Wall clock time and date at job start Tue Mar 31 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 120.00185 * 2 1 4 4 H 1.48501 * 109.46968 * 269.99666 * 3 2 1 5 5 H 1.48503 * 109.46923 * 29.99644 * 3 2 1 6 6 H 1.48502 * 109.46978 * 149.99637 * 3 2 1 7 7 C 1.37878 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99851 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00143 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47047 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47329 * 179.97438 * 10 9 7 12 12 C 1.34228 * 117.00583 * 179.97438 * 11 10 9 13 13 O 1.20836 * 119.99625 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00633 * 179.97438 * 12 11 10 15 15 H 1.08999 * 109.47082 * 305.00485 * 14 12 11 16 16 O 1.42895 * 109.47402 * 184.99783 * 14 12 11 17 17 C 1.50707 * 109.46572 * 64.99942 * 14 12 11 18 18 C 1.38237 * 120.00392 * 95.23700 * 17 14 12 19 19 C 1.38219 * 120.01452 * 180.25422 * 18 17 14 20 20 C 1.38267 * 120.02305 * 359.74114 * 19 18 17 21 21 C 1.38195 * 120.01443 * 0.02562 * 20 19 18 22 22 C 1.38325 * 120.00626 * 274.99773 * 17 14 12 23 23 Cl 1.73599 * 120.01741 * 0.03066 * 22 17 14 24 24 H 0.97003 * 119.99491 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47419 * 60.00086 * 9 7 2 26 26 H 1.09001 * 109.46880 * 299.99704 * 9 7 2 27 27 H 1.09006 * 109.47348 * 59.99551 * 10 9 7 28 28 H 1.09002 * 109.47184 * 299.99886 * 10 9 7 29 29 H 0.96696 * 114.00341 * 300.00464 * 16 14 12 30 30 H 1.08000 * 119.99782 * 359.97136 * 18 17 14 31 31 H 1.08001 * 119.99260 * 179.72556 * 19 18 17 32 32 H 1.08003 * 119.99358 * 180.02562 * 20 19 18 33 33 H 1.08001 * 120.00765 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0010 11 8 5.4735 -2.6366 0.0009 12 6 6.0829 -3.8326 0.0014 13 8 5.4248 -4.8460 0.0013 14 6 7.5878 -3.9115 0.0008 15 1 7.9812 -3.3423 -0.8415 16 8 7.9932 -5.2768 -0.1160 17 6 8.1214 -3.3374 1.2880 18 6 8.4118 -4.1735 2.3499 19 6 8.8962 -3.6466 3.5323 20 6 9.0956 -2.2836 3.6520 21 6 8.8102 -1.4473 2.5895 22 6 8.3253 -1.9743 1.4054 23 17 7.9659 -0.9243 0.0705 24 1 -0.4849 0.8401 -0.0004 25 1 3.8746 -0.6801 0.8911 26 1 3.8752 -0.6805 -0.8889 27 1 3.6584 -3.1502 -0.8892 28 1 3.6578 -3.1505 0.8907 29 1 7.6780 -5.8434 0.6014 30 1 8.2558 -5.2381 2.2572 31 1 9.1187 -4.2997 4.3632 32 1 9.4745 -1.8725 4.5760 33 1 8.9656 -0.3827 2.6832 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748465962.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:07 Heat of formation + Delta-G solvation = -121.512161 kcal Electronic energy + Delta-G solvation = -19876.517783 eV Core-core repulsion = 16507.187062 eV Total energy + Delta-G solvation = -3369.330721 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72268 -39.39443 -37.26668 -36.52260 -35.90397 -33.34996 -32.07953 -31.05473 -30.72980 -27.71607 -25.08641 -22.97870 -22.56111 -21.03437 -20.59657 -18.34719 -17.96175 -17.05059 -16.63235 -16.42884 -15.76598 -15.71851 -14.88437 -14.27523 -14.17993 -14.14721 -13.70880 -13.46976 -13.26163 -12.62414 -12.39087 -12.14755 -11.70484 -11.63699 -11.53371 -11.45755 -11.21828 -10.88488 -10.71903 -10.54602 -9.99597 -9.93958 -9.72794 -9.36549 -9.21126 -8.91104 -8.63258 -6.13983 -4.15076 0.77907 0.92023 1.99583 2.29759 2.86912 3.26949 3.31920 3.34342 3.39166 3.95899 4.14661 4.37742 4.43250 4.61551 4.84844 4.92381 5.01947 5.19831 5.20876 5.27904 5.50421 5.88442 5.91916 5.93662 5.94881 6.06940 6.42810 6.43304 6.69690 7.07020 7.16082 7.21392 7.61149 7.97964 8.38584 8.87643 9.45776 10.98613 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.005157 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.631003 B = 5428.198444 C = 6118.378252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.007 4.007 10 C 0.081 3.919 11 O -0.345 6.345 12 C 0.433 3.567 13 O -0.504 6.504 14 C 0.160 3.840 15 H 0.147 0.853 16 O -0.523 6.523 17 C -0.116 4.116 18 C -0.094 4.094 19 C -0.115 4.115 20 C -0.100 4.100 21 C -0.109 4.109 22 C -0.011 4.011 23 Cl -0.044 7.044 24 H 0.266 0.734 25 H 0.028 0.972 26 H 0.023 0.977 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.384 0.616 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.036 -5.110 6.058 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.044 4.044 10 C 0.009 3.991 11 O -0.260 6.260 12 C 0.275 3.725 13 O -0.393 6.393 14 C 0.098 3.902 15 H 0.165 0.835 16 O -0.330 6.330 17 C -0.118 4.118 18 C -0.112 4.112 19 C -0.133 4.133 20 C -0.119 4.119 21 C -0.128 4.128 22 C -0.038 4.038 23 Cl -0.015 7.015 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.234 0.766 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 21.868 -4.954 5.398 23.063 hybrid contribution -0.222 0.724 0.384 0.849 sum 21.646 -4.230 5.782 22.801 Atomic orbital electron populations 1.69894 1.06278 1.27193 1.50132 1.24918 0.94735 0.99117 0.94109 0.86790 0.80531 0.83367 0.78807 1.20034 1.21147 1.18639 1.20842 0.88285 0.95015 1.52386 0.90681 1.19596 0.96900 0.90010 0.97898 1.23432 0.72198 1.01756 1.01735 1.86563 1.26255 1.31184 1.82021 1.24140 0.92007 0.82979 0.73377 1.90668 1.66578 1.36685 1.45372 1.20291 0.87536 0.84911 0.97419 0.83541 1.86681 1.75844 1.17341 1.53093 1.19962 1.02599 0.92660 0.96557 1.20866 0.98397 0.99781 0.92190 1.21192 0.99124 0.95540 0.97466 1.21210 0.98791 0.93436 0.98432 1.21119 0.99253 1.01010 0.91409 1.20776 1.01237 0.90491 0.91304 1.98425 1.92880 1.65265 1.44900 0.92433 0.95375 0.95820 0.91641 0.91760 0.76625 0.84949 0.84992 0.84811 0.84411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.53 -15.03 9.66 -34.44 -0.33 -15.36 16 8 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 9 C -0.01 -0.16 4.42 -27.88 -0.12 -0.28 16 10 C 0.08 1.75 5.40 37.16 0.20 1.95 16 11 O -0.34 -6.48 8.96 -39.25 -0.35 -6.83 16 12 C 0.43 7.34 7.26 36.00 0.26 7.60 16 13 O -0.50 -9.68 16.07 -25.47 -0.41 -10.09 16 14 C 0.16 2.09 3.25 -29.03 -0.09 1.99 16 15 H 0.15 1.81 7.13 -51.93 -0.37 1.44 16 16 O -0.52 -6.27 12.64 -55.14 -0.70 -6.97 16 17 C -0.12 -1.39 5.04 -104.59 -0.53 -1.92 16 18 C -0.09 -0.91 9.30 -39.59 -0.37 -1.28 16 19 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 20 C -0.10 -0.84 10.05 -39.59 -0.40 -1.24 16 21 C -0.11 -1.11 9.83 -39.54 -0.39 -1.50 16 22 C -0.01 -0.14 6.31 -39.50 -0.25 -0.38 16 23 Cl -0.04 -0.59 26.16 -51.86 -1.36 -1.94 16 24 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 26 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 27 H 0.07 1.42 8.13 -51.93 -0.42 1.00 16 28 H 0.06 1.39 8.13 -51.93 -0.42 0.97 16 29 H 0.38 3.54 7.07 45.56 0.32 3.87 16 30 H 0.13 0.98 6.40 -52.49 -0.34 0.64 16 31 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 304.18 15.07 4.58 4.58 Total: -1.00 -32.90 304.18 -7.49 -40.39 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -2.85 Total: 0.42 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.51 Total: -9.75 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.77 Total: -26.65 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -1.46 Total: -23.89 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.36 Total: -1.94 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.90 -7.49 -40.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748465962.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.124 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds