Wall clock time and date at job start Tue Mar 31 2020 05:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76194 * 103.00206 * 2 1 4 4 C 1.39175 * 119.63915 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.16624 * 179.97438 * 4 3 2 6 6 C 1.39435 * 118.45404 * 0.02562 * 5 4 3 7 7 N 1.40186 * 120.39649 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00359 * 34.94828 * 7 6 5 9 9 O 1.21297 * 120.00042 * 355.33656 * 8 7 6 10 10 C 1.50702 * 120.00039 * 175.04995 * 8 7 6 11 11 S 1.80997 * 109.46932 * 180.27846 * 10 8 7 12 12 C 1.76202 * 99.99750 * 180.02562 * 11 10 8 13 13 H 1.07997 * 120.00425 * 0.02562 * 12 11 10 14 14 C 1.38800 * 120.00157 * 180.02562 * 12 11 10 15 15 N 1.31636 * 119.99742 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00338 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47399 * 89.99876 * 16 14 12 18 18 H 1.48495 * 109.47085 * 209.99689 * 16 14 12 19 19 H 1.48496 * 109.46988 * 329.99988 * 16 14 12 20 20 C 1.38627 * 119.20455 * 0.24462 * 6 5 4 21 21 N 1.31959 * 120.75974 * 359.48648 * 20 6 5 22 22 H 1.08998 * 109.47447 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47435 * 300.00637 * 1 2 3 24 24 H 1.09004 * 109.46978 * 59.99940 * 1 2 3 25 25 H 1.08005 * 120.41657 * 359.97438 * 4 3 2 26 26 H 1.08004 * 120.76796 * 180.02562 * 5 4 3 27 27 H 0.97005 * 120.00034 * 214.95683 * 7 6 5 28 28 H 1.08996 * 109.47150 * 300.28209 * 10 8 7 29 29 H 1.09008 * 109.46744 * 60.28259 * 10 8 7 30 30 H 0.97001 * 119.99976 * 179.97438 * 15 14 12 31 31 H 1.07997 * 119.61387 * 179.73418 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5439 2.1152 -0.0005 5 6 3.8437 3.4646 -0.0011 6 6 2.7911 4.3791 -0.0005 7 7 3.0487 5.7571 -0.0005 8 6 4.1126 6.2439 -0.6695 9 8 4.8946 5.4839 -1.2007 10 6 4.3272 7.7326 -0.7631 11 16 5.8238 8.0672 -1.7244 12 6 5.8319 9.8285 -1.6747 13 1 5.0501 10.3576 -1.1501 14 6 6.8431 10.5360 -2.3099 15 7 7.7963 9.8912 -2.9490 16 14 6.8521 12.4032 -2.2566 17 1 7.6175 12.8609 -1.0692 18 1 7.4897 12.9305 -3.4898 19 1 5.4565 12.9027 -2.1685 20 6 1.4869 3.9092 0.0057 21 7 1.2363 2.6137 0.0009 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 4.3345 1.3794 -0.0005 26 1 4.8695 3.8026 -0.0019 27 1 2.4612 6.3603 0.4812 28 1 3.4696 8.1931 -1.2536 29 1 4.4386 8.1473 0.2389 30 1 8.5027 10.3857 -3.3932 31 1 0.6666 4.6117 0.0106 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608899529.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:16 Heat of formation + Delta-G solvation = -2.091805 kcal Electronic energy + Delta-G solvation = -16543.527722 eV Core-core repulsion = 13656.464785 eV Total energy + Delta-G solvation = -2887.062937 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.039 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.73661 -38.97776 -34.99588 -32.50431 -32.41909 -30.89778 -29.21339 -28.53752 -25.57627 -24.10408 -23.43591 -20.63223 -18.43725 -18.11187 -17.47110 -16.84660 -16.12296 -15.38851 -14.93894 -14.87083 -14.54790 -14.45130 -14.10287 -13.63769 -13.56350 -13.49445 -12.89551 -12.65847 -12.47565 -12.16680 -11.12901 -11.10022 -11.02513 -10.84525 -10.74657 -10.15683 -9.95687 -9.87620 -9.46931 -9.14074 -9.01215 -8.36271 -7.55188 -6.60600 -6.29278 -4.01361 0.78714 1.13003 1.30011 2.06213 2.72250 2.80175 3.17840 3.21467 3.25949 3.49329 3.58092 4.12349 4.35737 4.74636 4.78458 4.87677 4.95374 4.96774 5.06368 5.11032 5.44070 5.50573 5.55055 5.70268 5.72031 5.96227 5.99909 6.14105 6.63940 7.29782 7.52453 7.54155 8.23883 8.27649 9.16238 10.78132 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.064240 B = 0.002780 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.759851 B =10068.666365 C =10371.495801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.087 6.087 3 C 0.094 3.906 4 C -0.126 4.126 5 C -0.064 4.064 6 C 0.106 3.894 7 N -0.675 5.675 8 C 0.533 3.467 9 O -0.496 6.496 10 C -0.154 4.154 11 S -0.056 6.056 12 C -0.537 4.537 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.920 3.080 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.086 3.914 21 N -0.473 5.473 22 H 0.100 0.900 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.142 0.858 26 H 0.159 0.841 27 H 0.413 0.587 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.269 0.731 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.217 -14.425 8.325 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.151 5.849 3 C -0.155 4.155 4 C -0.152 4.152 5 C -0.093 4.093 6 C 0.006 3.994 7 N -0.323 5.323 8 C 0.320 3.680 9 O -0.368 6.368 10 C -0.304 4.304 11 S 0.170 5.830 12 C -0.686 4.686 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.502 5.502 16 Si 0.746 3.254 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.197 1.197 20 C -0.077 4.077 21 N -0.185 5.185 22 H 0.119 0.881 23 H 0.104 0.896 24 H 0.105 0.895 25 H 0.160 0.840 26 H 0.176 0.824 27 H 0.249 0.751 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.954 -16.931 7.293 22.531 hybrid contribution -1.171 3.878 0.816 4.132 sum -14.125 -13.053 8.108 20.872 Atomic orbital electron populations 1.23413 0.93819 1.05865 1.06625 1.85461 1.07727 0.99432 1.92273 1.22846 0.92177 0.97992 1.02473 1.21603 0.95591 0.96418 1.01593 1.21781 1.00873 0.91481 0.95140 1.18805 0.94494 0.84723 1.01382 1.43660 1.30537 1.05092 1.52990 1.20625 0.79546 0.91216 0.76580 1.90707 1.42926 1.59287 1.43897 1.23546 1.07889 0.92435 1.06538 1.85436 1.23724 1.07465 1.66357 1.22846 1.14430 0.90920 1.40357 0.90789 1.25005 0.94532 0.99623 0.94406 1.70011 1.12061 1.36133 1.31983 0.86142 0.78446 0.82907 0.77866 1.20211 1.20702 1.19660 1.22459 0.94240 0.91897 0.99143 1.67924 1.34537 1.01795 1.14220 0.88102 0.89580 0.89536 0.84000 0.82374 0.75105 0.88630 0.88651 0.92072 0.82268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 10.01 101.05 1.01 0.02 16 2 S -0.09 -0.88 22.55 -107.50 -2.42 -3.31 16 3 C 0.09 1.17 7.00 -16.95 -0.12 1.06 16 4 C -0.13 -1.57 9.83 -39.24 -0.39 -1.96 16 5 C -0.06 -0.88 8.80 -39.14 -0.34 -1.23 16 6 C 0.11 1.38 6.32 -83.45 -0.53 0.85 16 7 N -0.68 -8.45 5.36 -9.72 -0.05 -8.51 16 8 C 0.53 9.13 7.71 -10.98 -0.08 9.04 16 9 O -0.50 -10.30 13.34 5.54 0.07 -10.23 16 10 C -0.15 -2.84 6.16 36.01 0.22 -2.62 16 11 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 12 C -0.54 -14.79 9.50 30.94 0.29 -14.49 16 13 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 14 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 15 N -0.87 -25.57 13.22 55.49 0.73 -24.83 16 16 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 C 0.09 0.99 11.11 -17.35 -0.19 0.79 16 21 N -0.47 -5.91 9.41 -11.98 -0.11 -6.02 16 22 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 24 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 25 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 26 H 0.16 2.41 6.31 -52.48 -0.33 2.08 16 27 H 0.41 3.61 8.83 -40.82 -0.36 3.25 16 28 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 29 H 0.10 1.59 8.14 -51.91 -0.42 1.17 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -33.16 305.34 -7.83 -40.99 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -3.20 Total: 1.69 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.22 Total: -6.59 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.57 Total: -39.36 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -2.34 SS G_CDS: -4.64 Total: -6.98 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.16 -7.83 -40.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608899529.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.897 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds