 180.20490 * 16 15 14 31 31 H 1.09002 * 110.41424 * 280.70217 * 22 13 12 32 32 H 1.09003 * 110.41264 * 158.25523 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 -0.0051 10 8 0.4347 -2.6051 1.1630 11 6 0.3845 -2.6120 -1.2764 12 6 0.9179 -3.8576 -2.0161 13 7 1.5551 -4.6790 -0.9549 14 6 2.4813 -5.5849 -1.5058 15 6 3.6288 -5.1712 -2.1674 16 6 4.4006 -6.1594 -2.6238 17 16 3.6712 -7.7106 -2.2308 18 6 2.3209 -6.9109 -1.4371 19 7 1.1804 -7.6003 -0.7918 20 8 0.2413 -6.9538 -0.3632 21 8 1.1812 -8.8141 -0.6896 22 6 2.2350 -3.6861 -0.0838 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2184 -1.8974 1.2520 25 1 -0.6632 -2.7500 -1.0094 26 1 0.5038 -1.7233 -1.8960 27 1 0.0971 -4.4052 -2.4792 28 1 1.6523 -3.5680 -2.7676 29 1 3.8799 -4.1292 -2.2998 30 1 5.3299 -6.0266 -3.1578 31 1 3.1772 -3.3698 -0.5314 32 1 2.4059 -4.1045 0.9082 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591974777.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:57 Heat of formation + Delta-G solvation = 3.365750 kcal Electronic energy + Delta-G solvation = -20652.187625 eV Core-core repulsion = 17322.608474 eV Total energy + Delta-G solvation = -3329.579151 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.67919 -39.83820 -37.11263 -36.08525 -34.26696 -32.20755 -31.00000 -29.21782 -28.15131 -25.80858 -24.54078 -23.21984 -21.53373 -20.03104 -19.64155 -19.02769 -17.82741 -17.21744 -17.10364 -16.46133 -15.60978 -15.21486 -14.88980 -14.16921 -13.96933 -13.55167 -13.20505 -12.83756 -12.45979 -12.21035 -11.60875 -11.43827 -11.39441 -11.20717 -11.12947 -10.90212 -10.75350 -10.71856 -10.66197 -10.50865 -10.04108 -9.54748 -9.29271 -8.76070 -8.67918 -8.34338 -8.13618 -6.30155 -4.40546 -0.19240 0.61235 1.29801 1.35202 1.91507 2.22715 3.14579 3.23570 3.25948 4.09463 4.24934 4.53754 4.77942 4.97352 5.16860 5.50736 5.57155 5.64781 5.69986 5.86710 5.94447 6.19537 6.39739 6.57096 6.68522 6.87923 7.06363 7.30569 7.34613 7.45003 7.69661 7.99085 8.05289 8.61963 9.29057 9.49914 10.76289 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.027594 B = 0.005202 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.481435 B = 5380.934608 C = 6049.897215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.072 3.928 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.258 3.742 10 O -0.582 6.582 11 C -0.118 4.118 12 C 0.041 3.959 13 N -0.461 5.461 14 C 0.181 3.819 15 C -0.175 4.175 16 C -0.162 4.162 17 S 0.213 5.787 18 C -0.174 4.174 19 N 0.063 4.937 20 O -0.088 6.088 21 O -0.202 6.202 22 C 0.053 3.947 23 H 0.269 0.731 24 H 0.381 0.619 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.166 0.834 30 H 0.186 0.814 31 H 0.055 0.945 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.714 -9.394 -7.403 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.131 4.131 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.078 0.922 9 C 0.217 3.783 10 O -0.391 6.391 11 C -0.157 4.157 12 C -0.084 4.084 13 N -0.183 5.183 14 C 0.069 3.931 15 C -0.207 4.207 16 C -0.300 4.300 17 S 0.475 5.525 18 C -0.376 4.376 19 N 0.585 4.415 20 O -0.320 6.320 21 O -0.403 6.403 22 C -0.072 4.072 23 H 0.079 0.921 24 H 0.232 0.768 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.183 0.817 30 H 0.203 0.797 31 H 0.073 0.927 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.514 -11.462 -7.588 16.170 hybrid contribution 0.145 3.209 -0.226 3.221 sum 8.660 -8.253 -7.814 14.288 Atomic orbital electron populations 1.69699 1.05891 1.27680 1.49651 1.24996 0.94995 0.99425 0.93701 0.86473 0.79915 0.82741 0.78157 1.20558 1.20922 1.19795 1.21645 0.93446 0.90606 1.52366 0.92151 1.19146 0.86501 0.89925 0.82680 1.86158 1.53026 1.54157 1.45733 1.22899 1.00061 0.93854 0.98887 1.23290 0.97770 0.94880 0.92481 1.63813 1.23194 1.15636 1.15706 1.18559 0.92178 0.91787 0.90578 1.20759 0.95394 1.02703 1.01869 1.26067 1.04249 0.95484 1.04177 1.84446 1.10789 1.05750 1.51473 1.25783 0.98454 0.96002 1.17346 1.42317 1.00416 1.00286 0.98494 1.94688 1.23793 1.66768 1.46701 1.94515 1.86190 0.95728 1.63893 1.23326 0.96291 0.91445 0.96165 0.92102 0.76837 0.91845 0.90409 0.90944 0.93970 0.81699 0.79730 0.92656 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.81 10.80 55.43 0.60 -22.21 16 2 C 0.07 1.81 5.01 -17.82 -0.09 1.72 16 3 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.54 -13.69 8.08 -34.44 -0.28 -13.96 16 8 H 0.06 1.50 7.58 -52.49 -0.40 1.10 16 9 C 0.26 6.16 1.06 -90.39 -0.10 6.06 16 10 O -0.58 -15.15 12.95 -35.23 -0.46 -15.61 16 11 C -0.12 -2.61 5.55 -25.35 -0.14 -2.75 16 12 C 0.04 0.77 6.40 -2.19 -0.01 0.76 16 13 N -0.46 -8.93 4.11 -167.93 -0.69 -9.61 16 14 C 0.18 2.96 4.79 -85.12 -0.41 2.55 16 15 C -0.17 -2.22 8.38 -41.07 -0.34 -2.56 16 16 C -0.16 -1.54 11.22 29.05 0.33 -1.22 16 17 S 0.21 2.38 23.14 -107.50 -2.49 -0.11 16 18 C -0.17 -2.82 7.51 -11.18 -0.08 -2.90 16 19 N 0.06 1.18 4.46 33.50 0.15 1.33 16 20 O -0.09 -1.82 17.88 -29.46 -0.53 -2.35 16 21 O -0.20 -3.68 19.09 -29.46 -0.56 -4.24 16 22 C 0.05 1.12 5.65 -2.18 -0.01 1.10 16 23 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 24 H 0.38 9.97 7.31 45.56 0.33 10.30 16 25 H 0.06 1.47 7.98 -51.93 -0.41 1.05 16 26 H 0.08 1.81 7.22 -51.93 -0.38 1.43 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.04 0.71 7.33 -51.93 -0.38 0.33 16 29 H 0.17 1.98 7.25 -52.49 -0.38 1.60 16 30 H 0.19 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.06 1.06 6.11 -51.93 -0.32 0.74 16 32 H 0.08 1.73 8.08 -51.93 -0.42 1.31 16 LS Contribution 290.29 15.07 4.37 4.37 Total: -1.00 -28.32 290.29 -8.09 -36.41 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -2.33 Total: 8.57 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.14 Total: -11.21 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: 0.06 Total: -30.50 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -1.55 Total: -22.20 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.49 Total: -0.11 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.32 -8.09 -36.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974777.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.780 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds