Wall clock time and date at job start Tue Mar 31 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99701 * 2 1 4 4 H 1.48502 * 109.47246 * 266.33645 * 3 2 1 5 5 H 1.48500 * 109.47278 * 26.33346 * 3 2 1 6 6 H 1.48498 * 109.47014 * 146.33358 * 3 2 1 7 7 C 1.37873 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 353.60617 * 7 2 1 9 9 C 1.50701 * 119.99697 * 173.61000 * 7 2 1 10 10 O 1.42896 * 110.63005 * 324.12099 * 9 7 2 11 11 C 1.55139 * 110.85584 * 200.90807 * 9 7 2 12 12 C 1.54904 * 101.65647 * 205.89709 * 11 9 7 13 13 N 1.47846 * 104.79664 * 37.06872 * 12 11 9 14 14 C 1.39614 * 111.00086 * 213.64404 * 13 12 11 15 15 C 1.34102 * 125.23209 * 300.83653 * 14 13 12 16 16 C 1.38588 * 114.71860 * 179.72932 * 15 14 13 17 17 C 1.33230 * 114.98051 * 0.27301 * 16 15 14 18 18 N 1.48183 * 125.12221 * 179.97438 * 17 16 15 19 19 O 1.21794 * 120.00283 * 0.02562 * 18 17 16 20 20 O 1.21803 * 119.99602 * 180.02562 * 18 17 16 21 21 S 1.75856 * 109.74777 * 359.97438 * 17 16 15 22 22 C 1.47440 * 108.56562 * 335.90533 * 13 12 11 23 23 H 0.97004 * 120.00588 * 0.02562 * 1 2 3 24 24 H 0.96704 * 113.99999 * 297.75686 * 10 9 7 25 25 H 1.09006 * 110.99087 * 323.98967 * 11 9 7 26 26 H 1.08997 * 110.99462 * 87.76258 * 11 9 7 27 27 H 1.09000 * 110.37473 * 278.24052 * 12 11 9 28 28 H 1.09000 * 110.37768 * 155.89806 * 12 11 9 29 29 H 1.08003 * 122.64503 * 0.02562 * 15 14 13 30 30 H 1.07994 * 122.50770 * 180.25599 * 16 15 14 31 31 H 1.09006 * 109.88902 * 120.39659 * 22 13 12 32 32 H 1.09002 * 109.89106 * 241.58025 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5740 2.0018 -1.3972 5 1 1.4099 2.6738 0.6211 6 1 3.5057 1.4639 0.7761 7 6 2.0045 -1.1940 -0.0005 8 1 1.4696 -2.1265 0.1032 9 6 3.5045 -1.1979 -0.1458 10 8 3.9271 -0.1606 -1.0331 11 6 4.0081 -2.5801 -0.6384 12 6 5.4549 -2.6014 -0.0853 13 7 5.3655 -1.9352 1.2315 14 6 6.5301 -1.2169 1.5089 15 6 7.7630 -1.7396 1.5798 16 6 8.7648 -0.8250 1.8638 17 6 8.3503 0.4305 2.0284 18 7 9.2272 1.5840 2.3386 19 8 10.4278 1.4206 2.4615 20 8 8.7471 2.6957 2.4705 21 16 6.6058 0.5121 1.8222 22 6 4.1864 -1.0499 1.2307 23 1 -0.4851 0.8400 -0.0004 24 1 3.5919 -0.2539 -1.9353 25 1 3.4143 -3.3875 -0.2099 26 1 4.0049 -2.6315 -1.7272 27 1 6.1220 -2.0479 -0.7461 28 1 5.8014 -3.6282 0.0317 29 1 7.9605 -2.7898 1.4229 30 1 9.8035 -1.1088 1.9459 31 1 3.4971 -1.3497 2.0201 32 1 4.4985 -0.0164 1.3807 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591976450.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:52 Heat of formation + Delta-G solvation = -3.630010 kcal Electronic energy + Delta-G solvation = -20328.718231 eV Core-core repulsion = 16998.835722 eV Total energy + Delta-G solvation = -3329.882510 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.92235 -39.90800 -37.82635 -36.42860 -35.46611 -32.57924 -31.44837 -29.35301 -28.86076 -26.01554 -24.47296 -23.57072 -21.66381 -20.63287 -19.95220 -19.36523 -18.32726 -17.55311 -17.48664 -16.59243 -16.03908 -15.32056 -15.31142 -14.66653 -14.37806 -13.59209 -13.39057 -13.11028 -12.93905 -12.80177 -12.07856 -12.05822 -11.62851 -11.52945 -11.36330 -11.20829 -11.12565 -11.11678 -10.81333 -10.54379 -10.45267 -9.89725 -9.44403 -8.90902 -8.85322 -8.77239 -8.16965 -6.38791 -4.53007 -0.21319 0.59345 1.22325 1.42959 1.74444 2.30189 3.27476 3.37879 3.47122 3.62734 4.27839 4.61844 4.77672 4.84659 4.91802 4.97543 5.29990 5.37398 5.47915 5.50951 5.62542 5.67098 5.85689 6.02378 6.18933 6.33440 6.40326 6.56034 6.69799 6.82683 7.21766 7.69569 7.92297 8.40095 8.62468 9.21208 10.69846 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.023507 B = 0.005988 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.858275 B = 4675.218870 C = 5565.474982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.079 3.921 3 Si 0.936 3.064 4 H -0.286 1.286 5 H -0.317 1.317 6 H -0.272 1.272 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.213 3.787 10 O -0.569 6.569 11 C -0.143 4.143 12 C 0.047 3.953 13 N -0.442 5.442 14 C 0.084 3.916 15 C -0.210 4.210 16 C -0.003 4.003 17 C -0.225 4.225 18 N 0.072 4.928 19 O -0.167 6.167 20 O -0.172 6.172 21 S 0.229 5.771 22 C 0.038 3.962 23 H 0.269 0.731 24 H 0.377 0.623 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.114 0.886 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.777 -4.472 0.428 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.128 4.128 3 Si 0.770 3.230 4 H -0.213 1.213 5 H -0.248 1.248 6 H -0.198 1.198 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.173 3.827 10 O -0.377 6.377 11 C -0.181 4.181 12 C -0.079 4.079 13 N -0.157 5.157 14 C -0.138 4.138 15 C -0.241 4.241 16 C -0.039 4.039 17 C -0.426 4.426 18 N 0.588 4.412 19 O -0.380 6.380 20 O -0.384 6.384 21 S 0.491 5.509 22 C -0.088 4.088 23 H 0.079 0.921 24 H 0.226 0.774 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.179 0.821 30 H 0.179 0.821 31 H 0.132 0.868 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.315 -3.925 1.269 12.044 hybrid contribution 1.420 0.293 -0.832 1.672 sum 12.736 -3.632 0.437 13.250 Atomic orbital electron populations 1.69942 1.06759 1.28063 1.46647 1.25121 0.94876 1.00321 0.92472 0.85963 0.77948 0.80672 0.78432 1.21290 1.24760 1.19776 1.21155 0.88137 0.95526 1.54632 0.89815 1.20211 0.94373 0.83038 0.85101 1.86130 1.76481 1.50821 1.24290 1.23348 0.93075 1.00849 1.00862 1.23289 0.99829 0.98922 0.85816 1.60620 0.99930 1.25434 1.29741 1.24725 0.95316 0.94219 0.99518 1.19821 0.89509 1.01864 1.12873 1.20073 1.02449 0.89259 0.92160 1.25872 0.97543 0.91186 1.28030 1.42535 1.00597 1.01071 0.97038 1.94505 0.97128 1.91373 1.55036 1.94569 1.78809 1.09711 1.55296 1.85475 0.94024 1.02922 1.68520 1.24041 0.89560 0.93277 1.01938 0.92106 0.77408 0.89618 0.90331 0.91983 0.89588 0.82145 0.82102 0.86765 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.63 13.96 55.43 0.77 -23.85 16 2 C 0.08 2.03 5.46 -17.82 -0.10 1.94 16 3 Si 0.94 21.85 24.89 -169.99 -4.23 17.62 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.32 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.27 -6.15 5.19 56.52 0.29 -5.86 16 7 C -0.56 -13.48 8.71 -34.44 -0.30 -13.78 16 8 H 0.08 2.21 7.99 -52.48 -0.42 1.80 16 9 C 0.21 4.16 0.68 -89.95 -0.06 4.10 16 10 O -0.57 -10.97 8.87 -35.23 -0.31 -11.29 16 11 C -0.14 -2.23 6.23 -24.60 -0.15 -2.39 16 12 C 0.05 0.63 6.36 -2.30 -0.01 0.62 16 13 N -0.44 -6.88 5.27 -169.07 -0.89 -7.77 16 14 C 0.08 1.24 5.78 -15.46 -0.09 1.15 16 15 C -0.21 -2.54 9.79 -40.91 -0.40 -2.94 16 16 C 0.00 -0.04 9.80 -41.20 -0.40 -0.44 16 17 C -0.22 -3.41 7.50 -11.29 -0.08 -3.50 16 18 N 0.07 1.20 4.46 33.44 0.15 1.35 16 19 O -0.17 -2.70 18.93 -29.46 -0.56 -3.26 16 20 O -0.17 -3.06 19.08 -29.46 -0.56 -3.62 16 21 S 0.23 3.69 20.50 -107.50 -2.20 1.49 16 22 C 0.04 0.71 5.56 -2.84 -0.02 0.70 16 23 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.38 6.31 9.06 45.56 0.41 6.73 16 25 H 0.09 1.37 7.99 -51.93 -0.42 0.95 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.83 7.79 -51.93 -0.40 0.42 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.16 1.53 8.06 -52.48 -0.42 1.11 16 30 H 0.16 1.58 8.00 -52.49 -0.42 1.16 16 31 H 0.11 2.20 7.82 -51.93 -0.41 1.80 16 32 H 0.07 1.28 3.42 -37.84 -0.13 1.15 16 LS Contribution 285.96 15.07 4.31 4.31 Total: -1.00 -28.33 285.96 -7.44 -35.77 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -2.29 Total: 3.81 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -1.62 Total: -14.55 kcal Atomic # 7 Polarization: -30.31 SS G_CDS: 0.03 Total: -30.28 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -1.43 Total: -18.17 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.23 Total: 17.62 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -2.20 Total: 1.49 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.33 -7.44 -35.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976450.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.143 kcal (2) G-P(sol) polarization free energy of solvation -28.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds