Wall clock time and date at job start Tue Mar 31 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38055 * 119.56451 * 2 1 4 4 C 1.38841 * 119.33767 * 179.73432 * 3 2 1 5 5 C 1.38410 * 118.49513 * 0.53003 * 4 3 2 6 6 Br 1.89093 * 120.46160 * 179.71059 * 5 4 3 7 7 C 1.39179 * 119.07905 * 359.73576 * 5 4 3 8 8 N 1.39051 * 119.70677 * 179.97438 * 7 5 4 9 9 C 1.46901 * 111.00348 * 115.44923 * 8 7 5 10 10 C 1.46903 * 110.99414 * 239.39796 * 8 7 5 11 11 C 1.50703 * 109.47088 * 169.99911 * 10 8 7 12 12 H 1.08009 * 119.99716 * 0.02562 * 11 10 8 13 13 C 1.37871 * 120.00202 * 180.02562 * 11 10 8 14 14 N 1.31515 * 120.00439 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99944 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47258 * 89.99740 * 15 13 11 17 17 H 1.48508 * 109.47091 * 209.99849 * 15 13 11 18 18 H 1.48494 * 109.47444 * 329.99656 * 15 13 11 19 19 N 1.31951 * 119.56230 * 180.27413 * 2 1 3 20 20 H 1.08994 * 109.46731 * 269.72762 * 1 2 3 21 21 H 1.08995 * 109.47171 * 149.72698 * 1 2 3 22 22 H 1.09000 * 109.47239 * 29.72538 * 1 2 3 23 23 H 1.08003 * 120.32931 * 0.02562 * 3 2 1 24 24 H 1.07994 * 120.75406 * 180.24140 * 4 3 2 25 25 H 1.09001 * 109.47128 * 65.70517 * 9 8 7 26 26 H 1.08996 * 109.46918 * 185.70878 * 9 8 7 27 27 H 1.08996 * 109.46747 * 305.70576 * 9 8 7 28 28 H 1.08991 * 109.47842 * 289.99835 * 10 8 7 29 29 H 1.09005 * 109.47285 * 50.00508 * 10 8 7 30 30 H 0.96999 * 120.00473 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1882 1.2008 0.0000 4 6 3.5766 1.1953 0.0056 5 6 4.2321 -0.0237 -0.0002 6 35 6.1217 -0.0960 -0.0013 7 6 3.4812 -1.1955 -0.0058 8 7 4.1264 -2.4273 -0.0122 9 6 3.8490 -3.1734 1.2225 10 6 3.7516 -3.2115 -1.1965 11 6 4.6439 -4.4216 -1.3007 12 1 5.4122 -4.5912 -0.5608 13 6 4.4794 -5.3119 -2.3404 14 7 3.5435 -5.1057 -3.2411 15 14 5.5850 -6.8122 -2.4691 16 1 4.9708 -7.9445 -1.7304 17 1 5.7502 -7.1843 -3.8973 18 1 6.9129 -6.5004 -1.8821 19 7 2.1580 -1.1477 -0.0055 20 1 -0.3632 -0.0049 1.0276 21 1 -0.3633 -0.8875 -0.5180 22 1 -0.3634 0.8924 -0.5096 23 1 1.6464 2.1351 0.0004 24 1 4.1325 2.1212 0.0096 25 1 2.7903 -3.4295 1.2622 26 1 4.4445 -4.0862 1.2369 27 1 4.1066 -2.5579 2.0844 28 1 2.7138 -3.5322 -1.1066 29 1 3.8662 -2.5977 -2.0900 30 1 3.4275 -5.7323 -3.9724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712558587.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:47 Heat of formation + Delta-G solvation = 25.481569 kcal Electronic energy + Delta-G solvation = -14822.598047 eV Core-core repulsion = 12277.506518 eV Total energy + Delta-G solvation = -2545.091529 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.55132 -38.07844 -34.83724 -34.41139 -32.45962 -31.34969 -29.38956 -28.14027 -26.74877 -24.72945 -23.01902 -22.17961 -18.63064 -17.97337 -17.39368 -16.82892 -16.44984 -15.93541 -15.04923 -14.91453 -14.89933 -14.05431 -14.04294 -13.49438 -13.29638 -13.13522 -12.97775 -12.85831 -12.62730 -12.43492 -12.09161 -11.93473 -11.46386 -11.22793 -10.65461 -10.64249 -10.46373 -9.56238 -9.43639 -8.21968 -6.33037 -0.11791 0.17740 0.73394 1.41114 1.43241 1.55070 2.38614 2.58062 2.88942 3.11507 3.46349 3.77382 3.99165 4.15200 4.31937 4.50614 4.62882 4.69190 4.77013 4.88591 4.93477 4.99920 5.10150 5.14805 5.18540 5.52981 5.65951 5.99367 6.03574 6.58605 6.79991 6.94799 7.36123 8.89922 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.017853 B = 0.007290 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.972791 B = 3839.996525 C = 4970.931801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.128 3.872 3 C -0.166 4.166 4 C -0.040 4.040 5 C -0.146 4.146 6 Br -0.026 7.026 7 C 0.307 3.693 8 N -0.492 5.492 9 C 0.054 3.946 10 C 0.233 3.767 11 C -0.523 4.523 12 H 0.070 0.930 13 C 0.002 3.998 14 N -0.935 5.935 15 Si 0.974 3.026 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.262 1.262 19 N -0.540 5.540 20 H 0.095 0.905 21 H 0.057 0.943 22 H 0.110 0.890 23 H 0.189 0.811 24 H 0.179 0.821 25 H 0.017 0.983 26 H 0.075 0.925 27 H 0.069 0.931 28 H -0.029 1.029 29 H -0.013 1.013 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.850 15.750 8.656 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.011 4.011 3 C -0.186 4.186 4 C -0.067 4.067 5 C -0.229 4.229 6 Br 0.059 6.941 7 C 0.078 3.922 8 N -0.215 5.215 9 C -0.093 4.093 10 C 0.108 3.892 11 C -0.562 4.562 12 H 0.088 0.912 13 C -0.196 4.196 14 N -0.575 5.575 15 Si 0.798 3.202 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.186 1.186 19 N -0.254 5.254 20 H 0.114 0.886 21 H 0.076 0.924 22 H 0.128 0.872 23 H 0.206 0.794 24 H 0.196 0.804 25 H 0.036 0.964 26 H 0.094 0.906 27 H 0.087 0.913 28 H -0.011 1.011 29 H 0.005 0.995 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.170 14.929 8.479 17.170 hybrid contribution -0.392 -0.520 -0.463 0.799 sum -0.562 14.409 8.016 16.498 Atomic orbital electron populations 1.20847 0.86363 1.04265 1.04268 1.22042 0.98845 0.88042 0.92195 1.22363 0.93739 1.00217 1.02244 1.21940 0.95150 0.96549 0.93104 1.22834 0.92676 0.95831 1.11578 1.96609 1.00704 1.99225 1.97564 1.20159 0.86984 0.92431 0.92668 1.60413 1.53783 1.02191 1.05066 1.22099 0.98903 0.98458 0.89790 1.19175 0.93370 0.91233 0.85425 1.21413 1.17209 1.06768 1.10774 0.91220 1.25954 0.97063 1.01626 0.94954 1.70116 1.34366 1.38418 1.14593 0.85316 0.79086 0.78461 0.77361 1.19608 1.20747 1.18645 1.67878 1.09923 1.32367 1.15245 0.88630 0.92418 0.87161 0.79413 0.80411 0.96448 0.90585 0.91259 1.01105 0.99455 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.12 10.17 71.24 0.72 -1.39 16 2 C 0.13 3.78 6.78 42.50 0.29 4.07 16 3 C -0.17 -3.70 9.73 22.37 0.22 -3.48 16 4 C -0.04 -1.01 9.93 22.46 0.22 -0.78 16 5 C -0.15 -5.06 6.27 22.54 0.14 -4.92 16 6 Br -0.03 -0.85 33.12 -20.37 -0.67 -1.52 16 7 C 0.31 12.93 5.27 133.06 0.70 13.63 16 8 N -0.49 -23.25 4.00 -730.98 -2.92 -26.17 16 9 C 0.05 2.31 9.17 127.69 1.17 3.48 16 10 C 0.23 13.33 4.45 85.56 0.38 13.72 16 11 C -0.52 -30.68 8.54 25.60 0.22 -30.46 16 12 H 0.07 3.95 7.10 -2.91 -0.02 3.93 16 13 C 0.00 0.12 5.46 84.65 0.46 0.58 16 14 N -0.93 -58.13 13.29 21.44 0.28 -57.84 16 15 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 19 N -0.54 -21.83 9.71 -181.25 -1.76 -23.59 16 20 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.11 1.51 8.07 -2.39 -0.02 1.49 16 23 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 24 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 25 H 0.02 0.75 8.05 -2.39 -0.02 0.73 16 26 H 0.08 3.26 6.91 -2.39 -0.02 3.24 16 27 H 0.07 2.53 8.11 -2.39 -0.02 2.51 16 28 H -0.03 -1.83 8.06 -2.39 -0.02 -1.85 16 29 H -0.01 -0.81 8.06 -2.38 -0.02 -0.83 16 30 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -72.21 281.79 2.61 -69.60 By element: Atomic # 1 Polarization: -3.29 SS G_CDS: 1.13 Total: -2.16 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 4.53 Total: -5.55 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -4.40 Total: -107.61 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 35 Polarization: -0.85 SS G_CDS: -0.67 Total: -1.52 kcal Total: -72.21 2.61 -69.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712558587.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.078 kcal (2) G-P(sol) polarization free energy of solvation -72.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds