Wall clock time and date at job start Tue Mar 31 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 120.00185 * 2 1 4 4 H 1.48501 * 109.46968 * 269.99666 * 3 2 1 5 5 H 1.48503 * 109.46923 * 29.99644 * 3 2 1 6 6 H 1.48502 * 109.46978 * 149.99637 * 3 2 1 7 7 C 1.37878 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99851 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00143 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47047 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47329 * 179.97438 * 10 9 7 12 12 C 1.34228 * 117.00583 * 179.97438 * 11 10 9 13 13 O 1.20836 * 119.99625 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00633 * 179.97438 * 12 11 10 15 15 H 1.08999 * 109.47082 * 305.00485 * 14 12 11 16 16 O 1.42895 * 109.47402 * 184.99783 * 14 12 11 17 17 C 1.50707 * 109.46572 * 64.99942 * 14 12 11 18 18 C 1.38237 * 120.00392 * 95.23700 * 17 14 12 19 19 C 1.38219 * 120.01452 * 180.25422 * 18 17 14 20 20 C 1.38267 * 120.02305 * 359.74114 * 19 18 17 21 21 C 1.38195 * 120.01443 * 0.02562 * 20 19 18 22 22 C 1.38325 * 120.00626 * 274.99773 * 17 14 12 23 23 Cl 1.73599 * 120.01741 * 0.03066 * 22 17 14 24 24 H 0.97003 * 119.99491 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47419 * 60.00086 * 9 7 2 26 26 H 1.09001 * 109.46880 * 299.99704 * 9 7 2 27 27 H 1.09006 * 109.47348 * 59.99551 * 10 9 7 28 28 H 1.09002 * 109.47184 * 299.99886 * 10 9 7 29 29 H 0.96696 * 114.00341 * 300.00464 * 16 14 12 30 30 H 1.08000 * 119.99782 * 359.97136 * 18 17 14 31 31 H 1.08001 * 119.99260 * 179.72556 * 19 18 17 32 32 H 1.08003 * 119.99358 * 180.02562 * 20 19 18 33 33 H 1.08001 * 120.00765 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0010 11 8 5.4735 -2.6366 0.0009 12 6 6.0829 -3.8326 0.0014 13 8 5.4248 -4.8460 0.0013 14 6 7.5878 -3.9115 0.0008 15 1 7.9812 -3.3423 -0.8415 16 8 7.9932 -5.2768 -0.1160 17 6 8.1214 -3.3374 1.2880 18 6 8.4118 -4.1735 2.3499 19 6 8.8962 -3.6466 3.5323 20 6 9.0956 -2.2836 3.6520 21 6 8.8102 -1.4473 2.5895 22 6 8.3253 -1.9743 1.4054 23 17 7.9659 -0.9243 0.0705 24 1 -0.4849 0.8401 -0.0004 25 1 3.8746 -0.6801 0.8911 26 1 3.8752 -0.6805 -0.8889 27 1 3.6584 -3.1502 -0.8892 28 1 3.6578 -3.1505 0.8907 29 1 7.6780 -5.8434 0.6014 30 1 8.2558 -5.2381 2.2572 31 1 9.1187 -4.2997 4.3632 32 1 9.4745 -1.8725 4.5760 33 1 8.9656 -0.3827 2.6832 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748465962.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:07 Heat of formation + Delta-G solvation = -142.268331 kcal Electronic energy + Delta-G solvation = -19877.417838 eV Core-core repulsion = 16507.187062 eV Total energy + Delta-G solvation = -3370.230776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.95192 -40.37436 -38.43170 -37.42884 -37.22757 -35.43060 -33.16068 -32.53272 -31.75612 -28.83991 -26.93206 -23.71468 -23.61756 -22.67273 -22.03868 -19.54421 -19.19982 -18.70466 -18.05807 -17.64511 -16.82666 -16.81096 -16.34207 -15.72211 -15.36372 -15.03719 -14.92826 -14.73136 -14.55055 -14.35772 -13.59832 -13.30964 -13.17930 -12.94352 -12.61256 -12.52842 -12.45826 -12.41148 -12.27052 -11.84155 -11.78764 -11.56785 -11.47991 -11.29554 -10.83315 -9.99208 -9.71320 -8.36485 -6.44343 -0.00160 0.20165 0.93540 1.15657 1.35612 1.36738 1.49624 1.53986 2.31959 2.55619 2.98536 3.04461 3.22420 3.55192 3.68924 3.92051 4.12346 4.14283 4.15441 4.35330 4.42850 4.56747 4.59110 4.83178 4.98046 5.16085 5.26100 5.26464 5.39752 5.42122 5.49425 5.78200 6.13463 6.22633 6.55917 6.61550 7.20774 8.79638 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.005157 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.631003 B = 5428.198444 C = 6118.378252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.016 3.984 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.244 1.244 7 C -0.542 4.542 8 H 0.036 0.964 9 C 0.002 3.998 10 C 0.092 3.908 11 O -0.342 6.342 12 C 0.432 3.568 13 O -0.530 6.530 14 C 0.174 3.826 15 H 0.152 0.848 16 O -0.524 6.524 17 C -0.137 4.137 18 C -0.100 4.100 19 C -0.112 4.112 20 C -0.095 4.095 21 C -0.120 4.120 22 C -0.030 4.030 23 Cl -0.065 7.065 24 H 0.271 0.729 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.396 0.604 30 H 0.152 0.848 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.661 -4.569 7.499 26.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.183 4.183 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.168 1.168 7 C -0.580 4.580 8 H 0.054 0.946 9 C -0.036 4.036 10 C 0.019 3.981 11 O -0.258 6.258 12 C 0.275 3.725 13 O -0.420 6.420 14 C 0.112 3.888 15 H 0.169 0.831 16 O -0.332 6.332 17 C -0.138 4.138 18 C -0.118 4.118 19 C -0.130 4.130 20 C -0.112 4.112 21 C -0.138 4.138 22 C -0.057 4.057 23 Cl -0.036 7.036 24 H 0.080 0.920 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.248 0.752 30 H 0.170 0.830 31 H 0.182 0.818 32 H 0.183 0.817 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 24.517 -4.439 6.845 25.839 hybrid contribution -1.018 0.408 0.014 1.097 sum 23.498 -4.031 6.860 24.809 Atomic orbital electron populations 1.70035 1.08251 1.28596 1.51371 1.25887 0.95601 1.03346 0.93424 0.85693 0.79671 0.78048 0.79563 1.18895 1.20383 1.16772 1.21106 0.90664 0.93793 1.52391 0.94580 1.19402 0.94097 0.91814 0.98268 1.22979 0.74190 0.99900 1.01031 1.86561 1.24269 1.32532 1.82418 1.25092 0.93597 0.81820 0.71947 1.90653 1.67580 1.37239 1.46559 1.20220 0.84152 0.85633 0.98755 0.83085 1.86669 1.75433 1.17119 1.54004 1.19941 1.04333 0.92965 0.96607 1.21222 0.97891 1.00685 0.92040 1.21625 0.97576 0.96068 0.97684 1.21644 0.97276 0.93430 0.98886 1.21394 0.99167 1.02082 0.91195 1.20978 1.02748 0.90415 0.91538 1.98409 1.93189 1.65907 1.46122 0.92026 0.94816 0.95042 0.92492 0.92470 0.75223 0.83008 0.81826 0.81709 0.83285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 2 C 0.02 0.91 5.47 84.66 0.46 1.38 16 3 Si 0.95 43.76 27.47 68.60 1.88 45.64 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.24 -10.52 6.54 99.48 0.65 -9.87 16 7 C -0.54 -31.56 9.66 25.60 0.25 -31.31 16 8 H 0.04 2.31 7.99 -2.91 -0.02 2.28 16 9 C 0.00 0.08 4.42 29.85 0.13 0.21 16 10 C 0.09 4.01 5.40 71.98 0.39 4.40 16 11 O -0.34 -12.75 8.96 -51.40 -0.46 -13.21 16 12 C 0.43 14.44 7.26 71.23 0.52 14.96 16 13 O -0.53 -20.31 16.07 28.35 0.46 -19.85 16 14 C 0.17 4.36 3.25 29.10 0.09 4.45 16 15 H 0.15 3.63 7.13 -2.39 -0.02 3.61 16 16 O -0.52 -11.77 12.64 -129.95 -1.64 -13.41 16 17 C -0.14 -3.04 5.04 -19.84 -0.10 -3.14 16 18 C -0.10 -1.67 9.30 22.26 0.21 -1.47 16 19 C -0.11 -1.43 10.05 22.27 0.22 -1.20 16 20 C -0.09 -1.24 10.05 22.27 0.22 -1.02 16 21 C -0.12 -2.15 9.83 22.29 0.22 -1.93 16 22 C -0.03 -0.69 6.31 22.32 0.14 -0.54 16 23 Cl -0.07 -1.68 26.16 -2.72 -0.07 -1.76 16 24 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 25 H 0.03 1.59 7.20 -2.39 -0.02 1.57 16 26 H 0.03 1.47 7.57 -2.39 -0.02 1.45 16 27 H 0.06 2.54 8.13 -2.38 -0.02 2.52 16 28 H 0.06 2.53 8.13 -2.39 -0.02 2.51 16 29 H 0.40 6.60 7.07 -74.06 -0.52 6.08 16 30 H 0.15 1.79 6.40 -2.91 -0.02 1.78 16 31 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -71.77 304.18 3.79 -67.98 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.57 Total: 8.30 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 2.76 Total: -15.21 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.30 Total: -58.48 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -1.65 Total: -46.47 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.64 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.07 Total: -1.76 kcal Total: -71.77 3.79 -67.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748465962.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.287 kcal (2) G-P(sol) polarization free energy of solvation -71.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds