Wall clock time and date at job start Tue Mar 31 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47609 * 2 1 4 4 C 1.46501 * 120.00073 * 263.21855 * 3 2 1 5 5 C 1.50703 * 109.46934 * 269.99748 * 4 3 2 6 6 H 1.07996 * 119.99835 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99651 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99854 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 119.99678 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47584 * 60.00430 * 9 7 5 11 11 H 1.48500 * 109.47275 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47636 * 300.00157 * 9 7 5 13 13 C 1.34781 * 119.99905 * 83.21679 * 3 2 1 14 14 O 1.21594 * 119.99612 * 183.48421 * 13 3 2 15 15 C 1.47510 * 120.00069 * 3.48209 * 13 3 2 16 16 C 1.36871 * 122.55016 * 173.43440 * 15 13 3 17 17 S 1.71040 * 108.89018 * 179.97438 * 16 15 13 18 18 C 1.75986 * 90.57539 * 0.02562 * 17 16 15 19 19 C 1.47368 * 125.22545 * 179.97438 * 18 17 16 20 20 O 1.21507 * 119.99580 * 180.02562 * 19 18 17 21 21 O 1.34781 * 119.99969 * 0.02562 * 19 18 17 22 22 N 1.29939 * 109.54740 * 0.23622 * 18 17 16 23 23 H 1.08996 * 109.47195 * 59.99759 * 1 2 3 24 24 H 1.08996 * 109.47399 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.46774 * 300.00203 * 1 2 3 26 26 H 1.09002 * 109.47034 * 239.99577 * 2 1 3 27 27 H 1.09004 * 109.47160 * 119.99919 * 2 1 3 28 28 H 1.09000 * 109.46988 * 29.99942 * 4 3 2 29 29 H 1.08999 * 109.47204 * 149.99609 * 4 3 2 30 30 H 0.96998 * 119.99756 * 179.97438 * 8 7 5 31 31 H 1.07998 * 125.55218 * 0.02562 * 16 15 13 32 32 H 0.96700 * 116.99813 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4039 2.0218 -1.2598 5 6 3.8662 1.7711 -1.5240 6 1 4.4501 1.1928 -0.8233 7 6 4.4586 2.2801 -2.6603 8 7 3.7476 2.9847 -3.5132 9 14 6.2713 1.9699 -2.9873 10 1 6.5146 0.5080 -3.0802 11 1 6.6621 2.6192 -4.2644 12 1 7.0788 2.5366 -1.8773 13 6 2.1131 2.0625 1.1591 14 8 2.4579 3.2284 1.1524 15 6 1.7984 1.3936 2.4356 16 6 2.0015 1.9915 3.6499 17 16 1.5201 0.9119 4.8862 18 6 1.0704 -0.2921 3.6840 19 6 0.5179 -1.6255 3.9818 20 8 0.2400 -2.3843 3.0744 21 8 0.3210 -2.0031 5.2605 22 7 1.3055 0.1730 2.4937 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8110 1.6066 -2.0749 29 1 2.2258 3.0950 -1.1911 30 1 4.1645 3.3431 -4.3124 31 1 2.3999 2.9836 3.8026 32 1 -0.0438 -2.8868 5.4061 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721466809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:54 Heat of formation + Delta-G solvation = -57.720945 kcal Electronic energy + Delta-G solvation = -20081.620783 eV Core-core repulsion = 16749.392714 eV Total energy + Delta-G solvation = -3332.228069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.82753 -39.99320 -38.03688 -36.39850 -35.32348 -32.74012 -30.95123 -29.95837 -27.65776 -26.79545 -24.57135 -22.81255 -22.27817 -20.44782 -19.76502 -18.14966 -17.79363 -17.18496 -16.43195 -16.25617 -15.98159 -15.16388 -14.90547 -14.57304 -14.12529 -13.72578 -13.53453 -13.22253 -13.07630 -12.28143 -12.11065 -11.95496 -11.79518 -11.50414 -11.24605 -11.15390 -10.87120 -10.71847 -10.52744 -10.15369 -9.97134 -9.72205 -9.53593 -9.17801 -9.07398 -8.41250 -7.63062 -6.02490 -4.07452 -0.13501 0.85068 1.28463 1.57051 2.22381 2.54066 3.34127 3.37763 3.40719 3.79753 3.91260 4.37952 4.48102 4.77378 5.06456 5.07711 5.31475 5.53084 5.78117 5.98523 5.99407 6.11197 6.45790 6.55489 6.82513 7.04233 7.16871 7.44398 7.48213 7.56758 7.93603 8.23991 8.39122 8.84612 9.01989 9.57188 11.05568 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.024360 B = 0.004674 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.154024 B = 5989.089048 C = 6338.874500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.101 3.899 3 N -0.572 5.572 4 C 0.244 3.756 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.576 3.424 14 O -0.536 6.536 15 C 0.022 3.978 16 C -0.197 4.197 17 S 0.246 5.754 18 C -0.026 4.026 19 C 0.567 3.433 20 O -0.471 6.471 21 O -0.509 6.509 22 N -0.351 5.351 23 H 0.048 0.952 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.264 0.736 31 H 0.200 0.800 32 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.553 -8.441 19.209 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 N -0.301 5.301 4 C 0.126 3.874 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.358 3.642 14 O -0.413 6.413 15 C -0.118 4.118 16 C -0.339 4.339 17 S 0.501 5.499 18 C -0.299 4.299 19 C 0.405 3.595 20 O -0.355 6.355 21 O -0.322 6.322 22 N -0.071 5.071 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.217 0.783 32 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -7.436 -7.909 19.312 22.154 hybrid contribution 0.991 -0.309 -1.037 1.467 sum -6.445 -8.218 18.276 21.049 Atomic orbital electron populations 1.22001 0.96647 1.01268 1.00861 1.21845 0.93852 0.83073 1.03506 1.48185 1.60421 1.13691 1.07840 1.19393 0.95354 0.94550 0.78150 1.21388 0.94753 1.33970 1.06548 0.92460 1.24922 0.98336 0.94884 0.95847 1.69925 1.36281 1.35151 1.11945 0.86542 0.84937 0.78374 0.77475 1.20218 1.21145 1.20206 1.17013 0.79416 0.85841 0.81913 1.90783 1.48936 1.15602 1.86023 1.21134 1.04446 0.89673 0.96524 1.27501 1.03709 1.06927 0.95790 1.83841 1.51983 1.04888 1.09193 1.25849 1.12698 0.99116 0.92204 1.18862 0.75337 0.84490 0.80836 1.90987 1.45865 1.51977 1.46677 1.84479 1.78379 1.41292 1.28014 1.66997 1.08287 1.10511 1.21318 0.93256 0.92248 0.93391 0.90701 0.88574 0.94558 0.93612 0.92634 0.78303 0.71467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.65 37.15 0.36 -2.19 16 2 C 0.10 1.96 5.70 -4.05 -0.02 1.93 16 3 N -0.57 -13.10 2.47 -176.30 -0.44 -13.54 16 4 C 0.24 6.60 5.16 -5.19 -0.03 6.57 16 5 C -0.53 -15.28 9.39 -34.44 -0.32 -15.60 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 9 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.58 12.71 7.60 -12.48 -0.09 12.61 16 14 O -0.54 -13.47 16.26 5.28 0.09 -13.38 16 15 C 0.02 0.37 6.37 -84.61 -0.54 -0.17 16 16 C -0.20 -2.56 10.67 30.24 0.32 -2.24 16 17 S 0.25 2.31 23.02 -107.50 -2.47 -0.16 16 18 C -0.03 -0.33 7.43 -14.64 -0.11 -0.44 16 19 C 0.57 6.25 8.33 34.45 0.29 6.54 16 20 O -0.47 -6.63 17.85 -19.27 -0.34 -6.97 16 21 O -0.51 -3.32 13.29 -40.71 -0.54 -3.86 16 22 N -0.35 -5.53 5.11 -7.97 -0.04 -5.57 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.82 6.89 -51.92 -0.36 0.46 16 26 H 0.07 1.48 8.02 -51.93 -0.42 1.06 16 27 H 0.10 1.81 5.27 -51.93 -0.27 1.53 16 28 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 29 H 0.05 1.36 7.37 -51.93 -0.38 0.98 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.20 2.33 8.03 -52.49 -0.42 1.91 16 32 H 0.43 0.68 9.11 45.56 0.42 1.10 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -35.43 303.07 -5.96 -41.38 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -2.25 Total: -2.20 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -0.24 Total: 8.73 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.26 Total: -45.19 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.80 Total: -24.22 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.47 Total: -0.16 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.43 -5.96 -41.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721466809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.337 kcal (2) G-P(sol) polarization free energy of solvation -35.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds