Wall clock time and date at job start Tue Mar 31 2020 06:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47460 * 2 1 4 4 C 1.50697 * 109.47240 * 119.99621 * 2 1 3 5 5 H 1.08004 * 119.99698 * 119.99461 * 4 2 1 6 6 C 1.37871 * 120.00246 * 300.00330 * 4 2 1 7 7 N 1.31514 * 120.00614 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99933 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47585 * 89.99926 * 8 6 4 10 10 H 1.48500 * 109.47348 * 209.99922 * 8 6 4 11 11 H 1.48508 * 109.47079 * 330.00108 * 8 6 4 12 12 N 1.46497 * 109.47273 * 239.99728 * 2 1 3 13 13 C 1.46496 * 120.00162 * 300.00209 * 12 2 1 14 14 C 1.34785 * 120.00106 * 119.99910 * 12 2 1 15 15 O 1.21597 * 119.99773 * 3.26297 * 14 12 2 16 16 C 1.47511 * 120.00011 * 183.25761 * 14 12 2 17 17 C 1.36874 * 122.54946 * 184.10658 * 16 14 12 18 18 S 1.71040 * 108.89079 * 179.86663 * 17 16 14 19 19 C 1.75987 * 90.57361 * 0.32951 * 18 17 16 20 20 C 1.47364 * 125.22520 * 179.82823 * 19 18 17 21 21 O 1.21511 * 119.99930 * 179.97438 * 20 19 18 22 22 O 1.34781 * 120.00135 * 359.97376 * 20 19 18 23 23 N 1.29938 * 109.55062 * 359.80212 * 19 18 17 24 24 H 1.08997 * 109.47269 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47273 * 300.00322 * 1 2 3 26 26 H 1.09006 * 109.46957 * 60.00298 * 1 2 3 27 27 H 0.97000 * 120.00395 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47103 * 263.94964 * 13 12 2 29 29 H 1.09004 * 109.47567 * 143.95148 * 13 12 2 30 30 H 1.09005 * 109.47151 * 23.95190 * 13 12 2 31 31 H 1.08002 * 125.55351 * 0.02562 * 17 16 14 32 32 H 0.96703 * 117.00420 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8594 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8746 2.6992 10 1 0.9771 1.9955 3.9070 11 1 0.8491 2.1774 1.4921 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0834 15 8 3.1360 1.1098 -1.8620 16 6 3.2256 -0.7084 -3.3229 17 6 4.0783 -0.1232 -4.2195 18 16 4.3454 -1.2052 -5.5170 19 6 3.2757 -2.3885 -4.7737 20 6 2.9515 -3.7121 -5.3348 21 8 2.1987 -4.4568 -4.7389 22 8 3.4902 -4.0966 -6.5089 23 7 2.8159 -1.9162 -3.6539 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.9032 -0.5278 4.4376 28 1 2.4679 -2.7351 -1.0666 29 1 1.5186 -2.2596 -2.4953 30 1 0.7435 -2.3285 -0.8944 31 1 4.5136 0.8603 -4.1222 32 1 3.2483 -4.9736 -6.8367 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721467809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:54 Heat of formation + Delta-G solvation = -44.591325 kcal Electronic energy + Delta-G solvation = -20037.877110 eV Core-core repulsion = 16706.218385 eV Total energy + Delta-G solvation = -3331.658726 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.87692 -40.05368 -38.28165 -36.43881 -35.60289 -32.71188 -31.11335 -30.32907 -27.16028 -26.13106 -25.18863 -24.56191 -21.59128 -20.12377 -19.81296 -18.22432 -17.86825 -17.28683 -16.70243 -16.31887 -15.87843 -15.62233 -15.03599 -14.68137 -14.27679 -13.67120 -13.52921 -13.14057 -12.89094 -12.51165 -12.23269 -12.16906 -11.98685 -11.80945 -11.62739 -11.18443 -11.10988 -10.67838 -10.12331 -10.07608 -9.82103 -9.57037 -9.37260 -9.22212 -9.16887 -8.61157 -7.69244 -6.11573 -4.12306 -0.20634 0.77407 1.20543 1.47858 2.17181 2.46950 3.25625 3.38350 3.40700 3.65492 3.72359 4.32150 4.37308 4.71333 4.98286 5.00499 5.20673 5.45005 5.96557 6.07117 6.25186 6.34474 6.38133 6.51689 6.73221 6.86571 7.00988 7.15352 7.34225 7.44621 7.63331 8.15466 8.46614 8.74764 8.91433 9.48586 11.01242 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.028857 B = 0.004597 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.057357 B = 6088.946499 C = 6613.044737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.227 3.773 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.561 5.561 13 C 0.069 3.931 14 C 0.576 3.424 15 O -0.546 6.546 16 C 0.023 3.977 17 C -0.197 4.197 18 S 0.255 5.745 19 C -0.022 4.022 20 C 0.567 3.433 21 O -0.470 6.470 22 O -0.508 6.508 23 N -0.355 5.355 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.034 0.966 27 H 0.266 0.734 28 H 0.048 0.952 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.201 0.799 32 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.142 -3.641 -22.405 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.126 3.874 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.289 5.289 13 C -0.074 4.074 14 C 0.359 3.641 15 O -0.425 6.425 16 C -0.116 4.116 17 C -0.340 4.340 18 S 0.510 5.490 19 C -0.295 4.295 20 C 0.404 3.596 21 O -0.354 6.354 22 O -0.321 6.321 23 N -0.075 5.075 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.218 0.782 32 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 3.419 -3.247 -22.378 22.869 hybrid contribution -1.009 0.482 1.022 1.514 sum 2.411 -2.765 -21.356 21.669 Atomic orbital electron populations 1.22466 0.98790 1.01368 0.99308 1.19405 0.90183 0.95149 0.82679 0.91850 1.21139 1.32715 1.14229 0.88342 0.90267 1.24857 0.95673 0.96604 0.95562 1.69875 1.45243 1.40167 0.97945 0.86916 0.80482 0.83820 0.77470 1.20348 1.22114 1.18791 1.47792 1.46979 1.12568 1.21593 1.22328 1.00785 0.80830 1.03498 1.17061 0.79969 0.85480 0.81606 1.90765 1.57470 1.17359 1.76883 1.20968 1.00814 0.90136 0.99694 1.27500 1.01802 1.06935 0.97737 1.83870 1.40191 1.05358 1.19606 1.25921 1.06375 0.99299 0.97858 1.18848 0.77608 0.84256 0.78883 1.91001 1.32617 1.52310 1.59447 1.84471 1.69059 1.41948 1.36645 1.66894 1.19193 1.10402 1.10990 0.92277 0.92997 0.94733 0.92435 0.93345 0.87964 0.91324 0.78212 0.71354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 8.66 37.16 0.32 -3.28 16 2 C 0.23 5.70 2.22 -69.09 -0.15 5.55 16 3 H 0.06 1.72 5.96 -51.93 -0.31 1.41 16 4 C -0.53 -15.04 8.95 -34.44 -0.31 -15.35 16 5 H 0.08 2.46 7.89 -52.48 -0.41 2.05 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -27.44 13.96 55.43 0.77 -26.66 16 8 Si 0.88 22.10 24.37 -169.99 -4.14 17.96 16 9 H -0.28 -6.62 6.87 56.52 0.39 -6.24 16 10 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 11 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 12 N -0.56 -12.52 2.75 -176.50 -0.49 -13.01 16 13 C 0.07 1.36 8.89 59.84 0.53 1.89 16 14 C 0.58 12.13 7.66 -12.48 -0.10 12.03 16 15 O -0.55 -12.80 16.03 5.28 0.08 -12.72 16 16 C 0.02 0.38 6.54 -84.61 -0.55 -0.17 16 17 C -0.20 -2.40 10.66 30.24 0.32 -2.08 16 18 S 0.25 2.24 23.02 -107.50 -2.47 -0.24 16 19 C -0.02 -0.27 7.43 -14.64 -0.11 -0.38 16 20 C 0.57 6.14 8.33 34.44 0.29 6.42 16 21 O -0.47 -6.64 17.85 -19.27 -0.34 -6.99 16 22 O -0.51 -3.17 13.29 -40.71 -0.54 -3.71 16 23 N -0.35 -5.50 6.48 -7.97 -0.05 -5.55 16 24 H 0.06 1.25 6.67 -51.93 -0.35 0.90 16 25 H 0.05 1.19 3.27 -51.93 -0.17 1.02 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.10 1.85 4.90 -54.72 -0.27 1.58 16 30 H 0.07 1.34 6.44 -51.93 -0.33 1.00 16 31 H 0.20 2.12 8.03 -52.49 -0.42 1.70 16 32 H 0.43 0.59 9.11 45.56 0.42 1.00 16 LS Contribution 289.91 15.07 4.37 4.37 Total: -1.00 -35.75 289.91 -4.54 -40.29 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -1.87 Total: -0.48 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 0.15 Total: 6.74 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.24 Total: -45.23 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.80 Total: -23.42 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.14 Total: 17.96 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.47 Total: -0.24 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -35.75 -4.54 -40.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721467809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.304 kcal (2) G-P(sol) polarization free energy of solvation -35.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds