Wall clock time and date at job start Tue Mar 31 2020 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00020 * 2 1 4 4 H 1.48504 * 109.46812 * 274.99868 * 3 2 1 5 5 H 1.48499 * 109.47283 * 34.99690 * 3 2 1 6 6 H 1.48498 * 109.47085 * 154.99966 * 3 2 1 7 7 C 1.37875 * 119.99578 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99615 * 184.96223 * 7 2 1 9 9 C 1.50697 * 120.00192 * 4.95968 * 7 2 1 10 10 O 1.42900 * 110.27580 * 296.92774 * 9 7 2 11 11 C 1.54598 * 110.30905 * 59.12602 * 9 7 2 12 12 C 1.54937 * 102.91844 * 140.87071 * 11 9 7 13 13 N 1.48526 * 103.22962 * 322.58505 * 12 11 9 14 14 C 1.39620 * 110.99842 * 159.72292 * 13 12 11 15 15 C 1.34094 * 125.23672 * 62.60338 * 14 13 12 16 16 C 1.38586 * 114.71769 * 179.75913 * 15 14 13 17 17 C 1.33223 * 114.98410 * 0.49148 * 16 15 14 18 18 N 1.48185 * 125.13143 * 179.79189 * 17 16 15 19 19 O 1.21805 * 119.99805 * 359.72958 * 18 17 16 20 20 O 1.21801 * 120.00142 * 179.72576 * 18 17 16 21 21 S 1.75860 * 109.74376 * 359.53659 * 17 16 15 22 22 C 1.47895 * 105.82095 * 39.21136 * 13 12 11 23 23 H 0.97002 * 120.00167 * 0.02562 * 1 2 3 24 24 H 0.96704 * 113.99670 * 57.91088 * 10 9 7 25 25 H 1.08993 * 110.72049 * 259.23028 * 11 9 7 26 26 H 1.08998 * 110.72107 * 22.33175 * 11 9 7 27 27 H 1.09003 * 110.66314 * 204.14509 * 12 11 9 28 28 H 1.09009 * 110.66729 * 81.02526 * 12 11 9 29 29 H 1.07999 * 122.64715 * 359.97438 * 15 14 13 30 30 H 1.08003 * 122.50868 * 180.31804 * 16 15 14 31 31 H 1.08995 * 109.91959 * 94.02025 * 22 13 12 32 32 H 1.09003 * 109.91684 * 215.31890 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5034 2.6199 0.8030 6 1 3.5955 1.4120 0.5917 7 6 2.0044 -1.1941 -0.0005 8 1 3.0814 -1.1959 0.0804 9 6 1.2551 -2.4966 -0.1139 10 8 0.3947 -2.6727 1.0133 11 6 0.4384 -2.5334 -1.4261 12 6 0.6070 -3.9994 -1.8981 13 7 2.0124 -4.3140 -1.5348 14 6 2.2131 -5.6937 -1.4607 15 6 2.0815 -6.5507 -2.4835 16 6 2.3386 -7.8751 -2.1666 17 6 2.6667 -8.0958 -0.8944 18 7 2.9815 -9.4218 -0.3126 19 8 2.9461 -10.4179 -1.0127 20 8 3.2757 -9.5156 0.8656 21 16 2.6771 -6.5751 -0.0112 22 6 2.2424 -3.6736 -0.2217 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2492 -1.9610 1.1316 25 1 -0.6106 -2.3082 -1.2338 26 1 0.8525 -1.8396 -2.1576 27 1 0.4618 -4.0756 -2.9757 28 1 -0.0835 -4.6559 -1.3685 29 1 1.8007 -6.2335 -3.4769 30 1 2.2749 -8.6693 -2.8957 31 1 2.0553 -4.3896 0.5785 32 1 3.2667 -3.3055 -0.1624 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591976451.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:54 Heat of formation + Delta-G solvation = -10.095580 kcal Electronic energy + Delta-G solvation = -19943.824732 eV Core-core repulsion = 16613.661854 eV Total energy + Delta-G solvation = -3330.162878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.93447 -39.65087 -37.67258 -36.43488 -35.11653 -32.37515 -31.11953 -29.14308 -28.54192 -25.92967 -24.52182 -23.49262 -21.48306 -20.62205 -19.73231 -19.30632 -18.20634 -17.50509 -17.41109 -16.52538 -15.94473 -15.15418 -14.82387 -14.56434 -14.16543 -13.78099 -13.10267 -12.93540 -12.78803 -12.29907 -11.88954 -11.60177 -11.54779 -11.47794 -11.32717 -11.13110 -11.12272 -10.99137 -10.84531 -10.62806 -10.31430 -9.92627 -9.53156 -8.89945 -8.81224 -8.45702 -8.19508 -6.44315 -4.52017 -0.22517 0.57600 1.21464 1.40419 1.73143 2.31037 3.10224 3.19170 3.22325 3.69397 4.14552 4.75284 4.81552 4.91178 5.07148 5.31744 5.42071 5.50015 5.58873 5.70556 5.82963 5.83488 5.98004 6.31885 6.35295 6.52273 6.66132 6.88739 7.15360 7.17110 7.57048 7.68054 7.81862 8.50101 9.11725 9.23815 10.63593 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.039023 B = 0.004075 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.344200 B = 6870.349261 C = 7081.730368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.249 3.751 10 O -0.592 6.592 11 C -0.120 4.120 12 C 0.036 3.964 13 N -0.426 5.426 14 C 0.082 3.918 15 C -0.207 4.207 16 C -0.001 4.001 17 C -0.222 4.222 18 N 0.072 4.928 19 O -0.167 6.167 20 O -0.171 6.171 21 S 0.218 5.782 22 C 0.041 3.959 23 H 0.270 0.730 24 H 0.388 0.612 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.162 0.838 30 H 0.162 0.838 31 H 0.055 0.945 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.086 -8.646 -4.766 9.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.209 3.791 10 O -0.402 6.402 11 C -0.159 4.159 12 C -0.089 4.089 13 N -0.141 5.141 14 C -0.140 4.140 15 C -0.238 4.238 16 C -0.037 4.037 17 C -0.424 4.424 18 N 0.588 4.412 19 O -0.381 6.381 20 O -0.384 6.384 21 S 0.479 5.521 22 C -0.086 4.086 23 H 0.080 0.920 24 H 0.240 0.760 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.180 0.820 30 H 0.180 0.820 31 H 0.073 0.927 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.794 -7.800 -3.824 8.871 hybrid contribution -0.470 0.400 -1.031 1.202 sum 1.323 -7.400 -4.855 8.949 Atomic orbital electron populations 1.69652 1.06022 1.27930 1.49791 1.24999 0.95026 0.99677 0.93338 0.86385 0.79969 0.82361 0.78227 1.20399 1.20955 1.19614 1.21601 0.93950 0.90196 1.51925 0.91644 1.19257 0.86004 0.90559 0.83297 1.86092 1.51976 1.52088 1.50071 1.23117 1.02030 0.90891 0.99891 1.23651 0.83953 1.00159 1.01141 1.61666 1.23937 1.00593 1.27897 1.24836 0.99307 0.93808 0.96036 1.19844 1.12588 0.90214 1.01154 1.20094 0.91682 0.98313 0.93633 1.25704 1.27580 0.88786 1.00306 1.42534 0.97134 1.01125 1.00437 1.94516 1.57106 1.26037 1.60395 1.94561 1.51648 1.92675 0.99499 1.85149 1.68208 0.91147 1.07553 1.23368 1.03062 0.97141 0.85024 0.92004 0.76006 0.90175 0.90422 0.89803 0.92531 0.82038 0.82013 0.92690 0.88185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.78 10.89 55.43 0.60 -21.17 16 2 C 0.07 1.76 5.22 -17.82 -0.09 1.67 16 3 Si 0.90 19.24 29.54 -169.99 -5.02 14.22 16 4 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 7 C -0.54 -13.10 8.12 -34.44 -0.28 -13.38 16 8 H 0.07 1.60 7.36 -52.48 -0.39 1.21 16 9 C 0.25 5.47 0.99 -90.41 -0.09 5.38 16 10 O -0.59 -13.80 12.94 -35.23 -0.46 -14.26 16 11 C -0.12 -2.39 5.32 -24.87 -0.13 -2.52 16 12 C 0.04 0.58 6.26 -1.90 -0.01 0.57 16 13 N -0.43 -7.09 5.38 -168.32 -0.91 -7.99 16 14 C 0.08 1.21 5.84 -15.46 -0.09 1.12 16 15 C -0.21 -2.55 9.89 -40.91 -0.40 -2.96 16 16 C 0.00 -0.01 9.80 -41.20 -0.40 -0.42 16 17 C -0.22 -3.22 7.50 -11.29 -0.08 -3.30 16 18 N 0.07 1.15 4.46 33.44 0.15 1.30 16 19 O -0.17 -2.63 18.93 -29.46 -0.56 -3.19 16 20 O -0.17 -2.90 19.08 -29.46 -0.56 -3.46 16 21 S 0.22 3.21 20.69 -107.50 -2.22 0.99 16 22 C 0.04 0.78 5.79 -2.76 -0.02 0.76 16 23 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 24 H 0.39 9.21 7.29 45.56 0.33 9.55 16 25 H 0.08 1.65 7.99 -51.93 -0.41 1.24 16 26 H 0.08 1.64 7.85 -51.93 -0.41 1.23 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.90 8.00 -51.92 -0.42 0.48 16 29 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.16 1.56 8.00 -52.48 -0.42 1.14 16 31 H 0.06 1.03 5.81 -49.82 -0.29 0.74 16 32 H 0.10 1.91 7.39 -51.93 -0.38 1.52 16 LS Contribution 292.16 15.07 4.40 4.40 Total: -1.00 -25.25 292.16 -8.54 -33.79 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -2.37 Total: 8.46 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -1.61 Total: -13.09 kcal Atomic # 7 Polarization: -27.71 SS G_CDS: -0.15 Total: -27.86 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -1.58 Total: -20.91 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -2.22 Total: 0.99 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -25.25 -8.54 -33.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976451.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.696 kcal (2) G-P(sol) polarization free energy of solvation -25.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds