Wall clock time and date at job start Tue Mar 31 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47592 * 2 1 4 4 C 1.50703 * 109.47510 * 239.99794 * 2 1 3 5 5 H 1.08001 * 120.00222 * 240.00801 * 4 2 1 6 6 C 1.37879 * 119.99663 * 60.00264 * 4 2 1 7 7 N 1.31515 * 119.99970 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99858 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47025 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47145 * 120.00066 * 8 6 4 11 11 H 1.48501 * 109.46849 * 239.99764 * 8 6 4 12 12 N 1.46499 * 109.46804 * 120.00012 * 2 1 3 13 13 C 1.46501 * 120.00023 * 60.00142 * 12 2 1 14 14 C 1.34782 * 120.00011 * 239.99573 * 12 2 1 15 15 O 1.21598 * 119.99900 * 2.75351 * 14 12 2 16 16 C 1.47519 * 119.99978 * 182.74705 * 14 12 2 17 17 C 1.36872 * 122.54782 * 173.16384 * 16 14 12 18 18 S 1.71035 * 108.88844 * 179.97438 * 17 16 14 19 19 C 1.75982 * 90.57633 * 0.02562 * 18 17 16 20 20 C 1.47357 * 125.22956 * 179.97438 * 19 18 17 21 21 O 1.21513 * 120.00746 * 180.02562 * 20 19 18 22 22 O 1.34791 * 119.99832 * 0.02562 * 20 19 18 23 23 N 1.29935 * 109.54793 * 359.97438 * 19 18 17 24 24 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47501 * 300.00334 * 1 2 3 26 26 H 1.09008 * 109.46924 * 59.99950 * 1 2 3 27 27 H 0.96998 * 119.99570 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.46799 * 263.98818 * 13 12 2 29 29 H 1.08994 * 109.47321 * 23.99503 * 13 12 2 30 30 H 1.09002 * 109.47137 * 143.99000 * 13 12 2 31 31 H 1.08002 * 125.55500 * 359.97438 * 17 16 14 32 32 H 0.96695 * 117.00168 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.1466 -2.2870 -3.6037 10 1 1.1663 -1.5866 -4.8161 11 1 3.1468 -0.1873 -4.8164 12 7 2.0182 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 6 2.7931 -0.0356 2.0834 15 8 3.0457 1.1421 1.9169 16 6 3.3347 -0.7476 3.2565 17 6 4.2344 -0.1751 4.1145 18 16 4.6237 -1.3017 5.3411 19 6 3.5428 -2.4881 4.6192 20 6 3.3025 -3.8460 5.1385 21 8 2.5337 -4.5898 4.5621 22 8 3.9355 -4.2632 6.2530 23 7 2.9891 -1.9827 3.5579 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 0.7089 1.1612 -3.4844 28 1 0.7984 -2.1451 2.0881 29 1 1.4255 -2.5696 0.4772 30 1 2.5057 -2.6085 1.8912 31 1 4.6335 0.8249 4.0307 32 1 3.7456 -5.1617 6.5555 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721467813.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:56 Heat of formation + Delta-G solvation = -55.842580 kcal Electronic energy + Delta-G solvation = -19989.046692 eV Core-core repulsion = 16656.900075 eV Total energy + Delta-G solvation = -3332.146617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.80176 -39.97736 -38.12962 -36.39983 -35.39348 -32.79197 -30.98704 -29.46797 -27.03693 -26.00221 -25.21427 -24.44338 -21.47360 -20.05905 -19.74972 -18.16529 -17.81127 -17.16506 -16.46593 -16.27459 -15.71378 -15.35563 -14.98003 -14.59279 -14.13774 -13.65550 -13.48822 -13.05273 -12.45497 -12.32792 -12.14301 -11.95337 -11.67208 -11.51331 -11.13453 -11.04023 -10.81161 -10.68010 -10.22972 -10.15621 -10.02032 -9.73330 -9.20416 -9.12262 -9.11444 -8.41881 -7.56515 -6.05910 -4.13540 -0.14668 0.83919 1.27110 1.56014 2.22160 2.53484 3.28126 3.35735 3.39673 3.77319 3.88651 4.37317 4.45356 4.76890 5.05960 5.09739 5.25488 5.56117 5.99847 6.24319 6.37736 6.72252 6.81625 6.89772 7.06971 7.11737 7.43628 7.49430 7.53246 7.73291 8.02418 8.19607 8.49986 8.78943 8.97934 9.52516 10.99572 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.024465 B = 0.004564 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.204872 B = 6133.724557 C = 6621.255952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.256 3.744 3 H 0.065 0.935 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.567 5.567 13 C 0.081 3.919 14 C 0.572 3.428 15 O -0.546 6.546 16 C 0.023 3.977 17 C -0.197 4.197 18 S 0.248 5.752 19 C -0.025 4.025 20 C 0.567 3.433 21 O -0.471 6.471 22 O -0.509 6.509 23 N -0.354 5.354 24 H 0.031 0.969 25 H 0.012 0.988 26 H 0.095 0.905 27 H 0.263 0.737 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.200 0.800 32 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.891 -7.620 18.460 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.083 0.917 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.295 5.295 13 C -0.062 4.062 14 C 0.355 3.645 15 O -0.426 6.426 16 C -0.117 4.117 17 C -0.340 4.340 18 S 0.503 5.497 19 C -0.297 4.297 20 C 0.405 3.595 21 O -0.355 6.355 22 O -0.321 6.321 23 N -0.074 5.074 24 H 0.050 0.950 25 H 0.031 0.969 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.217 0.783 32 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 7.045 -7.089 18.497 21.025 hybrid contribution -0.224 -0.640 -1.461 1.611 sum 6.822 -7.730 17.036 19.912 Atomic orbital electron populations 1.22077 0.97831 0.99660 1.00845 1.19074 0.91208 0.94499 0.79631 0.91745 1.21355 1.31832 1.13028 0.90132 0.92059 1.24887 0.94921 0.94985 0.98951 1.69893 1.36365 1.22651 1.23666 0.86418 0.78615 0.79592 0.82654 1.19785 1.20887 1.20915 1.48198 1.46436 1.12493 1.22376 1.22046 1.00833 0.82013 1.01331 1.17098 0.80184 0.85981 0.81227 1.90766 1.61191 1.14879 1.75742 1.21087 1.00526 0.89488 1.00587 1.27503 1.01357 1.06968 0.98139 1.83831 1.38864 1.03144 1.23837 1.25845 1.05887 0.98713 0.99287 1.18863 0.77644 0.84694 0.78336 1.90995 1.33094 1.54048 1.57376 1.84476 1.66495 1.39440 1.41738 1.66980 1.20290 1.09632 1.10516 0.94953 0.96937 0.88702 0.92726 0.93813 0.90787 0.89738 0.78273 0.71440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 8.97 37.16 0.33 -3.29 16 2 C 0.26 6.76 2.63 -69.08 -0.18 6.58 16 3 H 0.06 1.93 6.90 -51.93 -0.36 1.57 16 4 C -0.52 -14.55 7.95 -34.44 -0.27 -14.82 16 5 H 0.06 1.69 7.44 -52.49 -0.39 1.30 16 6 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.34 11.32 55.43 0.63 -24.72 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.57 -13.11 2.75 -176.50 -0.49 -13.60 16 13 C 0.08 1.64 8.39 59.85 0.50 2.15 16 14 C 0.57 12.58 7.66 -12.47 -0.10 12.48 16 15 O -0.55 -13.43 16.04 5.28 0.08 -13.35 16 16 C 0.02 0.39 6.50 -84.61 -0.55 -0.16 16 17 C -0.20 -2.54 10.67 30.24 0.32 -2.22 16 18 S 0.25 2.33 23.02 -107.50 -2.47 -0.14 16 19 C -0.02 -0.32 7.43 -14.65 -0.11 -0.42 16 20 C 0.57 6.42 8.33 34.44 0.29 6.70 16 21 O -0.47 -6.87 17.85 -19.27 -0.34 -7.22 16 22 O -0.51 -3.39 13.29 -40.74 -0.54 -3.93 16 23 N -0.35 -5.73 6.59 -7.97 -0.05 -5.79 16 24 H 0.03 0.75 7.67 -51.93 -0.40 0.35 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 2.55 6.07 -51.92 -0.32 2.23 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.54 7.12 -51.93 -0.37 1.17 16 30 H 0.08 1.62 5.28 -51.93 -0.27 1.35 16 31 H 0.20 2.27 8.03 -52.49 -0.42 1.85 16 32 H 0.43 0.74 9.11 45.56 0.42 1.15 16 LS Contribution 297.75 15.07 4.49 4.49 Total: -1.00 -34.08 297.75 -5.67 -39.76 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -2.09 Total: -0.56 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 0.14 Total: 8.69 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.09 Total: -44.10 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.80 Total: -24.49 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.47 Total: -0.14 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.08 -5.67 -39.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721467813.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.087 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds