Wall clock time and date at job start Tue Mar 31 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47592 * 2 1 4 4 C 1.50703 * 109.47510 * 239.99794 * 2 1 3 5 5 H 1.08001 * 120.00222 * 240.00801 * 4 2 1 6 6 C 1.37879 * 119.99663 * 60.00264 * 4 2 1 7 7 N 1.31515 * 119.99970 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99858 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47025 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47145 * 120.00066 * 8 6 4 11 11 H 1.48501 * 109.46849 * 239.99764 * 8 6 4 12 12 N 1.46499 * 109.46804 * 120.00012 * 2 1 3 13 13 C 1.46501 * 120.00023 * 60.00142 * 12 2 1 14 14 C 1.34782 * 120.00011 * 239.99573 * 12 2 1 15 15 O 1.21598 * 119.99900 * 2.75351 * 14 12 2 16 16 C 1.47519 * 119.99978 * 182.74705 * 14 12 2 17 17 C 1.36872 * 122.54782 * 173.16384 * 16 14 12 18 18 S 1.71035 * 108.88844 * 179.97438 * 17 16 14 19 19 C 1.75982 * 90.57633 * 0.02562 * 18 17 16 20 20 C 1.47357 * 125.22956 * 179.97438 * 19 18 17 21 21 O 1.21513 * 120.00746 * 180.02562 * 20 19 18 22 22 O 1.34791 * 119.99832 * 0.02562 * 20 19 18 23 23 N 1.29935 * 109.54793 * 359.97438 * 19 18 17 24 24 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47501 * 300.00334 * 1 2 3 26 26 H 1.09008 * 109.46924 * 59.99950 * 1 2 3 27 27 H 0.96998 * 119.99570 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.46799 * 263.98818 * 13 12 2 29 29 H 1.08994 * 109.47321 * 23.99503 * 13 12 2 30 30 H 1.09002 * 109.47137 * 143.99000 * 13 12 2 31 31 H 1.08002 * 125.55500 * 359.97438 * 17 16 14 32 32 H 0.96695 * 117.00168 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.1466 -2.2870 -3.6037 10 1 1.1663 -1.5866 -4.8161 11 1 3.1468 -0.1873 -4.8164 12 7 2.0182 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 6 2.7931 -0.0356 2.0834 15 8 3.0457 1.1421 1.9169 16 6 3.3347 -0.7476 3.2565 17 6 4.2344 -0.1751 4.1145 18 16 4.6237 -1.3017 5.3411 19 6 3.5428 -2.4881 4.6192 20 6 3.3025 -3.8460 5.1385 21 8 2.5337 -4.5898 4.5621 22 8 3.9355 -4.2632 6.2530 23 7 2.9891 -1.9827 3.5579 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 0.7089 1.1612 -3.4844 28 1 0.7984 -2.1451 2.0881 29 1 1.4255 -2.5696 0.4772 30 1 2.5057 -2.6085 1.8912 31 1 4.6335 0.8249 4.0307 32 1 3.7456 -5.1617 6.5555 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721467813.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:55 Heat of formation + Delta-G solvation = -81.271950 kcal Electronic energy + Delta-G solvation = -19990.149392 eV Core-core repulsion = 16656.900075 eV Total energy + Delta-G solvation = -3333.249317 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.92006 -41.02730 -39.60107 -37.27678 -37.14670 -34.80529 -32.17562 -31.34383 -28.09279 -27.65285 -27.33979 -25.80184 -22.90339 -21.46752 -20.76471 -19.54331 -18.74385 -18.48753 -18.24838 -17.27002 -17.21317 -17.03664 -16.38423 -16.23602 -15.36320 -15.05327 -14.76105 -14.38174 -14.31769 -13.95096 -13.57607 -13.42722 -13.08135 -12.88024 -12.75159 -12.70775 -12.66461 -12.24729 -12.14224 -12.11680 -11.27654 -11.11958 -10.97213 -10.63139 -10.52427 -10.16346 -9.39386 -8.17187 -6.33664 -1.09953 -0.06266 0.27580 0.39005 1.40385 1.41036 1.42831 1.52613 1.54411 2.20542 2.32155 2.45520 3.10616 3.20317 3.82704 3.88380 4.19780 4.38663 4.58054 4.72783 4.75500 4.86925 5.02012 5.19810 5.39305 5.41888 5.52899 5.62942 5.94281 6.11725 6.14231 6.68816 6.71934 6.83045 7.16383 7.38801 8.87926 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.024465 B = 0.004564 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.204872 B = 6133.724557 C = 6621.255952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.260 3.740 3 H 0.019 0.981 4 C -0.541 4.541 5 H 0.057 0.943 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.968 3.032 9 H -0.269 1.269 10 H -0.273 1.273 11 H -0.280 1.280 12 N -0.581 5.581 13 C 0.093 3.907 14 C 0.565 3.435 15 O -0.587 6.587 16 C -0.010 4.010 17 C -0.201 4.201 18 S 0.400 5.600 19 C -0.052 4.052 20 C 0.578 3.422 21 O -0.511 6.511 22 O -0.487 6.487 23 N -0.389 5.389 24 H 0.041 0.959 25 H 0.019 0.981 26 H 0.074 0.926 27 H 0.266 0.734 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.212 0.788 32 H 0.449 0.551 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.639 -9.194 20.648 24.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.037 0.963 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.792 3.208 9 H -0.193 1.193 10 H -0.198 1.198 11 H -0.206 1.206 12 N -0.309 5.309 13 C -0.050 4.050 14 C 0.351 3.649 15 O -0.469 6.469 16 C -0.150 4.150 17 C -0.345 4.345 18 S 0.656 5.344 19 C -0.324 4.324 20 C 0.417 3.583 21 O -0.399 6.399 22 O -0.303 6.303 23 N -0.110 5.110 24 H 0.060 0.940 25 H 0.038 0.962 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.229 0.771 32 H 0.314 0.686 Dipole moment (debyes) X Y Z Total from point charges 8.809 -8.712 20.751 24.168 hybrid contribution -0.626 -0.134 -1.877 1.983 sum 8.183 -8.846 18.874 22.393 Atomic orbital electron populations 1.21873 0.97005 0.99969 1.00131 1.18701 0.91832 0.92501 0.81150 0.96286 1.21545 1.32197 1.13082 0.91113 0.92499 1.25721 0.94945 0.95628 1.01898 1.70017 1.37046 1.23755 1.24538 0.85366 0.78270 0.78426 0.78702 1.19312 1.19835 1.20598 1.48167 1.47277 1.13473 1.21947 1.22047 1.01745 0.80458 1.00747 1.17747 0.79142 0.85800 0.82192 1.90714 1.62402 1.16677 1.77141 1.20273 1.03518 0.90674 1.00533 1.27843 0.99626 1.08454 0.98531 1.83340 1.33996 0.98169 1.18925 1.26111 1.06777 1.00261 0.99296 1.18720 0.77002 0.83877 0.78714 1.90985 1.35014 1.55037 1.58858 1.84417 1.65058 1.41405 1.39390 1.66737 1.21988 1.09520 1.12758 0.93959 0.96151 0.90779 0.92438 0.93082 0.92034 0.88397 0.77143 0.68593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.79 8.97 71.98 0.65 -6.15 16 2 C 0.26 14.41 2.63 44.24 0.12 14.53 16 3 H 0.02 1.22 6.90 -2.39 -0.02 1.21 16 4 C -0.54 -30.97 7.95 25.60 0.20 -30.76 16 5 H 0.06 3.23 7.44 -2.91 -0.02 3.21 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.91 -53.67 11.32 21.45 0.24 -53.43 16 8 Si 0.97 44.34 29.54 68.60 2.03 46.36 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 N -0.58 -27.98 2.75 -830.58 -2.29 -30.27 16 13 C 0.09 3.84 8.39 127.77 1.07 4.92 16 14 C 0.57 25.82 7.66 86.69 0.66 26.48 16 15 O -0.59 -30.35 16.04 -4.02 -0.06 -30.41 16 16 C -0.01 -0.35 6.50 41.28 0.27 -0.09 16 17 C -0.20 -4.76 10.67 67.50 0.72 -4.04 16 18 S 0.40 5.74 23.02 -56.49 -1.30 4.44 16 19 C -0.05 -1.21 7.43 87.38 0.65 -0.56 16 20 C 0.58 11.57 8.33 70.22 0.59 12.16 16 21 O -0.51 -14.29 17.85 19.79 0.35 -13.93 16 22 O -0.49 -4.45 13.29 -57.02 -0.76 -5.21 16 23 N -0.39 -12.31 6.59 -179.14 -1.18 -13.49 16 24 H 0.04 2.04 7.67 -2.39 -0.02 2.02 16 25 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 4.14 6.07 -2.38 -0.01 4.12 16 27 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 2.64 7.12 -2.39 -0.02 2.62 16 30 H 0.10 3.83 5.28 -2.39 -0.01 3.82 16 31 H 0.21 4.38 8.03 -2.91 -0.02 4.36 16 32 H 0.45 -0.31 9.11 -74.06 -0.67 -0.98 16 Total: -1.00 -78.28 297.75 2.92 -75.37 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 0.51 Total: 2.62 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 5.37 Total: 17.95 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -3.22 Total: -97.18 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -0.47 Total: -49.56 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 5.74 SS G_CDS: -1.30 Total: 4.44 kcal Total: -78.28 2.92 -75.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721467813.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.907 kcal (2) G-P(sol) polarization free energy of solvation -78.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds