Wall clock time and date at job start Tue Mar 31 2020 05:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47186 * 2 1 4 4 H 1.09004 * 109.47218 * 305.73376 * 3 2 1 5 5 C 1.50705 * 109.47076 * 185.74433 * 3 2 1 6 6 H 1.08000 * 119.99524 * 335.21131 * 5 3 2 7 7 C 1.37878 * 120.00216 * 155.21723 * 5 3 2 8 8 N 1.31513 * 120.00005 * 355.33402 * 7 5 3 9 9 Si 1.86803 * 120.00120 * 175.33828 * 7 5 3 10 10 H 1.48498 * 109.47159 * 89.99687 * 9 7 5 11 11 H 1.48497 * 109.46840 * 209.99846 * 9 7 5 12 12 H 1.48506 * 109.46817 * 329.99720 * 9 7 5 13 13 N 1.46497 * 109.47611 * 65.73896 * 3 2 1 14 14 C 1.39049 * 120.00143 * 275.00512 * 13 3 2 15 15 N 1.32401 * 119.70771 * 359.71973 * 14 13 3 16 16 C 1.31956 * 121.63216 * 179.71487 * 15 14 13 17 17 C 1.38059 * 120.87003 * 0.56356 * 16 15 14 18 18 C 1.38844 * 119.33309 * 359.72761 * 17 16 15 19 19 C 1.38402 * 118.50139 * 0.02562 * 18 17 16 20 20 Br 1.89087 * 120.46066 * 180.02562 * 19 18 17 21 21 H 1.08996 * 109.47413 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47190 * 300.00016 * 1 2 3 23 23 H 1.08994 * 109.47219 * 59.99868 * 1 2 3 24 24 H 1.09003 * 109.47176 * 239.99427 * 2 1 3 25 25 H 1.08999 * 109.47095 * 119.99661 * 2 1 3 26 26 H 0.97004 * 119.99640 * 5.27667 * 8 7 5 27 27 H 0.97002 * 120.00052 * 94.99863 * 13 3 2 28 28 H 1.08001 * 119.56571 * 180.27228 * 16 15 14 29 29 H 1.08004 * 120.32934 * 179.70120 * 17 16 15 30 30 H 1.08002 * 120.74710 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5952 1.9851 -0.8342 5 6 3.5403 1.4448 -0.1422 6 1 4.1134 0.5839 0.1687 7 6 4.1811 2.5460 -0.6691 8 7 3.4785 3.5567 -1.1322 9 14 6.0475 2.6025 -0.7254 10 1 6.5218 2.0228 -2.0076 11 1 6.5034 4.0118 -0.6206 12 1 6.6007 1.8177 0.4075 13 7 1.6677 2.0921 1.2592 14 6 0.4134 2.6765 1.3958 15 7 -0.4380 2.6472 0.3823 16 6 -1.6397 3.1848 0.4722 17 6 -2.0504 3.8116 1.6317 18 6 -1.1858 3.8695 2.7165 19 6 0.0663 3.2925 2.5946 20 35 1.2876 3.3385 4.0374 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.5134 3.5618 -1.0339 27 1 2.2963 2.1146 1.9977 28 1 -2.3092 3.1379 -0.3740 29 1 -3.0342 4.2529 1.6940 30 1 -1.4836 4.3538 3.6347 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598614309.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:07 Heat of formation + Delta-G solvation = 31.167188 kcal Electronic energy + Delta-G solvation = -15191.050587 eV Core-core repulsion = 12646.205605 eV Total energy + Delta-G solvation = -2544.844982 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.75401 -36.25018 -32.88172 -32.58594 -31.68749 -29.98001 -28.39662 -26.21786 -23.33205 -22.69170 -22.00094 -19.95229 -17.59014 -16.88538 -15.74796 -15.32700 -14.57911 -14.00441 -13.82659 -13.78978 -13.05401 -12.83343 -12.65724 -12.27894 -11.65111 -11.08815 -10.90968 -10.82727 -10.74545 -10.48180 -10.20566 -10.13921 -9.93755 -9.37343 -8.95513 -8.91405 -8.70659 -8.44912 -6.86098 -6.55079 -4.36483 1.52159 1.93436 2.08361 3.34236 3.37948 3.54160 4.09336 4.32770 4.39436 5.04211 5.13077 5.33427 5.46391 5.74272 5.87399 6.01116 6.04591 6.22284 6.27170 6.46522 6.67842 6.83687 6.85925 6.96417 7.09857 7.32287 7.75434 8.10687 8.27507 8.37322 8.67149 8.96277 9.44196 10.81917 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.017390 B = 0.008249 C = 0.006631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.759374 B = 3393.603080 C = 4221.837092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.117 4.117 3 C 0.244 3.756 4 H 0.061 0.939 5 C -0.610 4.610 6 H 0.056 0.944 7 C 0.033 3.967 8 N -0.887 5.887 9 Si 1.069 2.931 10 H -0.285 1.285 11 H -0.283 1.283 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.437 3.563 15 N -0.524 5.524 16 C 0.165 3.835 17 C -0.267 4.267 18 C -0.003 4.003 19 C -0.237 4.237 20 Br -0.061 7.061 21 H 0.026 0.974 22 H 0.045 0.955 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.042 0.958 26 H 0.278 0.722 27 H 0.398 0.602 28 H 0.151 0.849 29 H 0.127 0.873 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.228 -0.058 8.375 11.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C 0.144 3.856 4 H 0.079 0.921 5 C -0.648 4.648 6 H 0.074 0.926 7 C -0.176 4.176 8 N -0.520 5.520 9 Si 0.897 3.103 10 H -0.211 1.211 11 H -0.209 1.209 12 H -0.212 1.212 13 N -0.304 5.304 14 C 0.194 3.806 15 N -0.243 5.243 16 C 0.003 3.997 17 C -0.292 4.292 18 C -0.030 4.030 19 C -0.325 4.325 20 Br 0.023 6.977 21 H 0.045 0.955 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.236 0.764 28 H 0.168 0.832 29 H 0.145 0.855 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.061 0.311 7.405 9.574 hybrid contribution -1.678 -0.412 1.388 2.216 sum -7.739 -0.101 8.793 11.714 Atomic orbital electron populations 1.21840 0.97165 0.98396 1.02029 1.21818 0.94237 0.99216 1.00354 1.19008 0.94986 0.88639 0.82965 0.92128 1.22163 0.91200 1.04184 1.47281 0.92583 1.25992 1.07182 0.92449 0.92004 1.70718 1.09784 1.32281 1.39232 0.83547 0.73894 0.76252 0.76616 1.21118 1.20864 1.21181 1.47295 1.09513 1.54820 1.18788 1.18585 0.88119 0.87057 0.86820 1.67684 1.04011 1.23866 1.28765 1.22528 0.91506 0.89443 0.96228 1.21550 1.01808 1.10374 0.95455 1.21097 0.90684 0.92905 0.98348 1.22036 0.97982 1.17303 0.95194 1.96543 1.60080 1.98356 1.42757 0.95485 0.93572 0.92439 0.92313 0.93915 0.91026 0.76384 0.83182 0.85529 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.46 37.16 0.31 -2.32 16 2 C -0.12 -2.52 5.58 -26.74 -0.15 -2.67 16 3 C 0.24 5.93 1.96 -69.08 -0.14 5.79 16 4 H 0.06 1.64 6.07 -51.93 -0.32 1.32 16 5 C -0.61 -16.19 8.50 -34.44 -0.29 -16.49 16 6 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 7 C 0.03 0.90 5.45 -17.82 -0.10 0.81 16 8 N -0.89 -25.91 13.62 55.43 0.76 -25.16 16 9 Si 1.07 24.20 29.91 -169.99 -5.08 19.11 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.68 -15.26 5.11 -55.03 -0.28 -15.54 16 14 C 0.44 9.03 6.06 -154.96 -0.94 8.09 16 15 N -0.52 -10.40 6.44 -12.41 -0.08 -10.48 16 16 C 0.17 2.64 11.17 -17.56 -0.20 2.44 16 17 C -0.27 -3.80 10.10 -39.42 -0.40 -4.20 16 18 C 0.00 -0.04 9.93 -39.30 -0.39 -0.43 16 19 C -0.24 -4.32 6.26 -39.17 -0.25 -4.57 16 20 Br -0.06 -1.01 32.15 -68.01 -2.19 -3.20 16 21 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.92 5.58 -51.93 -0.29 0.63 16 23 H 0.06 1.12 7.72 -51.93 -0.40 0.72 16 24 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.28 8.27 6.66 -40.82 -0.27 8.00 16 27 H 0.40 8.91 6.98 -40.82 -0.28 8.63 16 28 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 271.46 15.07 4.09 4.09 Total: -1.00 -28.39 271.46 -8.62 -37.01 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -3.31 Total: 7.72 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -2.53 Total: -13.55 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.39 Total: -51.18 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.08 Total: 19.11 kcal Atomic # 35 Polarization: -1.01 SS G_CDS: -2.19 Total: -3.20 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.39 -8.62 -37.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598614309.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.174 kcal (2) G-P(sol) polarization free energy of solvation -28.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds